mRNA_P-wetherbeei_contig54924.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54924.1.1
Unique NamemRNA_P-wetherbeei_contig54924.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54924.1.1 vs. uniprot
Match: UPI0019BAB90D (PQQ-dependent dehydrogenase, methanol/ethanol family n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019BAB90D)

HSP 1 Score: 338 bits (866), Expect = 6.310e-112
Identity = 157/162 (96.91%), Postives = 161/162 (99.38%), Query Frame = 1
Query:    1 PIVNPDKVPTYDYEAKDICPASEGGKWWNPMSYSPAKQMVFIPSREICTDIKSAKGERAEGKPHWGIGSIKWNKGHGQLVAFDAKSGNKKWTVEAPSPFMSGVLTTGGGLVFAGTPEGEFKAYDQDNGKELWSYQTGSGIVGSPVSYFIDGKQYVAVPSGFG 486
            PIVNPDKVP+Y+YEAKDICPASEGGKWWNPMSYSPAKQMVFIPSREICTDIKSAKGERAEGKPHWGIGSIKWNKGHGQLVAFDAKSGNKKWTV+APSPFMSGVLTTGGGLVFAGTPEGEFKAYDQD GKELWSYQTGSGIVGSPV+YFIDGKQYVAVPSGFG
Sbjct:  373 PIVNPDKVPSYEYEAKDICPASEGGKWWNPMSYSPAKQMVFIPSREICTDIKSAKGERAEGKPHWGIGSIKWNKGHGQLVAFDAKSGNKKWTVDAPSPFMSGVLTTGGGLVFAGTPEGEFKAYDQDTGKELWSYQTGSGIVGSPVTYFIDGKQYVAVPSGFG 534          
BLAST of mRNA_P-wetherbeei_contig54924.1.1 vs. uniprot
Match: A0A2E6QN62_9PROT (Quinonprotein alcohol dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QN62_9PROT)

HSP 1 Score: 261 bits (666), Expect = 7.110e-82
Identity = 124/169 (73.37%), Postives = 142/169 (84.02%), Query Frame = 1
Query:    1 PIVNPDKVPTYDYEAKDICPASEGGKWWNPMSYSPAKQMVFIPSREICTDIKSA---KG----ERAEGKPHWGIGSIKWNKGHGQLVAFDAKSGNKKWTVEAPSPFMSGVLTTGGGLVFAGTPEGEFKAYDQDNGKELWSYQTGSGIVGSPVSYFIDGKQYVAVPSGFG 486
            PIVNP+KVP Y+YEA DICPASEGGKWWNPMS +P  + VF+PSREICTDIKSA   KG    ER  GKP+WGIG+IKWNKG+GQLVAFDA +G KKWTV+APSPF SG+LTT GGLVFAGTPEG FKAY Q  G+E++SY  G+GI GSP++Y IDGKQYVAVP+GFG
Sbjct:  369 PIVNPEKVPGYNYEATDICPASEGGKWWNPMSVNPVAKTVFVPSREICTDIKSAPLGKGLNPPERTVGKPYWGIGTIKWNKGYGQLVAFDAATGEKKWTVKAPSPFTSGILTTSGGLVFAGTPEGYFKAYSQATGEEVFSYNVGTGIFGSPMTYAIDGKQYVAVPAGFG 537          
BLAST of mRNA_P-wetherbeei_contig54924.1.1 vs. uniprot
Match: A0A6N8UWZ4_9PROT (PQQ-dependent dehydrogenase, methanol/ethanol family n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6N8UWZ4_9PROT)

HSP 1 Score: 258 bits (658), Expect = 2.450e-80
Identity = 121/169 (71.60%), Postives = 143/169 (84.62%), Query Frame = 1
Query:    1 PIVNPDKVPTYDYEAKDICPASEGGKWWNPMSYSPAKQMVFIPSREICTDIKSAK-GE------RAEGKPHWGIGSIKWNKGHGQLVAFDAKSGNKKWTVEAPSPFMSGVLTTGGGLVFAGTPEGEFKAYDQDNGKELWSYQTGSGIVGSPVSYFIDGKQYVAVPSGFG 486
            PIVNP+KVP+YDYEAKDICPASEGGKWWNPMS +P  +M+F+PSREIC DIKSA  GE      R  GKP+WGIG+I WN G+GQLVAFDA++G K WTV+APSP+ SG+LTTGGGL+FAGTPEG FKAY Q+ G+EL+SY  G+GI GSP++Y IDGKQYVAVP+GFG
Sbjct:  403 PIVNPEKVPSYDYEAKDICPASEGGKWWNPMSVNPHTKMIFVPSREICVDIKSAPLGEGLNPPVRTVGKPYWGIGTIGWNPGYGQLVAFDARTGEKTWTVKAPSPYTSGLLTTGGGLLFAGTPEGYFKAYRQETGEELFSYNIGTGIFGSPMTYAIDGKQYVAVPAGFG 571          
BLAST of mRNA_P-wetherbeei_contig54924.1.1 vs. uniprot
Match: A0A836U5N4_9PROT (PQQ-dependent dehydrogenase, methanol/ethanol family n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A836U5N4_9PROT)

HSP 1 Score: 244 bits (623), Expect = 2.440e-75
Identity = 115/169 (68.05%), Postives = 136/169 (80.47%), Query Frame = 1
Query:    1 PIVNPDKVPTYDYEAKDICPASEGGKWWNPMSYSPAKQMVFIPSREICTDIKSAK-------GERAEGKPHWGIGSIKWNKGHGQLVAFDAKSGNKKWTVEAPSPFMSGVLTTGGGLVFAGTPEGEFKAYDQDNGKELWSYQTGSGIVGSPVSYFIDGKQYVAVPSGFG 486
            PI N DKVPTY+YEAK+ICPASEGGKWWNPM+ +P    VFIPSREIC DIKSA         E  EGKP+WGIG+I WN G+GQLVAFD ++G KKW V+  SPF SG+L+T GGL+FAGTPEGEF+AY Q+ G+ELWS+QTGSGI GSP +Y I+GKQ++AVPSGFG
Sbjct:  384 PIWNMDKVPTYEYEAKNICPASEGGKWWNPMTVNPETGWVFIPSREICVDIKSAPLGEGLNPDEITEGKPYWGIGTIGWNTGYGQLVAFDGRTGEKKWVVKDRSPFTSGLLSTRGGLLFAGTPEGEFRAYHQETGEELWSFQTGSGIFGSPSTYTINGKQFIAVPSGFG 552          
BLAST of mRNA_P-wetherbeei_contig54924.1.1 vs. uniprot
Match: A0A2E9E502_9PROT (Quinonprotein alcohol dehydrogenase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9E502_9PROT)

HSP 1 Score: 241 bits (615), Expect = 2.580e-74
Identity = 113/169 (66.86%), Postives = 134/169 (79.29%), Query Frame = 1
Query:    1 PIVNPDKVPTYDYEAKDICPASEGGKWWNPMSYSPAKQMVFIPSREICTDIKSAK-------GERAEGKPHWGIGSIKWNKGHGQLVAFDAKSGNKKWTVEAPSPFMSGVLTTGGGLVFAGTPEGEFKAYDQDNGKELWSYQTGSGIVGSPVSYFIDGKQYVAVPSGFG 486
            PI N +KVP YDYEAKDICPASEGGKWWNPM+ +P    VF+PSREIC DIKSA         E   G P+WGIG+I WN G+GQLVAFD K+G KKW V+  SPF SG+L+T GGL+FAGTPEGEF+AY+Q+ G+ELWS+QTGSGI GSP +Y IDG+Q++AVPSGFG
Sbjct:  367 PIWNEEKVPRYDYEAKDICPASEGGKWWNPMTVNPETGWVFVPSREICVDIKSAPLGEGLNPDEVTVGAPYWGIGTIGWNTGYGQLVAFDGKTGEKKWVVKDRSPFTSGLLSTRGGLLFAGTPEGEFRAYNQETGEELWSFQTGSGIFGSPSTYTIDGEQFIAVPSGFG 535          
BLAST of mRNA_P-wetherbeei_contig54924.1.1 vs. uniprot
Match: A0A0S8D7Z6_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_40 TaxID=1703389 RepID=A0A0S8D7Z6_9PROT)

HSP 1 Score: 218 bits (555), Expect = 1.530e-65
Identity = 105/169 (62.13%), Postives = 124/169 (73.37%), Query Frame = 1
Query:    1 PIVNPDKVPTYDYEAKDICPASEGGKWWNPMSYSPAKQMVFIPSREICTDIKSAK-------GERAEGKPHWGIGSIKWNKGHGQLVAFDAKSGNKKWTVEAPSPFMSGVLTTGGGLVFAGTPEGEFKAYDQDNGKELWSYQTGSGIVGSPVSYFIDGKQYVAVPSGFG 486
            PI N +KVPTY+YEAKDICPASEGGKWWNPM+ +P    VF+PSREIC DIKSA         ER  GKP+WGIG+I WN G+GQLVAFD ++G K WTV+  SPF SG+L+T GGLVFAGTPEG              S+QTGSGI GSP +Y ++G+Q+VAVPSGFG
Sbjct:  353 PIWNMEKVPTYEYEAKDICPASEGGKWWNPMTVNPESGWVFVPSREICVDIKSAPLGEGLNPDERTPGKPYWGIGTISWNTGYGQLVAFDGRTGKKMWTVKDRSPFTSGLLSTRGGLVFAGTPEGXXXXXXXXXXXXXXSFQTGSGIFGSPSTYTVNGQQFVAVPSGFG 521          
BLAST of mRNA_P-wetherbeei_contig54924.1.1 vs. uniprot
Match: A0A382Z2N7_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382Z2N7_9ZZZZ)

HSP 1 Score: 170 bits (431), Expect = 4.100e-50
Identity = 81/122 (66.39%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    1 PIVNPDKVPTYDYEAKDICPASEGGKWWNPMSYSPAKQMVFIPSREICTDIKSAK-------GERAEGKPHWGIGSIKWNKGHGQLVAFDAKSGNKKWTVEAPSPFMSGVLTTGGGLVFAGT 345
            PI N DKVPTYDYEAKDICPASEGGKWWNPM+ +P    VF+PSREIC DIKSA         E   GKP+WGIG+I WN GHGQLVAFD ++G K W V+  SPF SG+L+T GGL+FAGT
Sbjct:  139 PIWNMDKVPTYDYEAKDICPASEGGKWWNPMTVNPETGWVFVPSREICVDIKSAPLGEGLNPDEITVGKPYWGIGTIGWNTGHGQLVAFDGRTGEKMWVVKDRSPFTSGLLSTRGGLLFAGT 260          
BLAST of mRNA_P-wetherbeei_contig54924.1.1 vs. uniprot
Match: A0A7V3UJL7_9BACT (PQQ-dependent dehydrogenase, methanol/ethanol family n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3UJL7_9BACT)

HSP 1 Score: 162 bits (410), Expect = 3.340e-44
Identity = 76/163 (46.63%), Postives = 113/163 (69.33%), Query Frame = 1
Query:    1 PIVN-PDKVPTYDYEAKDICPASEGGKWWNPMSYSPAKQMVFIPSREICTDIKSAKGERAEGKPHWGIGSIKWNKGHGQLVAFDAKSGNKKWTVEAPSPFMSGVLTTGGGLVFAGTPEGEFKAYDQDNGKELWSYQTGSGIVGSPVSYFIDGKQYVAVPSGFG 486
            PI+N P+K   YD   K+I P+ EGGK W+PM+Y+P K + ++P+ ++  D+++ + E   G+ +     ++++ G+G L+A +A +G  KW     SP  SGVL+T GGLVFAG PEGEF A++ + G+ LW +QTGSGIVG+P ++ +DGKQYVAVPSG G
Sbjct:  373 PIMNWPEKDVHYDKVTKNISPSLEGGKEWHPMAYNPHKGVAYVPTFQLTMDLQAMRQEWKRGELYLAAKVLEYHPGYGSLIAIEAATGKTKWVWNNKSPMTSGVLSTDGGLVFAGNPEGEFMAFNDETGELLWKFQTGSGIVGNPTTFSVDGKQYVAVPSGIG 535          
BLAST of mRNA_P-wetherbeei_contig54924.1.1 vs. uniprot
Match: A0A317GVM2_9PROT (PQQ-dependent dehydrogenase, methanol/ethanol family n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317GVM2_9PROT)

HSP 1 Score: 142 bits (357), Expect = 1.320e-37
Identity = 72/163 (44.17%), Postives = 101/163 (61.96%), Query Frame = 1
Query:    1 PIVN-PDKVPTYDYEAKDICPASEGGKWWNPMSYSPAKQMVFIPSREICTDIKSAKGERAEGKPHWGIGSIKWNKGHGQLVAFDAKSGNKKWTVEAPSPFMSGVLTTGGGLVFAGTPEGEFKAYDQDNGKELWSYQTGSGIVGSPVSYFIDGKQYVAVPSGFG 486
            PI N P+K   YD    DI P+ +GGK W+PMSYS   +MV++P  +   D+++ K E   G+ + G   + +N G G + AFDA +G   W      P  SG+LTTGGGL+F G PEG F A D + G++LW++Q GSGI G+P ++  +GKQYVA+  G G
Sbjct:  213 PIYNYPEKDVVYDKVTTDIAPSLDGGKEWHPMSYSKRTKMVYVPVYDFAMDLQAKKMEWKRGEWYLGAKVLTFNAGAGHIKAFDAATGALVWGKAQSYPATSGILTTGGGLLFYGDPEGYFHALDDETGEDLWAFQVGSGIHGNPTTFSANGKQYVAIVWGAG 375          
BLAST of mRNA_P-wetherbeei_contig54924.1.1 vs. uniprot
Match: A0A2E8DAH9_9PLAN (PQQ-dependent dehydrogenase, methanol/ethanol family n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8DAH9_9PLAN)

HSP 1 Score: 140 bits (352), Expect = 1.230e-35
Identity = 71/163 (43.56%), Postives = 97/163 (59.51%), Query Frame = 1
Query:    1 PIVNPDKVPTYDYEAKDICPASEGGKWWNPMSYSPAKQMVFIPSREICTDIKSAKGERAEGKPHWGIG-SIKWNKGHGQLVAFDAKSGNKKWTVEAPSPFMSGVLTTGGGLVFAGTPEGEFKAYDQDNGKELWSYQTGSGIVGSPVSYFIDGKQYVAVPSGFG 486
            P V+PD +PT   E   +CP + GGK WNPM+Y P   + ++P  E C    S K    +G+P+WG   ++   +  G L A DA +G  KW     SP ++GVL T GGLVF G  EG   AYD D+G +LW +Q GSG   SP++Y ++GKQY+AV  G+G
Sbjct:  472 PFVSPDALPTE--EGVRVCPGAAGGKEWNPMAYHPGTGLAYVPVIENCAKFTSGKAFFIKGQPYWGSSLTLIDGEAKGALRAIDAVTGEIKWDKPTRSPMVAGVLATAGGLVFTGDAEGFLTAYDADSGDDLWHFQCGSGHHASPITYTLEGKQYLAVCVGWG 632          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54924.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019BAB90D6.310e-11296.91PQQ-dependent dehydrogenase, methanol/ethanol fami... [more]
A0A2E6QN62_9PROT7.110e-8273.37Quinonprotein alcohol dehydrogenase n=1 Tax=Rhodos... [more]
A0A6N8UWZ4_9PROT2.450e-8071.60PQQ-dependent dehydrogenase, methanol/ethanol fami... [more]
A0A836U5N4_9PROT2.440e-7568.05PQQ-dependent dehydrogenase, methanol/ethanol fami... [more]
A0A2E9E502_9PROT2.580e-7466.86Quinonprotein alcohol dehydrogenase n=2 Tax=Rhodos... [more]
A0A0S8D7Z6_9PROT1.530e-6562.13Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A382Z2N7_9ZZZZ4.100e-5066.39Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7V3UJL7_9BACT3.340e-4446.63PQQ-dependent dehydrogenase, methanol/ethanol fami... [more]
A0A317GVM2_9PROT1.320e-3744.17PQQ-dependent dehydrogenase, methanol/ethanol fami... [more]
A0A2E8DAH9_9PLAN1.230e-3543.56PQQ-dependent dehydrogenase, methanol/ethanol fami... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54924contigP-wetherbeei_contig54924:1..486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1000565.METUNv1_02321
PFAMsCytochrome_CBB3,PQQ,PQQ_2
Model size486
Max annot lvl206389|Rhodocyclales
KEGG koko:K17760
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.2e-35
EggNOG OGsCOG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2VHVH@28216|Betaproteobacteria,2KXBU@206389|Rhodocyclales
EC1.1.9.1
DescriptionPQQ-like domain
Cds size486
COG categoryC
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.109473-CDS-P-wetherbeei_contig54924:0..4861683186819.109473-CDS-P-wetherbeei_contig54924:0..486Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54924 1..486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54924.1.1prot_P-wetherbeei_contig54924.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54924 1..486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54924.1.1

>prot_P-wetherbeei_contig54924.1.1 ID=prot_P-wetherbeei_contig54924.1.1|Name=mRNA_P-wetherbeei_contig54924.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
PIVNPDKVPTYDYEAKDICPASEGGKWWNPMSYSPAKQMVFIPSREICTD
IKSAKGERAEGKPHWGIGSIKWNKGHGQLVAFDAKSGNKKWTVEAPSPFM
SGVLTTGGGLVFAGTPEGEFKAYDQDNGKELWSYQTGSGIVGSPVSYFID
GKQYVAVPSGFG
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mRNA from alignment at P-wetherbeei_contig54924:1..486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54924.1.1 ID=mRNA_P-wetherbeei_contig54924.1.1|Name=mRNA_P-wetherbeei_contig54924.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig54924:1..486+ (Phaeothamnion wetherbeei SAG_119_79)
CCCATCGTCAATCCCGACAAGGTTCCCACCTACGACTACGAAGCGAAAGA CATCTGCCCGGCTTCCGAAGGCGGAAAATGGTGGAACCCGATGAGCTATA GCCCGGCCAAGCAGATGGTATTCATACCCAGCCGGGAGATCTGCACGGAC ATCAAGAGTGCCAAGGGTGAGCGCGCCGAGGGCAAACCGCATTGGGGCAT CGGCAGCATCAAGTGGAACAAAGGACACGGTCAGCTGGTTGCATTCGATG CAAAAAGCGGAAACAAGAAATGGACCGTCGAAGCACCGTCGCCTTTCATG AGCGGCGTCCTGACAACCGGCGGCGGCTTGGTTTTCGCCGGAACGCCAGA AGGCGAGTTCAAGGCCTATGACCAGGACAACGGCAAGGAACTGTGGTCAT ACCAGACCGGCTCCGGCATTGTCGGCAGCCCGGTCAGTTATTTCATCGAT GGCAAACAGTACGTTGCCGTGCCCTCGGGCTTTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54924:1..486+

>mRNA_P-wetherbeei_contig54924.1.1 ID=mRNA_P-wetherbeei_contig54924.1.1|Name=mRNA_P-wetherbeei_contig54924.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig54924:1..486+ (Phaeothamnion wetherbeei SAG_119_79)
CCCATCGTCAATCCCGACAAGGTTCCCACCTACGACTACGAAGCGAAAGA
CATCTGCCCGGCTTCCGAAGGCGGAAAATGGTGGAACCCGATGAGCTATA
GCCCGGCCAAGCAGATGGTATTCATACCCAGCCGGGAGATCTGCACGGAC
ATCAAGAGTGCCAAGGGTGAGCGCGCCGAGGGCAAACCGCATTGGGGCAT
CGGCAGCATCAAGTGGAACAAAGGACACGGTCAGCTGGTTGCATTCGATG
CAAAAAGCGGAAACAAGAAATGGACCGTCGAAGCACCGTCGCCTTTCATG
AGCGGCGTCCTGACAACCGGCGGCGGCTTGGTTTTCGCCGGAACGCCAGA
AGGCGAGTTCAAGGCCTATGACCAGGACAACGGCAAGGAACTGTGGTCAT
ACCAGACCGGCTCCGGCATTGTCGGCAGCCCGGTCAGTTATTTCATCGAT
GGCAAACAGTACGTTGCCGTGCCCTCGGGCTTTGGC
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