mRNA_P-wetherbeei_contig54862.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54862.1.1
Unique NamemRNA_P-wetherbeei_contig54862.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54862.1.1 vs. uniprot
Match: A0A1L9P1K4_9RHOB (D-inositol-3-phosphate glycosyltransferase n=2 Tax=Planktotalea frisia TaxID=696762 RepID=A0A1L9P1K4_9RHOB)

HSP 1 Score: 53.1 bits (126), Expect = 1.120e-6
Identity = 31/63 (49.21%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:    7 RVVMAVNNPASNDYRVVKSAEVLADAGYEVIVVGL--AGAGYPAQETRNGVRYVRVSLPKSRL 189
            RV M V NP   DYRVVK A+ LA AGY+V V     AG+  P  ET NGV Y R+    S +
Sbjct:  140 RVAMVVPNPCDPDYRVVKQAQTLATAGYQVKVYCTLPAGSNLPVSETINGVEYERIPFSPSAM 202
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BLAST of mRNA_P-wetherbeei_contig54862.1.1 vs. uniprot
Match: A0A1L9NRS2_9RHOB (Uncharacterized protein n=1 Tax=Planktotalea frisia TaxID=696762 RepID=A0A1L9NRS2_9RHOB)

HSP 1 Score: 49.3 bits (116), Expect = 4.660e-6
Identity = 30/58 (51.72%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:    4 TRVVMAVNNPASNDYRVVKSAEVLADAGYEVIVVGLA--GAGYPAQETRNGVRYVRVS 171
            T++ + V NP   DYRVVK AE LA AGYEV V      G+  P  E  NGV YVR S
Sbjct:    4 TKIAVVVPNPCDPDYRVVKQAETLAQAGYEVRVFCTKPRGSDLPDLEIINGVEYVRRS 61
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BLAST of mRNA_P-wetherbeei_contig54862.1.1 vs. uniprot
Match: A0A1F8LC77_9CHLR (Glyco_trans_4-like_N domain-containing protein n=1 Tax=Chloroflexi bacterium GWC2_73_18 TaxID=1797616 RepID=A0A1F8LC77_9CHLR)

HSP 1 Score: 48.5 bits (114), Expect = 8.230e-5
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   10 VVMAVNNPASNDYRVVKSAEVLADAGYEVIVVGLAGAGYPAQETRNGVRYVRV 168
            VV  V NPA++D RV++ AE LA AGY+V +V L   G P +E R  VR +R+
Sbjct:   11 VVAFVYNPATHDTRVLREAETLAGAGYDVTLVALWRPGLPREERRGAVRVLRL 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54862.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1L9P1K4_9RHOB1.120e-649.21D-inositol-3-phosphate glycosyltransferase n=2 Tax... [more]
A0A1L9NRS2_9RHOB4.660e-651.72Uncharacterized protein n=1 Tax=Planktotalea frisi... [more]
A0A1F8LC77_9CHLR8.230e-549.06Glyco_trans_4-like_N domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54862contigP-wetherbeei_contig54862:229..438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1122138.AQUZ01000042_gene3392
PFAMsGlyco_trans_1_2,Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
Model size210
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000124
EggNOG OGsCOG0297@1|root,COG0438@1|root,COG0297@2|Bacteria,COG0438@2|Bacteria,2I90T@201174|Actinobacteria,4DWIJ@85009|Propionibacteriales
DescriptionGlycosyl transferases group 1
Cds size210
COG categoryGM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186818.560655-CDS-P-wetherbeei_contig54862:228..4381683186818.560655-CDS-P-wetherbeei_contig54862:228..438Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54862 229..438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54862.1.1prot_P-wetherbeei_contig54862.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54862 229..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54862.1.1

>prot_P-wetherbeei_contig54862.1.1 ID=prot_P-wetherbeei_contig54862.1.1|Name=mRNA_P-wetherbeei_contig54862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
MTRVVMAVNNPASNDYRVVKSAEVLADAGYEVIVVGLAGAGYPAQETRNG
VRYVRVSLPKSRLALLPDLL
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mRNA from alignment at P-wetherbeei_contig54862:229..438-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54862.1.1 ID=mRNA_P-wetherbeei_contig54862.1.1|Name=mRNA_P-wetherbeei_contig54862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig54862:229..438- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCGCGTGGTGATGGCGGTGAATAACCCCGCCAGCAATGACTATCG
CGTGGTGAAAAGTGCCGAGGTGTTGGCAGATGCCGGTTACGAAGTGATCG
TGGTCGGCCTCGCGGGCGCCGGCTACCCGGCACAGGAAACCCGTAACGGC
GTGCGCTATGTGCGCGTCAGTCTGCCGAAAAGTCGCCTCGCGCTGTTGCC
GGACCTGCTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54862:229..438-

>mRNA_P-wetherbeei_contig54862.1.1 ID=mRNA_P-wetherbeei_contig54862.1.1|Name=mRNA_P-wetherbeei_contig54862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig54862:229..438- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCGCGTGGTGATGGCGGTGAATAACCCCGCCAGCAATGACTATCG
CGTGGTGAAAAGTGCCGAGGTGTTGGCAGATGCCGGTTACGAAGTGATCG
TGGTCGGCCTCGCGGGCGCCGGCTACCCGGCACAGGAAACCCGTAACGGC
GTGCGCTATGTGCGCGTCAGTCTGCCGAAAAGTCGCCTCGCGCTGTTGCC
GGACCTGCTA
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