mRNA_P-wetherbeei_contig54839.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54839.1.1
Unique NamemRNA_P-wetherbeei_contig54839.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: A0A853G6K4_9BURK (MarR family transcriptional regulator n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A853G6K4_9BURK)

HSP 1 Score: 140 bits (353), Expect = 6.330e-40
Identity = 69/133 (51.88%), Postives = 94/133 (70.68%), Query Frame = 1
Query:    1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPEDMAWVTTHPFDLSNES 399
            AD+VL + GLGR HHR+LHFA R PGI+V  L+ +L ISNQA+SR+T+QL S GLLEQRYS EDRRVR +++T  G A L+ LT +QL +I  +  +L+A ++ G W+ L  M+RP D  WVT    ++ + S
Sbjct:   34 ADEVLAKLGLGRTHHRILHFAARKPGISVNELLEILSISNQAMSRSTSQLMSKGLLEQRYSAEDRRVRQHYVTAQGAAFLEDLTRQQLEVIRRSHQQLSAQQVHGFWDVLDTMIRPNDRKWVTAQIQEIPDTS 166          
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: A0A368XN59_9BURK (DNA-binding MarR family transcriptional regulator n=1 Tax=Pseudorhodoferax soli TaxID=545864 RepID=A0A368XN59_9BURK)

HSP 1 Score: 140 bits (353), Expect = 1.350e-39
Identity = 68/126 (53.97%), Postives = 90/126 (71.43%), Query Frame = 1
Query:    1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPEDMAWVTTHP 378
            +D++L EHGLGRPHHRVL+FA  +PGITVG L +LLRISNQALSRT  Q+ ++GL+EQ Y  +DRRVR + +T  G ALL    E+Q A+I  A      A+IE  W  L+++ RPED+ W++ HP
Sbjct:   53 SDRILAEHGLGRPHHRVLYFAQLSPGITVGELTTLLRISNQALSRTMQQIATLGLIEQCYCPDDRRVRRHFVTEQGAALLARSKEKQFAVIRKAHLACPQADIEAFWRTLTLLSRPEDLVWISRHP 178          
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: A0A418V1K9_RHOPL (MarR family transcriptional regulator n=1 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=A0A418V1K9_RHOPL)

HSP 1 Score: 113 bits (283), Expect = 2.610e-29
Identity = 62/124 (50.00%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPEDMAWVTT 372
            A+QVL  H LGR HHRVL+F  + PGITV  L+S+LRI+NQALSRT NQL  M L+EQ+   +DRR R N  TP G AL + LT  Q   I  + + +   +++  W+ L  MVR +D AW+TT
Sbjct:   43 ANQVLALHKLGRAHHRVLYFVVQQPGITVNELISILRITNQALSRTINQLAQMQLIEQKPGQQDRRHRCNFPTPKGIALCRQLTRLQYQHIDRSLAGVPREDLKVFWDVLLRMVREKDRAWITT 166          
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: UPI001B3B9EE0 (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI001B3B9EE0)

HSP 1 Score: 108 bits (270), Expect = 3.720e-27
Identity = 54/118 (45.76%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPED 354
            AD +L ++G GRPHHRVL+F  R PGITV  ++++LR++NQALSR  NQL    L+EQR+ + DRR R ++LTP G AL   L + Q   +  A   L    + G W  L+ M+  ED
Sbjct:   46 ADAILADYGFGRPHHRVLYFVARRPGITVNEILAILRVTNQALSRVMNQLIEAELIEQRHDSADRRRRQHYLTPKGAALDHQLCQEQFRRVRRAYQSLPRDAVLGFWATLNAMIAEED 163          
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: UPI001748331F (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Camelimonas fluminis TaxID=1576911 RepID=UPI001748331F)

HSP 1 Score: 107 bits (267), Expect = 5.900e-27
Identity = 56/123 (45.53%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPEDMAWVT 369
            ADQVL ++ LGRPHHRVL+F  + PGITV  L+S LRI+NQA SRT NQL  M L+EQR    DRR R ++ T +G  L + L++ Q   +      +   ++   W+ L  +VR +D AW+T
Sbjct:   40 ADQVLADYKLGRPHHRVLYFVVQRPGITVNELLSTLRITNQAFSRTINQLVQMNLVEQRMGNGDRRYRCHYPTKEGVELSQRLSQLQYEHVSECLKDVPMGDLGLFWDVLLRLVREQDRAWIT 162          
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: A0A318SSL0_9RHOB (MarR family transcriptional regulator n=1 Tax=Pseudoroseicyclus aestuarii TaxID=1795041 RepID=A0A318SSL0_9RHOB)

HSP 1 Score: 100 bits (249), Expect = 3.110e-24
Identity = 52/116 (44.83%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    4 DQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPE 351
            D++L E GLGR HHR +HF  R+PG TVG+L++LL ++ Q+L+R    L   GL+ QR  T DRR R  HLTP+G+AL + L++ Q   + AA  R   A + G    L  M+ PE
Sbjct:   38 DRILEERGLGRAHHRAIHFIHRSPGATVGTLLTLLGVTKQSLNRVLRTLVEEGLVVQRIGTSDRRERRLHLTPEGEALERALSDAQRERLRAAYRRAGPAAVAGFREVLEAMMDPE 153          
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: A0A2E2E2L9_9PROT (MarR family transcriptional regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E2E2L9_9PROT)

HSP 1 Score: 97.4 bits (241), Expect = 7.420e-23
Identity = 49/126 (38.89%), Postives = 68/126 (53.97%), Query Frame = 1
Query:    1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPEDMAWVTTHP 378
            AD+ + E   GR HHR+L+F  + PGITVG ++S+LR+S+Q + R  + +   G +EQ+ S  DRR R  + T  G  L   LTERQ   I  A        + G W  L  M+ P D +WV   P
Sbjct:   57 ADRQMAEMSFGRTHHRILYFVKQKPGITVGEMLSVLRVSHQNIQRALSGMIRQGFIEQKTSMHDRRQRQLYATESGTVLFNQLTERQFQRISRAYRAAGPEAVNGFWKVLWHMIEPSDQSWVIRKP 182          
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: S9QU07_9RHOB (Transcriptional regulator n=2 Tax=Rubellimicrobium TaxID=295418 RepID=S9QU07_9RHOB)

HSP 1 Score: 96.7 bits (239), Expect = 1.370e-22
Identity = 51/116 (43.97%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    4 DQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPE 351
            D++L E G+GR HHR LHF GR PG TVG L++LL ++ Q+L+R   +LT  GL+E R   EDRR R  HLT  G+AL + L++ Q   + AA        ++G    L  M+ PE
Sbjct:   48 DRILAERGMGRAHHRALHFIGRAPGTTVGRLLTLLGVTKQSLNRVLRRLTEDGLVEVRVGREDRRERHLHLTESGRALERALSDAQRERMRAAYRAAGPQAVQGFRQVLEAMMDPE 163          
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: UPI0014854243 (MarR family transcriptional regulator n=1 Tax=Rhodoligotrophos defluvii TaxID=2561934 RepID=UPI0014854243)

HSP 1 Score: 96.7 bits (239), Expect = 1.710e-22
Identity = 50/122 (40.98%), Postives = 72/122 (59.02%), Query Frame = 1
Query:    1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPEDMAWV 366
            A++ L    +GR HHR+L+F  +TPGITVG L SLLR+++QA+ R    L   G ++Q+ S+ DRR R    TP G AL + L++RQ   +  A  +  +  + G W  LS MV P D  W+
Sbjct:   49 ANRQLAALDMGRTHHRILYFTVQTPGITVGELTSLLRVTHQAIQRPMGDLVRGGYIQQQMSSVDRRQRQLFSTPKGLALFEQLSQRQFERLARAYEKAGSEAVMGFWAVLSAMVEPADHEWI 170          
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Match: A0A7D5RUY0_9PROT (Winged helix-turn-helix transcriptional regulator n=1 Tax=Defluviicoccus sp. TaxID=2682137 RepID=A0A7D5RUY0_9PROT)

HSP 1 Score: 95.5 bits (236), Expect = 7.140e-22
Identity = 54/118 (45.76%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    1 ADQVLMEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGLLEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEGMWNGLSVMVRPED 354
            AD +L+ +G GR HHRV+ F GR PG+TVG L+++L+I+ Q+L+R   QL   G + QR    DRR R  +LT   +AL + LTERQ A I  A S       EG    L  MV PED
Sbjct:   81 ADTLLVRYGFGRAHHRVIWFIGREPGMTVGELLAILKITKQSLARVLGQLMDGGFVVQRICPGDRRRRKLYLTRGXEALARTLTERQAARIAQAWSATGKDAAEGFRAVLRAMVNPED 198          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54839.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A853G6K4_9BURK6.330e-4051.88MarR family transcriptional regulator n=1 Tax=Alca... [more]
A0A368XN59_9BURK1.350e-3953.97DNA-binding MarR family transcriptional regulator ... [more]
A0A418V1K9_RHOPL2.610e-2950.00MarR family transcriptional regulator n=1 Tax=Rhod... [more]
UPI001B3B9EE03.720e-2745.76MarR family winged helix-turn-helix transcriptiona... [more]
UPI001748331F5.900e-2745.53MarR family winged helix-turn-helix transcriptiona... [more]
A0A318SSL0_9RHOB3.110e-2444.83MarR family transcriptional regulator n=1 Tax=Pseu... [more]
A0A2E2E2L9_9PROT7.420e-2338.89MarR family transcriptional regulator n=1 Tax=Rhod... [more]
S9QU07_9RHOB1.370e-2243.97Transcriptional regulator n=2 Tax=Rubellimicrobium... [more]
UPI00148542431.710e-2240.98MarR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A7D5RUY0_9PROT7.140e-2245.76Winged helix-turn-helix transcriptional regulator ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54839contigP-wetherbeei_contig54839:2..403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1528106.JRJE01000008_gene1578
Preferred namepetP
PFAMsMarR_2
Model size402
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.7e-22
EggNOG OGsCOG1846@1|root,COG1846@2|Bacteria,1RIX7@1224|Proteobacteria,2U94M@28211|Alphaproteobacteria,2JS8Q@204441|Rhodospirillales
Descriptiontranscriptional
Cds size387
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186818.4381194-UTR-P-wetherbeei_contig54839:1..161683186818.4381194-UTR-P-wetherbeei_contig54839:1..16Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54839 2..16 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186818.4487178-CDS-P-wetherbeei_contig54839:16..4031683186818.4487178-CDS-P-wetherbeei_contig54839:16..403Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54839 17..403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54839.1.1prot_P-wetherbeei_contig54839.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54839 17..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54839.1.1

>prot_P-wetherbeei_contig54839.1.1 ID=prot_P-wetherbeei_contig54839.1.1|Name=mRNA_P-wetherbeei_contig54839.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MEHGLGRPHHRVLHFAGRTPGITVGSLMSLLRISNQALSRTTNQLTSMGL
LEQRYSTEDRRVRLNHLTPDGQALLKLLTERQLALIGAAQSRLTAAEIEG
MWNGLSVMVRPEDMAWVTTHPFDLSNES*
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mRNA from alignment at P-wetherbeei_contig54839:2..403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54839.1.1 ID=mRNA_P-wetherbeei_contig54839.1.1|Name=mRNA_P-wetherbeei_contig54839.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig54839:2..403+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGACCAGGTGCTGATGGAGCACGGCCTGGGTCGGCCGCACCACCGCGT GCTGCACTTCGCGGGGCGCACGCCCGGCATCACGGTGGGCTCGCTGATGT CGCTGCTGCGCATCAGCAACCAGGCCCTGTCGCGCACCACCAACCAGCTC ACGAGCATGGGCCTGCTCGAGCAGCGCTACAGCACGGAGGACCGCCGCGT ACGCCTGAACCACCTGACGCCCGACGGACAGGCCCTGTTGAAGTTGCTGA CAGAAAGGCAACTGGCGCTGATCGGAGCCGCGCAGTCGCGCCTCACGGCG GCTGAAATCGAAGGCATGTGGAACGGGCTCTCGGTCATGGTGCGCCCGGA AGACATGGCCTGGGTGACCACGCATCCCTTCGACCTCTCGAACGAATCCT GA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54839:2..403+

>mRNA_P-wetherbeei_contig54839.1.1 ID=mRNA_P-wetherbeei_contig54839.1.1|Name=mRNA_P-wetherbeei_contig54839.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig54839:2..403+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCACGGCCTGGGTCGGCCGCACCACCGCGTGCTGCACTTCGCGGG
GCGCACGCCCGGCATCACGGTGGGCTCGCTGATGTCGCTGCTGCGCATCA
GCAACCAGGCCCTGTCGCGCACCACCAACCAGCTCACGAGCATGGGCCTG
CTCGAGCAGCGCTACAGCACGGAGGACCGCCGCGTACGCCTGAACCACCT
GACGCCCGACGGACAGGCCCTGTTGAAGTTGCTGACAGAAAGGCAACTGG
CGCTGATCGGAGCCGCGCAGTCGCGCCTCACGGCGGCTGAAATCGAAGGC
ATGTGGAACGGGCTCTCGGTCATGGTGCGCCCGGAAGACATGGCCTGGGT
GACCACGCATCCCTTCGACCTCTCGAACGAATCCTGA
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