mRNA_P-wetherbeei_contig5491.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5491.1.1
Unique NamemRNA_P-wetherbeei_contig5491.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5491.1.1 vs. uniprot
Match: A0A521VBT7_9PROT (SDR family oxidoreductase n=4 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521VBT7_9PROT)

HSP 1 Score: 280 bits (716), Expect = 5.010e-93
Identity = 135/154 (87.66%), Postives = 145/154 (94.16%), Query Frame = 1 
Query:    1 MFKDGLLKDKRILVTGGGTGLGREIAERYLALGAEVWIAGRRGPTLEATAKDLMAAHGGTVRTHSVDIRDAQAVDAMVERIWSEAGPLTGLVNNAAGNFISPTKDLTVNGFNAIANIVFHGSFYVTHAVGRRWIAGGHKGSVISILVTWVWTGS 462
            MFKDGLLK KRILVTGGGTGLGREIA RYL LGAE+W+ GRRGP LEATAK+L A HGG+VRTH+VDIRDAQAVDAMV+RIW ++GPLTGLVNNAAGNFISPTKDLT NGFNAIANIVFHG+FYVTHAVG+RWIAGGHKGSVISILVTWVWTGS
Sbjct:    1 MFKDGLLKGKRILVTGGGTGLGREIAARYLELGAELWLCGRRGPVLEATAKELAARHGGSVRTHAVDIRDAQAVDAMVQRIWDQSGPLTGLVNNAAGNFISPTKDLTPNGFNAIANIVFHGTFYVTHAVGKRWIAGGHKGSVISILVTWVWTGS 154
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BLAST of mRNA_P-wetherbeei_contig5491.1.1 vs. uniprot
Match: A0A0S8B328_9PROT (Short-chain dehydrogenase n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B328_9PROT)

HSP 1 Score: 274 bits (701), Expect = 9.530e-91
Identity = 133/154 (86.36%), Postives = 143/154 (92.86%), Query Frame = 1 
Query:    1 MFKDGLLKDKRILVTGGGTGLGREIAERYLALGAEVWIAGRRGPTLEATAKDLMAAHGGTVRTHSVDIRDAQAVDAMVERIWSEAGPLTGLVNNAAGNFISPTKDLTVNGFNAIANIVFHGSFYVTHAVGRRWIAGGHKGSVISILVTWVWTGS 462
            MFKDGLL+ KRIL+TGGGTGLG+EIAERYL LGAE+W+AGRRG  LE TAK L A HGGTVRTH+VDIRDAQAVDAMV+RIW E+GPLTGLVNNAAGNFISPTKDLT NGFNAIANIVFHG+FYVTHAVGRRWIAGG KGSV+SILVTWVWTGS
Sbjct:    1 MFKDGLLQGKRILITGGGTGLGKEIAERYLQLGAELWLAGRRGGVLEDTAKSLTAKHGGTVRTHAVDIRDAQAVDAMVQRIWDESGPLTGLVNNAAGNFISPTKDLTPNGFNAIANIVFHGTFYVTHAVGRRWIAGGDKGSVVSILVTWVWTGS 154
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BLAST of mRNA_P-wetherbeei_contig5491.1.1 vs. uniprot
Match: A0A536SPG1_9PROT (SDR family oxidoreductase n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SPG1_9PROT)

HSP 1 Score: 260 bits (664), Expect = 4.230e-85
Identity = 127/154 (82.47%), Postives = 137/154 (88.96%), Query Frame = 1 
Query:    1 MFKDGLLKDKRILVTGGGTGLGREIAERYLALGAEVWIAGRRGPTLEATAKDLMAAHGGTVRTHSVDIRDAQAVDAMVERIWSEAGPLTGLVNNAAGNFISPTKDLTVNGFNAIANIVFHGSFYVTHAVGRRWIAGGHKGSVISILVTWVWTGS 462
            MFK+GLLK KRILVTGGGTGLGREIA RYLALGA++W+AGRRG  LE  AK L   HGG VRTHS+DIRDA AVDAMV+RIW E GPLTGLVNNAAGNFISPTKDLT NGFNAIANIVFHG+FYVT AVG+RWIAGGHKGS++SILVTWV TGS
Sbjct:    1 MFKEGLLKGKRILVTGGGTGLGREIAARYLALGADLWLAGRRGGVLEDAAKQLTEKHGGRVRTHSIDIRDAAAVDAMVQRIWDEDGPLTGLVNNAAGNFISPTKDLTANGFNAIANIVFHGTFYVTQAVGKRWIAGGHKGSIVSILVTWVHTGS 154
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BLAST of mRNA_P-wetherbeei_contig5491.1.1 vs. uniprot
Match: A0A521YPZ4_9PROT (SDR family oxidoreductase n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521YPZ4_9PROT)

HSP 1 Score: 256 bits (654), Expect = 1.390e-83
Identity = 124/154 (80.52%), Postives = 139/154 (90.26%), Query Frame = 1 
Query:    1 MFKDGLLKDKRILVTGGGTGLGREIAERYLALGAEVWIAGRRGPTLEATAKDLMAAHGGTVRTHSVDIRDAQAVDAMVERIWSEAGPLTGLVNNAAGNFISPTKDLTVNGFNAIANIVFHGSFYVTHAVGRRWIAGGHKGSVISILVTWVWTGS 462
            MFKDGLL+ KRIL+TGGGTGLG+EIA RYL LGAE+W+AGRRG  LE+TAK+L   +GG+V+T SVDIRDA AVDAMV+RIW E GPLTGLVNNAAGNFISPTKDL+ NGFNAIAN VFHG+FYVTHAVG+RWIAGGHKGSV+SILVTWV TGS
Sbjct:    1 MFKDGLLRGKRILITGGGTGLGKEIAARYLELGAELWLAGRRGSVLESTAKELTGKYGGSVKTLSVDIRDAAAVDAMVQRIWDETGPLTGLVNNAAGNFISPTKDLSPNGFNAIANTVFHGTFYVTHAVGKRWIAGGHKGSVVSILVTWVHTGS 154
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BLAST of mRNA_P-wetherbeei_contig5491.1.1 vs. uniprot
Match: A0A1F4F683_9PROT (Short-chain dehydrogenase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F683_9PROT)

HSP 1 Score: 255 bits (652), Expect = 2.800e-83
Identity = 126/154 (81.82%), Postives = 137/154 (88.96%), Query Frame = 1 
Query:    1 MFKDGLLKDKRILVTGGGTGLGREIAERYLALGAEVWIAGRRGPTLEATAKDLMAAHGGTVRTHSVDIRDAQAVDAMVERIWSEAGPLTGLVNNAAGNFISPTKDLTVNGFNAIANIVFHGSFYVTHAVGRRWIAGGHKGSVISILVTWVWTGS 462
            MFK+GLLK KRILVTGGGTGLG+EIA RYL LGAE+WI GRRG  LEA AK+L   HGG+VRTH+VDIRDA AVDAMV+RIW E GP+TGLVNNAAGNFISPTKDL+ NGFNAIANIVFHG+FYVTHAVGRRWIA G KGSVISI+VTWV TGS
Sbjct:    1 MFKEGLLKGKRILVTGGGTGLGKEIAARYLQLGAELWICGRRGGVLEAAAKELTGRHGGSVRTHAVDIRDAAAVDAMVQRIWDETGPITGLVNNAAGNFISPTKDLSPNGFNAIANIVFHGTFYVTHAVGRRWIADGIKGSVISIVVTWVHTGS 154
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BLAST of mRNA_P-wetherbeei_contig5491.1.1 vs. uniprot
Match: A0A1Q7VMZ7_9PROT (Short-chain dehydrogenase n=1 Tax=Betaproteobacteria bacterium 13_1_20CM_3_63_8 TaxID=1805040 RepID=A0A1Q7VMZ7_9PROT)

HSP 1 Score: 252 bits (644), Expect = 4.040e-82
Identity = 127/154 (82.47%), Postives = 137/154 (88.96%), Query Frame = 1 
Query:    1 MFKDGLLKDKRILVTGGGTGLGREIAERYLALGAEVWIAGRRGPTLEATAKDLMAAHGGTVRTHSVDIRDAQAVDAMVERIWSEAGPLTGLVNNAAGNFISPTKDLTVNGFNAIANIVFHGSFYVTHAVGRRWIAGGHKGSVISILVTWVWTGS 462
            MFK+GLLK KRILVTGGGTG+GREIA RYL LGAEVWIAGRRG  LE TAK+L    G  VRTH VDIRDA AVDAMV+RIW E+GPL+GLVNNAAGNFISPTKDL+ NGFNAIANIVFHG+FYVTHAVG+RWIAGGHKGSV+SILVTWV TGS
Sbjct:    1 MFKEGLLKGKRILVTGGGTGIGREIAARYLELGAEVWIAGRRGAVLEDTAKEL----GRNVRTHVVDIRDAAAVDAMVQRIWDESGPLSGLVNNAAGNFISPTKDLSPNGFNAIANIVFHGTFYVTHAVGKRWIAGGHKGSVVSILVTWVHTGS 150
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BLAST of mRNA_P-wetherbeei_contig5491.1.1 vs. uniprot
Match: A0A537C4T6_9PROT (SDR family oxidoreductase n=4 Tax=Bacteria TaxID=2 RepID=A0A537C4T6_9PROT)

HSP 1 Score: 251 bits (640), Expect = 1.860e-81
Identity = 121/154 (78.57%), Postives = 138/154 (89.61%), Query Frame = 1 
Query:    1 MFKDGLLKDKRILVTGGGTGLGREIAERYLALGAEVWIAGRRGPTLEATAKDLMAAHGGTVRTHSVDIRDAQAVDAMVERIWSEAGPLTGLVNNAAGNFISPTKDLTVNGFNAIANIVFHGSFYVTHAVGRRWIAGGHKGSVISILVTWVWTGS 462
            MFK+GLLK KRILVTGGGTGLG+EIA +YL LGAE+W+ GRRG  LE+TAK+L+   GG VRTH+VDIRDA AVDAMV+RIW E+GPLTGLVNNAAGNFISPT+DLT NGFNAIANIVFHG+FYVTHAVG+RWIAGG  GSV++I+VTWV TGS
Sbjct:    1 MFKEGLLKGKRILVTGGGTGLGKEIAAKYLDLGAELWLCGRRGAVLESTAKELLGGRGGVVRTHAVDIRDAAAVDAMVQRIWDESGPLTGLVNNAAGNFISPTQDLTPNGFNAIANIVFHGTFYVTHAVGKRWIAGGLPGSVLTIVVTWVHTGS 154
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BLAST of mRNA_P-wetherbeei_contig5491.1.1 vs. uniprot
Match: A7HQ90_PARL1 (Short-chain dehydrogenase/reductase SDR n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A7HQ90_PARL1)

HSP 1 Score: 238 bits (606), Expect = 2.930e-76
Identity = 118/153 (77.12%), Postives = 131/153 (85.62%), Query Frame = 1 
Query:    1 MFKDGLLKDKRILVTGGGTGLGREIAERYLALGAEVWIAGRRGPTLEATAKDLMAAHGGTVRTHSVDIRDAQAVDAMVERIWSEAGPLTGLVNNAAGNFISPTKDLTVNGFNAIANIVFHGSFYVTHAVGRRWIAGGHKGSVISILVTWVWTG 459
            MF+DGLLK KRILVTGGGTGLG+E+AE YL LGAEV+I GRR   L+ TAK+LMA HGG+V+THSVDIR AQAVD MV  IW++ GPLTGLVNNAAGNFISPTKDL+  GF+AIANIVFHGSFYVTHA+GRRWI    KGSVISIL TWVW G
Sbjct:    4 MFRDGLLKGKRILVTGGGTGLGKEMAEDYLRLGAEVYICGRRKNVLDETAKELMARHGGSVKTHSVDIRVAQAVDDMVAEIWADGGPLTGLVNNAAGNFISPTKDLSPRGFDAIANIVFHGSFYVTHAIGRRWIEDKVKGSVISILTTWVWNG 156
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BLAST of mRNA_P-wetherbeei_contig5491.1.1 vs. uniprot
Match: A0A536SDK5_9PROT (SDR family NAD(P)-dependent oxidoreductase (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SDK5_9PROT)

HSP 1 Score: 232 bits (592), Expect = 8.940e-76
Identity = 114/154 (74.03%), Postives = 131/154 (85.06%), Query Frame = 1 
Query:    1 MFKDGLLKDKRILVTGGGTGLGREIAERYLALGAEVWIAGRRGPTLEATAKDLMAAHGGTVRTHSVDIRDAQAVDAMVERIWSEAGPLTGLVNNAAGNFISPTKDLTVNGFNAIANIVFHGSFYVTHAVGRRWIAGGHKGSVISILVTWVWTGS 462
            MF+DGLLK KRILVTGGGTGLG EIA +YL LGA+++I GRR   L+ TA +L A HGG+V+    DIRDAQAVDAMV+ IW + GPLTGLVNNAAGNFIS T+DL+  GF+AIANIVFHG+FYVTHAVG+RWIAGGH GSVISI+VTWVWTGS
Sbjct:    1 MFRDGLLKGKRILVTGGGTGLGCEIAAKYLELGADLYICGRRKSVLDKTAAELTAKHGGSVKCLPADIRDAQAVDAMVQAIWDDGGPLTGLVNNAAGNFISRTEDLSPRGFDAIANIVFHGTFYVTHAVGKRWIAGGHTGSVISIVVTWVWTGS 154
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BLAST of mRNA_P-wetherbeei_contig5491.1.1 vs. uniprot
Match: A0A536YU09_9PROT (SDR family oxidoreductase n=6 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YU09_9PROT)

HSP 1 Score: 231 bits (590), Expect = 6.890e-74
Identity = 112/154 (72.73%), Postives = 132/154 (85.71%), Query Frame = 1 
Query:    1 MFKDGLLKDKRILVTGGGTGLGREIAERYLALGAEVWIAGRRGPTLEATAKDLMAAHGGTVRTHSVDIRDAQAVDAMVERIWSEAGPLTGLVNNAAGNFISPTKDLTVNGFNAIANIVFHGSFYVTHAVGRRWIAGGHKGSVISILVTWVWTGS 462
            MF+  LLK KRILVTGGGTGLGRE+  +YL LGA+++I GRR   L+ TA +L A HGG+V+ H+VDIRDA +VDAMV+ IW + GPLTGLVNNAAGNFIS T+DL+  GF+AIANIVFHG+FYVTHAVG+RWIAGGHKGSVISI+VTWVWTGS
Sbjct:    1 MFQKDLLKGKRILVTGGGTGLGREMTAKYLELGADLYICGRRREPLDKTAAELTAKHGGSVKCHTVDIRDAGSVDAMVQAIWEDGGPLTGLVNNAAGNFISRTEDLSPRGFDAIANIVFHGTFYVTHAVGKRWIAGGHKGSVISIVVTWVWTGS 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5491.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521VBT7_9PROT5.010e-9387.66SDR family oxidoreductase n=4 Tax=unclassified Bet... [more]
A0A0S8B328_9PROT9.530e-9186.36Short-chain dehydrogenase n=1 Tax=Betaproteobacter... [more]
A0A536SPG1_9PROT4.230e-8582.47SDR family oxidoreductase n=3 Tax=Betaproteobacter... [more]
A0A521YPZ4_9PROT1.390e-8380.52SDR family oxidoreductase n=2 Tax=unclassified Bet... [more]
A0A1F4F683_9PROT2.800e-8381.82Short-chain dehydrogenase n=1 Tax=Betaproteobacter... [more]
A0A1Q7VMZ7_9PROT4.040e-8282.47Short-chain dehydrogenase n=1 Tax=Betaproteobacter... [more]
A0A537C4T6_9PROT1.860e-8178.57SDR family oxidoreductase n=4 Tax=Bacteria TaxID=2... [more]
A7HQ90_PARL12.930e-7677.12Short-chain dehydrogenase/reductase SDR n=5 Tax=Al... [more]
A0A536SDK5_9PROT8.940e-7674.03SDR family NAD(P)-dependent oxidoreductase (Fragme... [more]
A0A536YU09_9PROT6.890e-7472.73SDR family oxidoreductase n=6 Tax=Betaproteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5491contigP-wetherbeei_contig5491:1..462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog402881.Plav_0450
Preferred nameMA20_16350
PFAMsadh_short_C2
Model size462
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.8e-77
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1PFUB@1224|Proteobacteria,2U149@28211|Alphaproteobacteria,1JQM5@119043|Rhodobiaceae
DescriptionPFAM short-chain dehydrogenase reductase SDR
Cds size462
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186818.9162855-CDS-P-wetherbeei_contig5491:0..4621683186818.9162855-CDS-P-wetherbeei_contig5491:0..462Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5491 1..462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5491.1.1prot_P-wetherbeei_contig5491.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5491 1..462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5491.1.1

>prot_P-wetherbeei_contig5491.1.1 ID=prot_P-wetherbeei_contig5491.1.1|Name=mRNA_P-wetherbeei_contig5491.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
MFKDGLLKDKRILVTGGGTGLGREIAERYLALGAEVWIAGRRGPTLEATA
KDLMAAHGGTVRTHSVDIRDAQAVDAMVERIWSEAGPLTGLVNNAAGNFI
SPTKDLTVNGFNAIANIVFHGSFYVTHAVGRRWIAGGHKGSVISILVTWV
WTGS
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mRNA from alignment at P-wetherbeei_contig5491:1..462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5491.1.1 ID=mRNA_P-wetherbeei_contig5491.1.1|Name=mRNA_P-wetherbeei_contig5491.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig5491:1..462- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCAAGGACGGACTGCTCAAGGACAAGCGGATCCTCGTCACTGGCGG
GGGCACCGGCCTTGGCCGGGAAATCGCGGAGCGCTACCTTGCGCTCGGCG
CCGAGGTCTGGATCGCGGGCCGCCGCGGTCCCACGCTCGAAGCCACCGCG
AAGGACCTGATGGCGGCCCACGGCGGCACGGTCCGCACGCATTCGGTCGA
TATCCGCGATGCGCAGGCTGTCGATGCGATGGTCGAGCGGATCTGGTCCG
AGGCCGGGCCGCTGACCGGCTTGGTCAACAACGCAGCGGGCAACTTCATC
AGCCCCACCAAGGACCTAACGGTCAATGGCTTCAACGCGATCGCCAACAT
CGTGTTCCACGGCAGCTTCTACGTGACCCACGCAGTGGGCAGGCGCTGGA
TCGCCGGTGGCCACAAGGGGTCGGTGATCTCGATCCTCGTGACCTGGGTG
TGGACAGGCTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5491:1..462-

>mRNA_P-wetherbeei_contig5491.1.1 ID=mRNA_P-wetherbeei_contig5491.1.1|Name=mRNA_P-wetherbeei_contig5491.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig5491:1..462- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCAAGGACGGACTGCTCAAGGACAAGCGGATCCTCGTCACTGGCGG
GGGCACCGGCCTTGGCCGGGAAATCGCGGAGCGCTACCTTGCGCTCGGCG
CCGAGGTCTGGATCGCGGGCCGCCGCGGTCCCACGCTCGAAGCCACCGCG
AAGGACCTGATGGCGGCCCACGGCGGCACGGTCCGCACGCATTCGGTCGA
TATCCGCGATGCGCAGGCTGTCGATGCGATGGTCGAGCGGATCTGGTCCG
AGGCCGGGCCGCTGACCGGCTTGGTCAACAACGCAGCGGGCAACTTCATC
AGCCCCACCAAGGACCTAACGGTCAATGGCTTCAACGCGATCGCCAACAT
CGTGTTCCACGGCAGCTTCTACGTGACCCACGCAGTGGGCAGGCGCTGGA
TCGCCGGTGGCCACAAGGGGTCGGTGATCTCGATCCTCGTGACCTGGGTG
TGGACAGGCTCG
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