mRNA_P-wetherbeei_contig5493.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5493.3.1
Unique NamemRNA_P-wetherbeei_contig5493.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5493.3.1 vs. uniprot
Match: A0A840G922_RHOTE (SnoaL-like domain-containing protein n=1 Tax=Rhodocyclus tenuis TaxID=1066 RepID=A0A840G922_RHOTE)

HSP 1 Score: 172 bits (437), Expect = 6.880e-53
Identity = 78/139 (56.12%), Postives = 103/139 (74.10%), Query Frame = 1
Query:    4 NLERMAAYFESLTPETAQHIGAFYAADAWFKDPFNEVRGTEAISRIFTHMFEQVSEPRFRVVDRVRTDDGAFLTWEFTFRFRP--EAPLQMVRGASHLRFDASGKVAYHRDYWDAAGELYEKLPLLGPVLRMLRRRLSA 414
            +LER+ A++E  +P + +  G FY+ADA+FKDPFNEVRG  A+ RIF HMF+Q+  PRF +VDR+    GA L WEFTFR R    A  Q++RG SHL+FD  GKV +HRDYWDAA ELY KLPL+G ++R L+++L+A
Sbjct:    7 SLERLVAFYEDFSPASVERFGEFYSADAYFKDPFNEVRGLAALQRIFLHMFQQLDAPRFGIVDRIVDAGGAVLVWEFTFRMRSWKAAETQLIRGVSHLKFDGEGKVCWHRDYWDAAEELYAKLPLIGSLVRGLQKKLAA 145          
BLAST of mRNA_P-wetherbeei_contig5493.3.1 vs. uniprot
Match: A0A1A8Y2S1_9RHOO (SnoaL-like domain-containing protein n=1 Tax=Candidatus Propionivibrio aalborgensis TaxID=1860101 RepID=A0A1A8Y2S1_9RHOO)

HSP 1 Score: 172 bits (436), Expect = 8.330e-53
Identity = 80/140 (57.14%), Postives = 101/140 (72.14%), Query Frame = 1
Query:    1 MNLERMAAYFESLTPETAQHIGAFYAADAWFKDPFNEVRGTEAISRIFTHMFEQVSEPRFRVVDRVRTDDGAFLTWEFTFRFR--PEAPLQMVRGASHLRFDASGKVAYHRDYWDAAGELYEKLPLLGPVLRMLRRRLSA 414
            MNL+ +  +++  TPE+    G FY+ADA+FKDPFNEVRG +AI RIF HMF QV+EPRF V ++V  D+GA L WEF FR +   +    ++ GASHL+FDA GKV YHRDYWD A ELY KLP++G VLR  R+ LSA
Sbjct:    1 MNLDPLIRFYDEFTPESVARFGEFYSADAYFKDPFNEVRGIDAIQRIFGHMFSQVTEPRFVVTEKVVDDNGALLVWEFCFRMKLWGKGESHVMHGASHLKFDAEGKVCYHRDYWDTAEELYMKLPIMGSVLRCFRKALSA 140          
BLAST of mRNA_P-wetherbeei_contig5493.3.1 vs. uniprot
Match: A0A5C8NT30_9BURK (Nuclear transport factor 2 family protein n=1 Tax=Zeimonas arvi TaxID=2498847 RepID=A0A5C8NT30_9BURK)

HSP 1 Score: 171 bits (433), Expect = 3.380e-52
Identity = 84/138 (60.87%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    4 NLERMAAYFESLTPETAQHIGAFYAADAWFKDPFNEVRGTEAISRIFTHMFEQVSEPRFRVVDRVRTDDGAFLTWEFTFRFR--PEAPLQMVRGASHLRFDASGKVAYHRDYWDAAGELYEKLPLLGPVLRMLRRRLS 411
            +L R+ A+FES+ PE AQ +   YA DAWFKDPFNEVRG +AI RIF  MFEQ+ +P F V D V   D AFLTWE  FRFR       Q +RGA+HLRF A G++A HRDYWDAA ELYEKLP LG ++R LRRR S
Sbjct:   13 SLRRVVAFFESIRPEDAQRMDTLYADDAWFKDPFNEVRGPQAIGRIFAAMFEQLHDPAFVVRDAVAQGDQAFLTWELRFRFRRFDSRTPQTIRGATHLRFAADGRIAMHRDYWDAAEELYEKLPALGALMRWLRRRAS 150          
BLAST of mRNA_P-wetherbeei_contig5493.3.1 vs. uniprot
Match: A0A011NI04_9PROT (SnoaL-like domain protein n=1 Tax=Candidatus Accumulibacter sp. SK-12 TaxID=1454001 RepID=A0A011NI04_9PROT)

HSP 1 Score: 170 bits (431), Expect = 6.390e-52
Identity = 83/142 (58.45%), Postives = 101/142 (71.13%), Query Frame = 1
Query:    1 MNLERMAAYFESLTPETAQHIGAFYAADAWFKDPFNEVRGTEAISRIFTHMFEQVSEPRFRVVDRVRTDDGAFLTWEFTFRFRP--EAPLQMVRGASHLRFDASGKVAYHRDYWDAAGELYEKLPLLGPVLRMLRRRLSAAG 420
            M L+ +  +F+ L+PE+      FY+ADA FKDPFNEVRG  AI RIF HMFEQV EPRF V ++V  + GA L W FTFR         Q++RG SHL+FDA+GKVAYHRDYWDAA ELY KLP+LG ++R LRR L+A G
Sbjct:    1 MKLDELIKFFQGLSPESIARFPEFYSADACFKDPFNEVRGVAAIQRIFAHMFEQVGEPRFVVSEKVADEGGAMLIWTFTFRAARWGGGRTQLIRGVSHLKFDAAGKVAYHRDYWDAAEELYMKLPVLGVLMRGLRRGLAAPG 142          
BLAST of mRNA_P-wetherbeei_contig5493.3.1 vs. uniprot
Match: UPI001290FDEE (nuclear transport factor 2 family protein n=1 Tax=Propionivibrio limicola TaxID=167645 RepID=UPI001290FDEE)

HSP 1 Score: 169 bits (427), Expect = 2.360e-51
Identity = 81/144 (56.25%), Postives = 102/144 (70.83%), Query Frame = 1
Query:    1 MNLERMAAYFESLTPETAQHIGAFYAADAWFKDPFNEVRGTEAISRIFTHMFEQVSEPRFRVVDRVRTDDGAFLTWEFTFRFRP------EAPLQMVRGASHLRFDASGKVAYHRDYWDAAGELYEKLPLLGPVLRMLRRRLSA 414
            M+L+R+ A+F  LTPE+      FY+ADA+FKDPFNEVRG EAI RIF HMF QV  PRF V++ +   + A L WEF FR R           Q+VRG SHL+FDA+G+V YHRDYWDAA ELY KLP++G ++R LR+RL+A
Sbjct:    1 MDLDRLIAFFHDLTPESVGRFPEFYSADAYFKDPFNEVRGVEAIQRIFAHMFRQVDAPRFVVIEHLADANNAMLVWEFRFRPRGWGRGTGRGEAQVVRGVSHLKFDAAGRVNYHRDYWDAAEELYMKLPVIGCLMRWLRKRLTA 144          
BLAST of mRNA_P-wetherbeei_contig5493.3.1 vs. uniprot
Match: UPI00048021D3 (nuclear transport factor 2 family protein n=1 Tax=Dechloromonas agitata TaxID=73030 RepID=UPI00048021D3)

HSP 1 Score: 168 bits (426), Expect = 2.770e-51
Identity = 82/140 (58.57%), Postives = 98/140 (70.00%), Query Frame = 1
Query:    1 MNLERMAAYFESLTPETAQHIGAFYAADAWFKDPFNEVRGTEAISRIFTHMFEQVSEPRFRVVDRVRTDDGAFLTWEFTFRFR--PEAPLQMVRGASHLRFDASGKVAYHRDYWDAAGELYEKLPLLGPVLRMLRRRLSA 414
            MNL+R+  ++ S  P++      FY+ DAWFKDPFNEVRG  AI RIF+HMF+QV EPRF VVD+V    GA L WEF FR R   +   Q++RG SHLRFDA GKV YHRDYWD   ELY KLP LG ++R LRR L+A
Sbjct:    1 MNLDRLIDFYNSFAPDSVARFPEFYSPDAWFKDPFNEVRGIPAIQRIFSHMFKQVDEPRFVVVDQVVDAGGAMLVWEFCFRVRLWGKGQTQVMRGVSHLRFDADGKVCYHRDYWDTGEELYMKLPGLGLLMRGLRRVLAA 140          
BLAST of mRNA_P-wetherbeei_contig5493.3.1 vs. uniprot
Match: UPI0012913BF3 (nuclear transport factor 2 family protein n=1 Tax=Zoogloea sp. 1C4 TaxID=2570190 RepID=UPI0012913BF3)

HSP 1 Score: 168 bits (425), Expect = 3.690e-51
Identity = 79/138 (57.25%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    1 MNLERMAAYFESLTPETAQHIGAFYAADAWFKDPFNEVRGTEAISRIFTHMFEQVSEPRFRVVDRVRTDDGAFLTWEFTFRFRPEAPLQMVRGASHLRFDASGKVAYHRDYWDAAGELYEKLPLLGPVLRMLRRRLSA 414
            M+L  + AY+ESLT E+   + AFYA DA F DPFN+VRG  AI RIF HMF QV  PRF V+++V   DGA L W F FRFR   P Q+++G SHL+FD  G+V +HRDYWDAA ELY KLP +  +LR+LRR+L+A
Sbjct:    1 MSLNALIAYYESLTEESVVRLPAFYAEDATFTDPFNDVRGVPAIQRIFRHMFRQVETPRFVVLEKVADADGAVLVWAFHFRFRRSGPEQVIQGVSHLKFDDDGRVNFHRDYWDAASELYMKLPGISLLLRLLRRKLAA 138          
BLAST of mRNA_P-wetherbeei_contig5493.3.1 vs. uniprot
Match: A0A7L6A4T3_9RHOO (Nuclear transport factor 2 family protein n=1 Tax=Dechloromonas sp. TaxID=1917218 RepID=A0A7L6A4T3_9RHOO)

HSP 1 Score: 167 bits (424), Expect = 6.960e-51
Identity = 82/140 (58.57%), Postives = 99/140 (70.71%), Query Frame = 1
Query:    1 MNLERMAAYFESLTPETAQHIGAFYAADAWFKDPFNEVRGTEAISRIFTHMFEQVSEPRFRVVDRVRTDDGAFLTWEFTFRFRP--EAPLQMVRGASHLRFDASGKVAYHRDYWDAAGELYEKLPLLGPVLRMLRRRLSA 414
            MNL+ +  +F  LTPE+      FY+ADA+FKDPFNEVRG  AI RIF HMFEQV EPRF V +RV  D GA L W  +FR         Q++RG SHL+FDA+GKV YHRDYWDAA ELY KLP++G ++R LRR L+A
Sbjct:    1 MNLDALIEFFHGLTPESVTRFPEFYSADAYFKDPFNEVRGVAAIQRIFAHMFEQVGEPRFVVSERVAADGGAMLIWNLSFRAARWGGGGKQVIRGVSHLKFDAAGKVDYHRDYWDAAEELYLKLPVVGMLMRGLRRLLAA 140          
BLAST of mRNA_P-wetherbeei_contig5493.3.1 vs. uniprot
Match: UPI0003F87869 (nuclear transport factor 2 family protein n=1 Tax=Azonexus hydrophilus TaxID=418702 RepID=UPI0003F87869)

HSP 1 Score: 166 bits (420), Expect = 2.260e-50
Identity = 80/140 (57.14%), Postives = 97/140 (69.29%), Query Frame = 1
Query:    1 MNLERMAAYFESLTPETAQHIGAFYAADAWFKDPFNEVRGTEAISRIFTHMFEQVSEPRFRVVDRVRTDDGAFLTWEFTFRFR--PEAPLQMVRGASHLRFDASGKVAYHRDYWDAAGELYEKLPLLGPVLRMLRRRLSA 414
            M L+ +  ++ +LTPET      FYA DAWFKDPFNEVRG  AI RIF HMF QV EPRF V + V    GA L WEF+FR R   +   Q++RG SHL+FDA+GKV++HRDYWD   ELY KLPL+G + R LRR L+A
Sbjct:    1 MKLDALIDFYHTLTPETVGRFAEFYADDAWFKDPFNEVRGLPAIERIFRHMFTQVGEPRFVVTETVSDAGGAMLVWEFSFRVRLWGKGETQLMRGVSHLKFDAAGKVSHHRDYWDTGEELYMKLPLMGGLWRGLRRMLAA 140          
BLAST of mRNA_P-wetherbeei_contig5493.3.1 vs. uniprot
Match: A0A2D0IFS0_9BURK (Isomerase n=1 Tax=Curvibacter sp. PD_MW3 TaxID=2027918 RepID=A0A2D0IFS0_9BURK)

HSP 1 Score: 165 bits (417), Expect = 6.890e-50
Identity = 73/138 (52.90%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    7 LERMAAYFESLTPETAQHIGAFYAADAWFKDPFNEVRGTEAISRIFTHMFEQVSEPRFRVVDRVRTDDGAFLTWEFTFRFRPEAP--LQMVRGASHLRFDASGKVAYHRDYWDAAGELYEKLPLLGPVLRMLRRRLSA 414
            +ER+  +FE+LTP + +  G FY  DAWFKDPFNEVRG   + RIF HM+E + EPRF +  RV   +  FLTW+F FRFR  +P   Q +RGA+HL+    G++ +HRDYWDAA ELYEKLPL+G ++R L+RR ++
Sbjct:    5 IERIVVFFEALTPHSVERFGEFYTEDAWFKDPFNEVRGLGEVKRIFGHMYENLHEPRFVITSRVVDGEQCFLTWDFHFRFRKFSPDVRQTIRGATHLKLAPDGRICFHRDYWDAAEELYEKLPLVGGLMRWLKRRANS 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5493.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A840G922_RHOTE6.880e-5356.12SnoaL-like domain-containing protein n=1 Tax=Rhodo... [more]
A0A1A8Y2S1_9RHOO8.330e-5357.14SnoaL-like domain-containing protein n=1 Tax=Candi... [more]
A0A5C8NT30_9BURK3.380e-5260.87Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A011NI04_9PROT6.390e-5258.45SnoaL-like domain protein n=1 Tax=Candidatus Accum... [more]
UPI001290FDEE2.360e-5156.25nuclear transport factor 2 family protein n=1 Tax=... [more]
UPI00048021D32.770e-5158.57nuclear transport factor 2 family protein n=1 Tax=... [more]
UPI0012913BF33.690e-5157.25nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A7L6A4T3_9RHOO6.960e-5158.57Nuclear transport factor 2 family protein n=1 Tax=... [more]
UPI0003F878692.260e-5057.14nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A2D0IFS0_9BURK6.890e-5052.90Isomerase n=1 Tax=Curvibacter sp. PD_MW3 TaxID=202... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5493contigP-wetherbeei_contig5493:2670..3092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1304883.KI912532_gene350
PFAMsSnoaL_2
Model size423
Max annot lvl206389|Rhodocyclales
KEGG rclassRC00146,RC00762
KEGG koko:K01822
KEGG ReactionR01837,R02216,R02499,R02840,R03327,R04163,R04678,R04849,R09955
KEGG Pathwayko00140,ko00984,ko01100,ko01120,map00140,map00984,map01100,map01120
KEGG ModuleM00107,M00110
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.54e-52
EggNOG OGsCOG3631@1|root,COG3631@2|Bacteria,1MZS5@1224|Proteobacteria,2VSD2@28216|Betaproteobacteria,2KWYK@206389|Rhodocyclales
EC5.3.3.1
DescriptionSnoaL-like domain
Cds size423
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.2172973-CDS-P-wetherbeei_contig5493:2669..30921683186819.2172973-CDS-P-wetherbeei_contig5493:2669..3092Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5493 2670..3092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5493.3.1prot_P-wetherbeei_contig5493.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5493 2670..3092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5493.3.1

>prot_P-wetherbeei_contig5493.3.1 ID=prot_P-wetherbeei_contig5493.3.1|Name=mRNA_P-wetherbeei_contig5493.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
MNLERMAAYFESLTPETAQHIGAFYAADAWFKDPFNEVRGTEAISRIFTH
MFEQVSEPRFRVVDRVRTDDGAFLTWEFTFRFRPEAPLQMVRGASHLRFD
ASGKVAYHRDYWDAAGELYEKLPLLGPVLRMLRRRLSAAG*
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mRNA from alignment at P-wetherbeei_contig5493:2670..3092+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5493.3.1 ID=mRNA_P-wetherbeei_contig5493.3.1|Name=mRNA_P-wetherbeei_contig5493.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig5493:2670..3092+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCTCGAGCGCATGGCCGCCTACTTCGAATCGCTGACGCCGGAGAC CGCGCAGCACATCGGCGCCTTCTACGCCGCGGACGCCTGGTTCAAGGACC CTTTCAACGAAGTGCGCGGCACGGAAGCGATCAGCCGGATATTCACGCAC ATGTTCGAGCAGGTGAGCGAACCGAGGTTCAGGGTAGTCGACCGCGTGCG CACGGACGACGGCGCCTTCCTGACCTGGGAATTCACGTTCCGCTTCAGGC CTGAAGCGCCGCTCCAGATGGTGCGCGGCGCAAGCCACCTGCGTTTCGAT GCCTCGGGCAAGGTCGCCTACCACCGCGACTACTGGGATGCGGCAGGGGA ACTCTACGAAAAGCTGCCCTTACTCGGGCCGGTCCTGCGGATGCTGCGGC GGCGCCTCTCGGCCGCCGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5493:2670..3092+

>mRNA_P-wetherbeei_contig5493.3.1 ID=mRNA_P-wetherbeei_contig5493.3.1|Name=mRNA_P-wetherbeei_contig5493.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig5493:2670..3092+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCTCGAGCGCATGGCCGCCTACTTCGAATCGCTGACGCCGGAGAC
CGCGCAGCACATCGGCGCCTTCTACGCCGCGGACGCCTGGTTCAAGGACC
CTTTCAACGAAGTGCGCGGCACGGAAGCGATCAGCCGGATATTCACGCAC
ATGTTCGAGCAGGTGAGCGAACCGAGGTTCAGGGTAGTCGACCGCGTGCG
CACGGACGACGGCGCCTTCCTGACCTGGGAATTCACGTTCCGCTTCAGGC
CTGAAGCGCCGCTCCAGATGGTGCGCGGCGCAAGCCACCTGCGTTTCGAT
GCCTCGGGCAAGGTCGCCTACCACCGCGACTACTGGGATGCGGCAGGGGA
ACTCTACGAAAAGCTGCCCTTACTCGGGCCGGTCCTGCGGATGCTGCGGC
GGCGCCTCTCGGCCGCCGGCTGA
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