mRNA_P-wetherbeei_contig54897.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54897.1.1
Unique NamemRNA_P-wetherbeei_contig54897.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54897.1.1 vs. uniprot
Match: A0A371BDD9_9HYPH (Uncharacterized protein n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371BDD9_9HYPH)

HSP 1 Score: 207 bits (527), Expect = 8.920e-65
Identity = 105/168 (62.50%), Postives = 129/168 (76.79%), Query Frame = 1
Query:    1 DLSDFNAAVEAASAHNRVAIGYLRTGNTDLASLEVDRLREAWARVTER---KRPAVFAGNQLYVTVMLDIATRLVATDMMLNSGREDAARQSLIGIRDGLYDLRKSAGVVVLADCVRDANELMDQLMLYNDRALDWDKGKTAPDIAAKAARYGETLKRCDGIAGDTVR 495
            DL+DFNAAVE A++HNRVA GYLRTGNTDLASLE+DRLRE+WA +T+R   KRP  F    LY T +L I+T LVA DMML +GR DAAR +L G+R  LYDLRKSAG+VVLADC+RDAN + D +M+YNDR L+WD   TA  ++A++A Y +TL RC+ IA   VR
Sbjct:   26 DLADFNAAVERAASHNRVADGYLRTGNTDLASLELDRLRESWAALTQRFGGKRPEPFKDGTLYTTTLLKISTGLVAADMMLQTGRMDAARAALDGMRRDLYDLRKSAGIVVLADCIRDANAIADAIMVYNDRNLNWDNSDTARGLSARSAEYLKTLDRCNSIAAPDVR 193          
BLAST of mRNA_P-wetherbeei_contig54897.1.1 vs. uniprot
Match: UPI0010BF5BDF (hypothetical protein n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI0010BF5BDF)

HSP 1 Score: 203 bits (516), Expect = 4.020e-63
Identity = 105/168 (62.50%), Postives = 123/168 (73.21%), Query Frame = 1
Query:    1 DLSDFNAAVEAASAHNRVAIGYLRTGNTDLASLEVDRLREAWARVTER---KRPAVFAGNQLYVTVMLDIATRLVATDMMLNSGREDAARQSLIGIRDGLYDLRKSAGVVVLADCVRDANELMDQLMLYNDRALDWDKGKTAPDIAAKAARYGETLKRCDGIAGDTVR 495
            DL+DFN AVE A++HNRVA GYLRTGN DLASLE+DRLR+ WA +T+R   KRP  F    LY T +L I+T LV  DMML SGR DAAR +L G+R  LYDLRKSAGVVVLADCVRDAN++ D +M YNDR LDW    T+  ++A+ A Y  TL RCDGIA   VR
Sbjct:   25 DLADFNDAVERAASHNRVADGYLRTGNVDLASLELDRLRDEWAALTQRFGGKRPGAFKDGTLYTTTLLKISTGLVGADMMLQSGRMDAARAALDGMRRDLYDLRKSAGVVVLADCVRDANKIADAIMAYNDRNLDWTNPNTSRGLSARTADYLSTLDRCDGIAAPDVR 192          
BLAST of mRNA_P-wetherbeei_contig54897.1.1 vs. uniprot
Match: A0A0Q7TKQ5_9HYPH (Uncharacterized protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TKQ5_9HYPH)

HSP 1 Score: 200 bits (508), Expect = 6.560e-62
Identity = 104/168 (61.90%), Postives = 126/168 (75.00%), Query Frame = 1
Query:    1 DLSDFNAAVEAASAHNRVAIGYLRTGNTDLASLEVDRLREAWARVTER---KRPAVFAGNQLYVTVMLDIATRLVATDMMLNSGREDAARQSLIGIRDGLYDLRKSAGVVVLADCVRDANELMDQLMLYNDRALDWDKGKTAPDIAAKAARYGETLKRCDGIAGDTVR 495
            +L DFNAAVE A++HNRVA GYLRTGNTDLASLE+DRLREAWA +TER    RP  F    LY T +L I+T LVA DMMLNSGR D+AR SL GIR  LY+LR+SAG+VVLADCVRDAN + D+LM+Y+ RA+DWD  +    ++  A+ Y +T+ RCD IA   VR
Sbjct:   26 ELDDFNAAVERAASHNRVADGYLRTGNTDLASLEIDRLREAWAALTERFGGHRPEAFKDGNLYTTTLLKISTSLVAADMMLNSGRADSARASLEGIRTDLYNLRRSAGIVVLADCVRDANAIADRLMVYH-RAIDWDNAEQRKALSDGASDYVKTMDRCDNIASPDVR 192          
BLAST of mRNA_P-wetherbeei_contig54897.1.1 vs. uniprot
Match: A0A345ZTT3_9HYPH (Uncharacterized protein n=2 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZTT3_9HYPH)

HSP 1 Score: 183 bits (465), Expect = 1.240e-55
Identity = 93/158 (58.86%), Postives = 113/158 (71.52%), Query Frame = 1
Query:   10 DFNAAVEAASAHNRVAIGYLRTGNTDLASLEVDRLREAWARVTERKRPAVFAGNQLYVTVMLDIATRLVATDMMLNSGREDAARQSLIGIRDGLYDLRKSAGVVVLADCVRDANELMDQLMLYNDRALDWDKGKTAPDIAAKAARYGETLKRCDGIAG 483
            DF+AA++A    NR AIG L   N +LA LE++RLR AW +V+ERKRP  F  + LY TVM D+ATRL++ DMML  GR D AR +L+GIRD LYDLRKSAG+VVLADCVRDAN  M+ L  + + A D  KG TA D+  KA RYG+TL  CD IAG
Sbjct:   15 DFSAAIDAVGKQNRAAIGALENRNVELAELELNRLRAAWRQVSERKRPDAFKNSALYTTVMTDVATRLISADMMLKFGRPDVARTALLGIRDNLYDLRKSAGIVVLADCVRDANSAMEALAAFEEHAPDVVKGDTA-DLTDKAKRYGDTLTHCDAIAG 171          
BLAST of mRNA_P-wetherbeei_contig54897.1.1 vs. uniprot
Match: A0A1Q4DP52_9HYPH (Uncharacterized protein n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DP52_9HYPH)

HSP 1 Score: 167 bits (423), Expect = 4.900e-49
Identity = 92/167 (55.09%), Postives = 117/167 (70.06%), Query Frame = 1
Query:    4 LSDFNAAVEAASAHNRVAIGYLRTGNTDLASLEVDRLREAWARVTE---RKRPAVFAGNQLYVTVMLDIATRLVATDMMLNSGREDAARQSLIGIRDGLYDLRKSAGVVVLADCVRDANELMDQLMLYNDRALDWDKGKTAPDIAAKAARYGETLKRCDGIAGDTVR 495
            L+DFN AVE A+AHNRVA+GYLRTGNTDLA+LE++RLR AWA V     + RP  FA  +L+ T + DI+TRLV  DMML+SGR +AA  +L G+RD L +LR+ +GV VLADCV DAN  M  L   + + L W    TA D+AAKA  Y  T++RCDG+A   V+
Sbjct:   29 LADFNQAVENAAAHNRVALGYLRTGNTDLATLELERLRGAWATVVGTFGKDRPDAFAP-ELFTTTLTDISTRLVTADMMLSSGRAEAAETALAGVRDALSNLRRKSGVAVLADCVLDANGAMAALGALDRQPLAWSPALTA-DMAAKAQAYRATVQRCDGMAAPEVK 193          
BLAST of mRNA_P-wetherbeei_contig54897.1.1 vs. uniprot
Match: A0A537KZF7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537KZF7_9PROT)

HSP 1 Score: 147 bits (372), Expect = 2.200e-41
Identity = 82/165 (49.70%), Postives = 103/165 (62.42%), Query Frame = 1
Query:    1 DLSDFNAAVEAASAHNRVAIGYLRTGNTDLASLEVDRLREAWARVTERKRPAVFAGNQLYVTVMLDIATRLVATDMMLNSGREDAARQSLIGIRDGLYDLRKSAGVVVLADCVRDANELMDQLMLYNDRALDWDKGKTAPDIAAKAARYGETLKRCDGIAGDTVR 495
            DL DFN AVEAA +H RVA  YLRTGN DLA LE++ +REAW +V+   RPA F   Q Y   +L+IA  LV   ++LN GR D AR+SL  +R  L  LR+  GV VLADCV DAN  MD L  + D+  DW+       ++A A  Y  TL+RCDG+A   +R
Sbjct:   33 DLDDFNRAVEAAMSHRRVAAEYLRTGNIDLAVLEIEGMREAWGKVSTLPRPAAFNDQQRYTGTILEIAASLVGISLVLNLGRPDVARESLGTVRASLSRLRRENGVAVLADCVLDANIAMDALFAH-DKEPDWES------VSAGAESYRGTLQRCDGMAPAGIR 190          
BLAST of mRNA_P-wetherbeei_contig54897.1.1 vs. uniprot
Match: A0A1Q3W2Z8_9BRAD (Uncharacterized protein n=1 Tax=Afipia sp. 64-13 TaxID=1895701 RepID=A0A1Q3W2Z8_9BRAD)

HSP 1 Score: 136 bits (342), Expect = 7.720e-37
Identity = 74/169 (43.79%), Postives = 107/169 (63.31%), Query Frame = 1
Query:    1 DLSDFNAAVEAASAHNRVAIGYLRTGNTDLASLEVDRLREAWARVTER---KRPAVFAGNQLYVTVMLDIATRLVATDMMLNSGREDAARQSLIGIRDGLYDLRKSAGVVVLADCVRDANELMDQLMLYNDRALDW-DKGKTAPDIAAKAARYGETLKRCDGIAGDTVR 495
            DLS+FN A+E  +AHNRVA  YLRTGN DLA++E+D +R AW+++T+R   K P  FA N LY  ++ + A ++  T  +++SG    A +  I  R+ L  +R+++G+ +LADCV DAN+ MD   +Y      W DKG  A D+ +KAA YG  L RCD +A   V+
Sbjct:   26 DLSNFNEAIEKVAAHNRVATNYLRTGNADLAAIELDDMRGAWSKLTKRFEGKTPDAFADNALYSDLLQNTAGKIDKTLGLIDSGDLPGAAKETIDFREKLSAMRRASGLYLLADCVLDANKAMDDFFVYKTNLPQWGDKGVKA-DVQSKAAIYGYLLHRCDAMATPAVK 193          
BLAST of mRNA_P-wetherbeei_contig54897.1.1 vs. uniprot
Match: A0A327JSC4_9HYPH (Uncharacterized protein n=1 Tax=Rhodobium orientis TaxID=34017 RepID=A0A327JSC4_9HYPH)

HSP 1 Score: 105 bits (261), Expect = 8.850e-25
Identity = 58/161 (36.02%), Postives = 85/161 (52.80%), Query Frame = 1
Query:   22 AVEAASAHNRVAIGYLRTGNTDLASLEVDRLREAWARVTER---KRPAVFAGNQLYVTVMLDIATRLVATDMMLNSGREDAARQSLIGIRDGLYDLRKSAGVVVLADCVRDANELMDQLMLYNDRALDWDKGKTAPDIAAKAARYGETLKRCDGIAGDTVR 495
            A++ A AH R A+ YLRTGNTDLA++E++ + + W  V        P  F GN LY  VM      L     ++++G+ +AAR  L+ +R  +   R  + +  L DC+ +A+  MD L  Y  +    D      D   KAA YG TL+RCD +A D V+
Sbjct:   30 AIDGAFAHYREAVSYLRTGNTDLAAIELESMGDGWKSVAAEYGTTPPDGFDGNALYDRVMSQTGPTLDEALALIDAGKAEAARDLLVPLRGEMVQFRAESRIYTLTDCLFEASTAMDGLFAYKGKPPAHDDWTARADAVGKAAVYGATLERCDALAIDDVK 190          
BLAST of mRNA_P-wetherbeei_contig54897.1.1 vs. uniprot
Match: A0A2N6B8J8_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2N6B8J8_9HYPH)

HSP 1 Score: 99.0 bits (245), Expect = 2.150e-22
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    1 DLSDFNAAVEAASAHNRVAIGYLRTGNTDLASLEVDRLREAWARVTERKR---PAVFAGNQLYVTVMLDIATRLVATDMMLNSGREDAARQSLIGIRDGLYDLRKSAGVVVLADCVRDANELMDQLMLYNDRALDWDKGKTAPDIAAKAARYGETLKRCDGIAGDTVR 495
            +  DF   +EAA A  R A  YLRTGN DLA+L+++ + E W+ + ER     P  F  N L+ + + D  T + A    +++    AA ++L  I   +  +R+++G   + DC+ DA + MD L ++     D      A D+ AK A Y   LK+CD +A   +R
Sbjct:   25 ETGDFLDGIEAAFASYREAASYLRTGNVDLAALQLEDMAETWSALRERFEKTPPESFVDNPLFASTIADTGTAIKAALNAIDTDDAKAAAKALAPIPTSIGGMRRASGFYRMGDCIADAGKAMDALFVHKTTPPDLTDRTVAADVIAKGAVYAYVLKKCDAMAPQAMR 192          
BLAST of mRNA_P-wetherbeei_contig54897.1.1 vs. uniprot
Match: A0A833LMP3_9HYPH (Uncharacterized protein n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833LMP3_9HYPH)

HSP 1 Score: 69.7 bits (169), Expect = 2.130e-11
Identity = 44/151 (29.14%), Postives = 71/151 (47.02%), Query Frame = 1
Query:   43 HNRVAIGYLRTGNTDLASLEVDRLREAWARVTERKRPAVFAGNQLYVTVMLDIATRLVATDMMLNSGREDAARQSLIGIRDGLYDLRKSAGVVVLADCVRDANELMDQLMLYNDRALDWDKGKTAPDIAAKAARYGETLKRCDGIAGDTVR 495
            + R  + YLRT N+DLA +E++RL   W    ER R A+     L   V  + A  + A  +    G   AAR  +  +   +   R+  G+  L+DC+ +A E+ ++L ++   A D  +      IAA+A       +RC+  A  T R
Sbjct:   33 YRRTVLAYLRTENSDLALIEIERLETTWTADLERARAAIGQDRSLAEAVT-ETARAIHAARVAGERGDFAAARSLIEAVNRPIGQWRRRQGIRSLSDCIDEAGEVYERLDVHRTSAPDLMREDIRTGIAAQAEAAARAFRRCNEEADATTR 182          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54897.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A371BDD9_9HYPH8.920e-6562.50Uncharacterized protein n=1 Tax=Pseudolabrys sp. G... [more]
UPI0010BF5BDF4.020e-6362.50hypothetical protein n=1 Tax=Pseudolabrys sp. FHR4... [more]
A0A0Q7TKQ5_9HYPH6.560e-6261.90Uncharacterized protein n=1 Tax=Pseudolabrys sp. R... [more]
A0A345ZTT3_9HYPH1.240e-5558.86Uncharacterized protein n=2 Tax=Pseudolabrys taiwa... [more]
A0A1Q4DP52_9HYPH4.900e-4955.09Uncharacterized protein n=1 Tax=Rhizobiales bacter... [more]
A0A537KZF7_9PROT2.200e-4149.70Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A1Q3W2Z8_9BRAD7.720e-3743.79Uncharacterized protein n=1 Tax=Afipia sp. 64-13 T... [more]
A0A327JSC4_9HYPH8.850e-2536.02Uncharacterized protein n=1 Tax=Rhodobium orientis... [more]
A0A2N6B8J8_9HYPH2.150e-2232.74Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A833LMP3_9HYPH2.130e-1129.14Uncharacterized protein n=1 Tax=Pseudorhodoplanes ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54897contigP-wetherbeei_contig54897:27..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog288000.BBta_3669
Model size501
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.39e-16
EggNOG OGs2EKHB@1|root,33E7C@2|Bacteria,1QWW5@1224|Proteobacteria,2U4YX@28211|Alphaproteobacteria,3JWFI@41294|Bradyrhizobiaceae
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186818.8428814-CDS-P-wetherbeei_contig54897:26..5271683186818.8428814-CDS-P-wetherbeei_contig54897:26..527Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54897 27..527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54897.1.1prot_P-wetherbeei_contig54897.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54897 27..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54897.1.1

>prot_P-wetherbeei_contig54897.1.1 ID=prot_P-wetherbeei_contig54897.1.1|Name=mRNA_P-wetherbeei_contig54897.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
DLSDFNAAVEAASAHNRVAIGYLRTGNTDLASLEVDRLREAWARVTERKR
PAVFAGNQLYVTVMLDIATRLVATDMMLNSGREDAARQSLIGIRDGLYDL
RKSAGVVVLADCVRDANELMDQLMLYNDRALDWDKGKTAPDIAAKAARYG
ETLKRCDGIAGDTVRK*
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mRNA from alignment at P-wetherbeei_contig54897:27..527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54897.1.1 ID=mRNA_P-wetherbeei_contig54897.1.1|Name=mRNA_P-wetherbeei_contig54897.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig54897:27..527- (Phaeothamnion wetherbeei SAG_119_79)
GACCTGTCGGACTTCAACGCCGCGGTCGAGGCCGCCTCAGCCCATAACCG GGTCGCCATCGGCTACCTGCGCACCGGCAATACCGACCTCGCCTCGCTCG AGGTCGACCGCCTGCGCGAGGCCTGGGCGCGCGTCACCGAACGCAAGCGC CCGGCCGTGTTCGCCGGCAATCAGCTCTATGTCACGGTCATGCTCGACAT CGCGACGCGGCTGGTCGCCACCGACATGATGCTCAATTCCGGGCGCGAGG ACGCCGCCCGCCAGTCGCTCATCGGCATCCGCGACGGTCTCTACGACCTG CGCAAGTCGGCCGGCGTCGTCGTGCTCGCCGACTGCGTGCGCGACGCCAA CGAGCTGATGGACCAGTTGATGCTCTACAACGACCGCGCGCTCGACTGGG ACAAAGGCAAAACCGCGCCCGATATTGCCGCCAAGGCGGCGCGCTACGGC GAAACCCTGAAGCGCTGCGACGGCATCGCCGGCGACACTGTGCGCAAGTA G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54897:27..527-

>mRNA_P-wetherbeei_contig54897.1.1 ID=mRNA_P-wetherbeei_contig54897.1.1|Name=mRNA_P-wetherbeei_contig54897.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig54897:27..527- (Phaeothamnion wetherbeei SAG_119_79)
GACCTGTCGGACTTCAACGCCGCGGTCGAGGCCGCCTCAGCCCATAACCG
GGTCGCCATCGGCTACCTGCGCACCGGCAATACCGACCTCGCCTCGCTCG
AGGTCGACCGCCTGCGCGAGGCCTGGGCGCGCGTCACCGAACGCAAGCGC
CCGGCCGTGTTCGCCGGCAATCAGCTCTATGTCACGGTCATGCTCGACAT
CGCGACGCGGCTGGTCGCCACCGACATGATGCTCAATTCCGGGCGCGAGG
ACGCCGCCCGCCAGTCGCTCATCGGCATCCGCGACGGTCTCTACGACCTG
CGCAAGTCGGCCGGCGTCGTCGTGCTCGCCGACTGCGTGCGCGACGCCAA
CGAGCTGATGGACCAGTTGATGCTCTACAACGACCGCGCGCTCGACTGGG
ACAAAGGCAAAACCGCGCCCGATATTGCCGCCAAGGCGGCGCGCTACGGC
GAAACCCTGAAGCGCTGCGACGGCATCGCCGGCGACACTGTGCGCAAGTA
G
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