mRNA_P-wetherbeei_contig5488.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5488.1.1
Unique NamemRNA_P-wetherbeei_contig5488.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5488.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5488contigP-wetherbeei_contig5488:70..1013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size945
Hectar predicted targeting categoryother localisation
Exons1
Cds size846
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186818.7438128-CDS-P-wetherbeei_contig5488:69..9151683186818.7438128-CDS-P-wetherbeei_contig5488:69..915Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5488 70..915 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186818.754022-UTR-P-wetherbeei_contig5488:915..10131683186818.754022-UTR-P-wetherbeei_contig5488:915..1013Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5488 916..1013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5488.1.1prot_P-wetherbeei_contig5488.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5488 70..915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5488.1.1

>prot_P-wetherbeei_contig5488.1.1 ID=prot_P-wetherbeei_contig5488.1.1|Name=mRNA_P-wetherbeei_contig5488.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=282bp
IDRRGSGGDGDDGGAGTEGGGGHGGGDDGPSARRRRRALSPQRYQEVILT
HLAALPGSDVDMEVRRNIALLGRRLNDDSALVSRMQAALEEANVALRHAA
AGCGTALDCNGNDGDGEGDADTDADLDDGGNSRVRDADGSRGGDGGSGGC
GSTGDAGAATAATMAAAAAAARIAAVMEVAEETLQQLRAQEHTSGFMRSY
LALCGGVTVVLQRALAVLRAIVAAGGIAGGDVDGGGGGGGSGGGEEAKAW
GSEWGALRTAFVELFTDTRKLIRRHSAPDGV*
back to top

mRNA from alignment at P-wetherbeei_contig5488:70..1013+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5488.1.1 ID=mRNA_P-wetherbeei_contig5488.1.1|Name=mRNA_P-wetherbeei_contig5488.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=944bp|location=Sequence derived from alignment at P-wetherbeei_contig5488:70..1013+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGACCGCCGGGGCAGCGGGGGCGACGGCGACGATGGCGGCGCCGGCAC
CGAGGGCGGCGGTGGACACGGCGGCGGCGACGATGGGCCGTCGGCGAGGC
GCCGACGGCGGGCGCTGTCGCCGCAGCGATACCAGGAGGTGATCCTGACG
CACCTGGCAGCGCTACCGGGGAGCGACGTCGACATGGAAGTTCGCCGCAA
CATAGCGCTGCTCGGGCGTCGTCTCAATGACGACTCGGCGCTCGTCTCGC
GCATGCAGGCGGCGCTCGAGGAGGCCAATGTTGCGCTGCGCCACGCTGCT
GCTGGCTGCGGCACGGCGCTCGACTGCAACGGCAACGATGGCGACGGCGA
AGGTGACGCCGACACTGATGCCGATCTTGACGATGGTGGAAATTCCCGAG
TCCGCGACGCTGACGGGAGCCGTGGCGGCGACGGTGGTAGCGGTGGCTGC
GGCAGCACCGGTGACGCGGGAGCTGCGACCGCGGCTACGATGGCGGCGGC
TGCTGCTGCTGCGCGAATCGCGGCGGTTATGGAAGTGGCGGAGGAGACGT
TGCAGCAGCTGCGGGCGCAGGAGCACACGAGTGGCTTCATGCGGTCGTAC
CTCGCGCTCTGCGGCGGTGTCACAGTGGTGCTGCAGCGGGCCCTGGCGGT
GCTGCGCGCCATCGTGGCCGCCGGCGGCATTGCCGGGGGCGACGTTGATG
GCGGCGGCGGTGGCGGCGGAAGCGGCGGTGGCGAAGAGGCGAAGGCGTGG
GGCAGCGAGTGGGGTGCGCTGCGGACGGCATTCGTGGAGCTCTTCACGGA
CACGCGCAAGCTTATTCGCCGCCACAGCGCGCCCGACGGCGTCTGAGATG
TGGCGGCGAGAGGAGAACGCGATACCGGTCGTCTCGGCCGCCGCCATTCC
GTCGCACGATCGTCGCCGGACAAACACATCCACATTGCTACGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5488:70..1013+

>mRNA_P-wetherbeei_contig5488.1.1 ID=mRNA_P-wetherbeei_contig5488.1.1|Name=mRNA_P-wetherbeei_contig5488.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig5488:70..1013+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGACCGCCGGGGCAGCGGGGGCGACGGCGACGATGGCGGCGCCGGCAC
CGAGGGCGGCGGTGGACACGGCGGCGGCGACGATGGGCCGTCGGCGAGGC
GCCGACGGCGGGCGCTGTCGCCGCAGCGATACCAGGAGGTGATCCTGACG
CACCTGGCAGCGCTACCGGGGAGCGACGTCGACATGGAAGTTCGCCGCAA
CATAGCGCTGCTCGGGCGTCGTCTCAATGACGACTCGGCGCTCGTCTCGC
GCATGCAGGCGGCGCTCGAGGAGGCCAATGTTGCGCTGCGCCACGCTGCT
GCTGGCTGCGGCACGGCGCTCGACTGCAACGGCAACGATGGCGACGGCGA
AGGTGACGCCGACACTGATGCCGATCTTGACGATGGTGGAAATTCCCGAG
TCCGCGACGCTGACGGGAGCCGTGGCGGCGACGGTGGTAGCGGTGGCTGC
GGCAGCACCGGTGACGCGGGAGCTGCGACCGCGGCTACGATGGCGGCGGC
TGCTGCTGCTGCGCGAATCGCGGCGGTTATGGAAGTGGCGGAGGAGACGT
TGCAGCAGCTGCGGGCGCAGGAGCACACGAGTGGCTTCATGCGGTCGTAC
CTCGCGCTCTGCGGCGGTGTCACAGTGGTGCTGCAGCGGGCCCTGGCGGT
GCTGCGCGCCATCGTGGCCGCCGGCGGCATTGCCGGGGGCGACGTTGATG
GCGGCGGCGGTGGCGGCGGAAGCGGCGGTGGCGAAGAGGCGAAGGCGTGG
GGCAGCGAGTGGGGTGCGCTGCGGACGGCATTCGTGGAGCTCTTCACGGA
CACGCGCAAGCTTATTCGCCGCCACAGCGCGCCCGACGGCGTCTGA
back to top