mRNA_P-wetherbeei_contig5493.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5493.5.1
Unique NamemRNA_P-wetherbeei_contig5493.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5493.5.1 vs. uniprot
Match: A0A1F3YN20_9PROT (Glycerophosphodiester phosphodiesterase n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YN20_9PROT)

HSP 1 Score: 156 bits (394), Expect = 1.440e-45
Identity = 73/111 (65.77%), Postives = 85/111 (76.58%), Query Frame = 1 
Query:    7 DLWRGAALPPVLSSFSVEALAAAKEVAPALPRGMLVSRIPGDWKARMERLGCVALHCNYKELTGPLAAEIHAAGYAVLCWTVNDPKEAAKLLGWGVDCVVTDRLDLIGPDF 339
            +LWRGAALPPVLSSFS  AL AA+  AP LPRG LV ++P DW+  M RLGCVALHCNYK LT  LAAEIH AG+A+L WTVN+P+ A ++   G DC+VTD LD IGP F
Sbjct:  127 ELWRGAALPPVLSSFSTGALEAARGAAPELPRGYLVDKVPEDWRDTMHRLGCVALHCNYKSLTEKLAAEIHGAGFAILLWTVNEPEIARQMFALGADCLVTDALDRIGPGF 237
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BLAST of mRNA_P-wetherbeei_contig5493.5.1 vs. uniprot
Match: A0A522VKT0_9PROT (Glycerophosphodiester phosphodiesterase n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522VKT0_9PROT)

HSP 1 Score: 155 bits (393), Expect = 2.930e-45
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 1 
Query:   10 LWRGAALPPVLSSFSVEALAAAKEVAPALPRGMLVSRIPGDWKARMERLGCVALHCNYKELTGPLAAEIHAAGYAVLCWTVNDPKEAAKLLGWGVDCVVTDRLDLIGPDF 339
            LWRGAA PPVLSSFS  ALAAA++ AP LPRG+LV RIP  W A ++ L C+ALHCNY+ L   LAA+IHAAGYA+L WTVND + A KLLGWGV+C+VTD LD +G +F
Sbjct:  141 LWRGAAQPPVLSSFSPLALAAARQAAPELPRGLLVGRIPPHWHALLQDLECIALHCNYRALNRRLAAQIHAAGYAILAWTVNDRRSARKLLGWGVNCLVTDALDRVGAEF 250
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BLAST of mRNA_P-wetherbeei_contig5493.5.1 vs. uniprot
Match: A0A1F4F480_9PROT (Glycerophosphodiester phosphodiesterase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F480_9PROT)

HSP 1 Score: 152 bits (384), Expect = 5.830e-44
Identity = 71/111 (63.96%), Postives = 83/111 (74.77%), Query Frame = 1 
Query:    7 DLWRGAALPPVLSSFSVEALAAAKEVAPALPRGMLVSRIPGDWKARMERLGCVALHCNYKELTGPLAAEIHAAGYAVLCWTVNDPKEAAKLLGWGVDCVVTDRLDLIGPDF 339
            +LW+GAAL PVLSSFSV AL AA+  AP LPRG LV  IP DWK  +E L CV+LHCN  +    +  E+ AAGYAV+CWTVN+P EA  LLGWGVDC+ TD LD+IGPDF
Sbjct:  134 ELWKGAALAPVLSSFSVAALEAARAAAPELPRGFLVDEIPADWKRPLESLECVSLHCNGGKAEENVIREVRAAGYAVVCWTVNEPAEARMLLGWGVDCLATDALDVIGPDF 244
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BLAST of mRNA_P-wetherbeei_contig5493.5.1 vs. uniprot
Match: A0A537BPD3_9PROT (Glycerophosphodiester phosphodiesterase (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BPD3_9PROT)

HSP 1 Score: 147 bits (371), Expect = 4.600e-43
Identity = 71/111 (63.96%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:    7 DLWRGAALPPVLSSFSVEALAAAKEVAPALPRGMLVSRIPGDWKARMERLGCVALHCNYKELTGPLAAEIHAAGYAVLCWTVNDPKEAAKLLGWGVDCVVTDRLDLIGPDF 339
            +LWRGA L PVLSSFS  AL AA+  AP LPRG+LV  +P DW  R+  L CVALHCN + L    A  I  AGY +LCWTVNDP  A +LLGWGVDCVVTD L LIGPDF
Sbjct:   50 ELWRGAPLQPVLSSFSSVALEAARAAAPDLPRGLLVDEVPADWLGRLRALDCVALHCNQQHLGERGARAIKEAGYGLLCWTVNDPVAARRLLGWGVDCVVTDALGLIGPDF 160
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BLAST of mRNA_P-wetherbeei_contig5493.5.1 vs. uniprot
Match: A0A1F4EWJ8_9PROT (Glycerophosphodiester phosphodiesterase n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4EWJ8_9PROT)

HSP 1 Score: 146 bits (369), Expect = 1.290e-41
Identity = 70/110 (63.64%), Postives = 83/110 (75.45%), Query Frame = 1 
Query:   10 LWRGAALPPVLSSFSVEALAAAKEVAPALPRGMLVSRIPGDWKARMERLGCVALHCNYKELTGPLAAEIHAAGYAVLCWTVNDPKEAAKLLGWGVDCVVTDRLDLIGPDF 339
            LW+GA L PVLSSFS  ALAAA+  AP LPRG+LV RIP  W+  M+ L CVALHCNY+ L   LAA+IHAAGYAVL WTVN+ + A KL GWGV+C+VTD L+ +G  F
Sbjct:  143 LWQGAPLQPVLSSFSSVALAAARHAAPELPRGLLVGRIPPHWRELMQDLDCVALHCNYRALNKRLAAQIHAAGYAVLAWTVNERRSARKLFGWGVNCLVTDALERVGAAF 252
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BLAST of mRNA_P-wetherbeei_contig5493.5.1 vs. uniprot
Match: A0A1F4B3Q2_9PROT (Glycerophosphodiester phosphodiesterase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4B3Q2_9PROT)

HSP 1 Score: 145 bits (366), Expect = 3.650e-41
Identity = 70/109 (64.22%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:   13 WRGAALPPVLSSFSVEALAAAKEVAPALPRGMLVSRIPGDWKARMERLGCVALHCNYKELTGPLAAEIHAAGYAVLCWTVNDPKEAAKLLGWGVDCVVTDRLDLIGPDF 339
            W GA  PPVLSSFS  ALAAA+ VAP LPRG+LV RIP  W   M  L CVALHCN++ L   LAA IH AGY +L WTVN+ + A KLLGWGVDC+VTD L  IGP F
Sbjct:  144 WAGAPQPPVLSSFSTVALAAARSVAPELPRGLLVGRIPPHWHELMRDLDCVALHCNHRALNARLAARIHDAGYGILTWTVNERRTARKLLGWGVDCLVTDALGTIGPSF 252
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BLAST of mRNA_P-wetherbeei_contig5493.5.1 vs. uniprot
Match: A0A095HVJ6_BURGA (Glycerophosphodiester phosphodiesterase n=45 Tax=Burkholderia TaxID=32008 RepID=A0A095HVJ6_BURGA)

HSP 1 Score: 139 bits (350), Expect = 9.130e-39
Identity = 64/109 (58.72%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:   13 WRGAALPPVLSSFSVEALAAAKEVAPALPRGMLVSRIPGDWKARMERLGCVALHCNYKELTGPLAAEIHAAGYAVLCWTVNDPKEAAKLLGWGVDCVVTDRLDLIGPDF 339
            WRGAA+PP+LSSFSV+AL AA+   P LPRG+LV  +P DW+A    LGCVALH N++E      AEI AAG  +L +TVN+P  A +L+ WGVD + TDR+DLIGPDF
Sbjct:  143 WRGAAVPPLLSSFSVDALDAARRAVPDLPRGLLVETLPDDWRALTAELGCVALHANHREFDAARVAEIRAAGLRMLAYTVNEPARARELMDWGVDLICTDRIDLIGPDF 251
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BLAST of mRNA_P-wetherbeei_contig5493.5.1 vs. uniprot
Match: A0A0S8BA61_9PROT (GP-PDE domain-containing protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8BA61_9PROT)

HSP 1 Score: 139 bits (350), Expect = 1.310e-38
Identity = 66/110 (60.00%), Postives = 79/110 (71.82%), Query Frame = 1 
Query:   10 LWRGAALPPVLSSFSVEALAAAKEVAPALPRGMLVSRIPGDWKARMERLGCVALHCNYKELTGPLAAEIHAAGYAVLCWTVNDPKEAAKLLGWGVDCVVTDRLDLIGPDF 339
            LW+GA   PVLSSFS  AL AA+E AP LPRG+L+ R+P  W      L CVALHC+++ LT  L   +H AG+AVL WTVNDP+ A KLLGWGVDC+VTD L  IGP+F
Sbjct:  137 LWQGAPRMPVLSSFSPLALGAAREAAPELPRGLLLQRVPPHWCEMARDLECVALHCSHRALTQALVRAMHEAGFAVLAWTVNDPRAARKLLGWGVDCIVTDALKRIGPEF 246
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BLAST of mRNA_P-wetherbeei_contig5493.5.1 vs. uniprot
Match: A0A2H5DS65_CHRS5 (Glycerophosphodiester phosphodiesterase n=1 Tax=Chromobacterium sp. (strain ATCC 53434 / SC 14030) TaxID=2059672 RepID=A0A2H5DS65_CHRS5)

HSP 1 Score: 138 bits (348), Expect = 1.690e-38
Identity = 65/106 (61.32%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:   10 LWRGAALPPVLSSFSVEALAAAKEVAPALPRGMLVSRIPGDWKARMERLGCVALHCNYKELTGPLAAEIHAAGYAVLCWTVNDPKEAAKLLGWGVDCVVTDRLDLI 327
            LW GAA+PP+LSSF ++AL AAK   PALPR  L   IP DW+A +E L CVALHC++K LT PLA  I AAGY +LC+TVND  +A +LL WGVD + TDRLDL+
Sbjct:  141 LWAGAAVPPLLSSFEIDALRAAKAAEPALPRAFLCEEIPADWRAILEELDCVALHCDHKTLTEPLARAIKAAGYQLLCYTVNDAADARRLLDWGVDSLCTDRLDLL 246
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BLAST of mRNA_P-wetherbeei_contig5493.5.1 vs. uniprot
Match: A0A0B6RHS1_BURPL (Glycerophosphoryl diesterphosphodiesterase UgpQ n=10 Tax=Burkholderia TaxID=32008 RepID=A0A0B6RHS1_BURPL)

HSP 1 Score: 138 bits (348), Expect = 2.190e-38
Identity = 65/112 (58.04%), Postives = 81/112 (72.32%), Query Frame = 1 
Query:   10 LWRGAALPPVLSSFSVEALAAAKEVAPALPRGMLVSRIPGDWKARMERLGCVALHCNYKELTGPLAAEIHAAGYAVLCWTVNDPKEAAKLLGWGVDCVVTDRLDLIGPDFGA 345
            LW GAA+PP+LSSFSV ALAAA+E APALPRG+LV  +P DW+A    LGCV+LH +++ L     A I AAG  VL +TVN+P  A +L+ WGVD + TDR+DLIGP F  
Sbjct:  145 LWHGAAVPPLLSSFSVAALAAAREAAPALPRGLLVETLPADWRALTAELGCVSLHASHRALDAASVAAIRAAGLHVLAYTVNEPARARELIDWGVDLICTDRIDLIGPHFAG 256
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5493.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3YN20_9PROT1.440e-4565.77Glycerophosphodiester phosphodiesterase n=1 Tax=Be... [more]
A0A522VKT0_9PROT2.930e-4566.36Glycerophosphodiester phosphodiesterase n=2 Tax=Be... [more]
A0A1F4F480_9PROT5.830e-4463.96Glycerophosphodiester phosphodiesterase n=1 Tax=Be... [more]
A0A537BPD3_9PROT4.600e-4363.96Glycerophosphodiester phosphodiesterase (Fragment)... [more]
A0A1F4EWJ8_9PROT1.290e-4163.64Glycerophosphodiester phosphodiesterase n=2 Tax=un... [more]
A0A1F4B3Q2_9PROT3.650e-4164.22Glycerophosphodiester phosphodiesterase n=1 Tax=Be... [more]
A0A095HVJ6_BURGA9.130e-3958.72Glycerophosphodiester phosphodiesterase n=45 Tax=B... [more]
A0A0S8BA61_9PROT1.310e-3860.00GP-PDE domain-containing protein n=1 Tax=Betaprote... [more]
A0A2H5DS65_CHRS51.690e-3861.32Glycerophosphodiester phosphodiesterase n=1 Tax=Ch... [more]
A0A0B6RHS1_BURPL2.190e-3858.04Glycerophosphoryl diesterphosphodiesterase UgpQ n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5493contigP-wetherbeei_contig5493:3482..3829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog999541.bgla_1g03550
Preferred nameugpQ
PFAMsGDPD
Model size348
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00017,RC00425
KEGG koko:K01126
KEGG ReactionR01030,R01470
KEGG Pathwayko00564,map00564
Hectar predicted targeting categorysignal peptide
Exons1
Evalue8.46e-39
EggNOG OGsCOG0584@1|root,COG0584@2|Bacteria,1MU8H@1224|Proteobacteria,2VKF6@28216|Betaproteobacteria,1K1M5@119060|Burkholderiaceae
EC3.1.4.46
Descriptionglycerophosphoryl diester phosphodiesterase
Cds size348
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.282535-CDS-P-wetherbeei_contig5493:3481..38291683186819.282535-CDS-P-wetherbeei_contig5493:3481..3829Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5493 3482..3829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5493.5.1prot_P-wetherbeei_contig5493.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5493 3482..3829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5493.5.1

>prot_P-wetherbeei_contig5493.5.1 ID=prot_P-wetherbeei_contig5493.5.1|Name=mRNA_P-wetherbeei_contig5493.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
MLDLWRGAALPPVLSSFSVEALAAAKEVAPALPRGMLVSRIPGDWKARME
RLGCVALHCNYKELTGPLAAEIHAAGYAVLCWTVNDPKEAAKLLGWGVDC
VVTDRLDLIGPDFGA*
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mRNA from alignment at P-wetherbeei_contig5493:3482..3829-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5493.5.1 ID=mRNA_P-wetherbeei_contig5493.5.1|Name=mRNA_P-wetherbeei_contig5493.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig5493:3482..3829- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGACCTATGGCGTGGCGCCGCCCTGCCGCCGGTGCTCTCGTCCTT
TTCCGTCGAGGCGCTCGCTGCCGCGAAAGAGGTGGCTCCTGCGCTTCCCC
GCGGCATGCTCGTGAGCCGGATCCCGGGCGACTGGAAGGCGCGCATGGAG
CGGCTGGGCTGCGTCGCCCTGCATTGCAACTACAAGGAGCTGACGGGGCC
GCTGGCAGCCGAGATCCATGCGGCCGGCTACGCCGTGCTGTGCTGGACGG
TCAACGACCCGAAGGAAGCGGCGAAGCTCCTCGGATGGGGTGTGGACTGC
GTGGTGACCGATCGGCTGGACCTGATCGGGCCGGATTTCGGCGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5493:3482..3829-

>mRNA_P-wetherbeei_contig5493.5.1 ID=mRNA_P-wetherbeei_contig5493.5.1|Name=mRNA_P-wetherbeei_contig5493.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig5493:3482..3829- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGACCTATGGCGTGGCGCCGCCCTGCCGCCGGTGCTCTCGTCCTT
TTCCGTCGAGGCGCTCGCTGCCGCGAAAGAGGTGGCTCCTGCGCTTCCCC
GCGGCATGCTCGTGAGCCGGATCCCGGGCGACTGGAAGGCGCGCATGGAG
CGGCTGGGCTGCGTCGCCCTGCATTGCAACTACAAGGAGCTGACGGGGCC
GCTGGCAGCCGAGATCCATGCGGCCGGCTACGCCGTGCTGTGCTGGACGG
TCAACGACCCGAAGGAAGCGGCGAAGCTCCTCGGATGGGGTGTGGACTGC
GTGGTGACCGATCGGCTGGACCTGATCGGGCCGGATTTCGGCGCCTGA
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