mRNA_P-wetherbeei_contig54814.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54814.1.1
Unique NamemRNA_P-wetherbeei_contig54814.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54814.1.1 vs. uniprot
Match: UPI0004A7305E (EAL domain-containing protein n=1 Tax=Nevskia soli TaxID=418856 RepID=UPI0004A7305E)

HSP 1 Score: 152 bits (384), Expect = 7.220e-40
Identity = 88/166 (53.01%), Postives = 111/166 (66.87%), Query Frame = 1
Query:   16 PERPLLLLDPPLSLDTLLAARAAGADDCVGCDSPAQLRHLEQVVLRELASQDCRRQLRQARSRLADFEARHEKLTDSTGDAVACIQEGIVVRANAALAERLGVDDPAALTGQPLIDLVAASQQADIKARLRAVLKGAASSEPLQLQLAGRHGVVTVEAQMILGQQD 513
            P+ P++++    S++  +AA AAGA D V      QLRHLE VV+RE       R LR  + RLADFE+RH++LT+ T DAVA +QEGI+  AN A    +G D+PA L GQPLIDLVA  QQ+ IK RLRAV KG  + EPL+L L GR G V V+AQ+ILG QD
Sbjct:   86 PDLPVVVISNDHSVEDAVAALAAGAQDFVSYSDLRQLRHLELVVVREFVKHHHMRNLRLTQQRLADFESRHQQLTEGTADAVAHVQEGILANANLAFTHLIGYDEPAELAGQPLIDLVAPDQQSKIKERLRAVQKGKHNGEPLELVLVGRKGQVHVKAQLILGTQD 251          
BLAST of mRNA_P-wetherbeei_contig54814.1.1 vs. uniprot
Match: A0A3N0VDJ8_9GAMM (EAL domain-containing protein n=1 Tax=Stagnimonas aquatica TaxID=2689987 RepID=A0A3N0VDJ8_9GAMM)

HSP 1 Score: 121 bits (303), Expect = 9.820e-29
Identity = 72/166 (43.37%), Postives = 99/166 (59.64%), Query Frame = 1
Query:   16 PERPLLLLDPPLSLDTLLAARAAGADDCVGCDSPAQLRHLEQVVLRELASQDCRRQLRQARSRLADFEARHEKLTDSTGDAVACIQEGIVVRANAALAERLGVDDPAALTGQPLIDLVAASQQADIKARLRAVLKGAASSEPLQLQLAGRHGVVTVEAQMILGQQD 513
            P+ P+L+L        ++ A   GA D +G    AQLR LE VV+RE       R+LR    RL DFE RH +L ++T DAVA +QEGI+  AN + A+ LG ++P AL G+PLID V A Q+  +K RLR VLKG  + EPL+    G+   V V AQ+++  +D
Sbjct:   94 PDLPVLILSREPRPGGVVQALEHGARDLLGYGDAAQLRQLELVVIREFLGHQHLRRLRVMSERLHDFEQRHSQLLETTADAVAHVQEGILAHANPSFAKLLGYENPEALQGEPLIDFVVADQRTRVKERLRLVLKGKHAGEPLEFSFEGKEHPVPVSAQLVVSSED 259          
BLAST of mRNA_P-wetherbeei_contig54814.1.1 vs. uniprot
Match: A0A318EJC1_9GAMM (PAS domain S-box-containing protein n=1 Tax=Sinimarinibacterium flocculans TaxID=985250 RepID=A0A318EJC1_9GAMM)

HSP 1 Score: 119 bits (299), Expect = 3.340e-28
Identity = 74/171 (43.27%), Postives = 102/171 (59.65%), Query Frame = 1
Query:    4 RRLLPERPLLLLDPPLSLDTLLAARAAGADDCVGCDSPAQLRHLEQVVLRELASQDCRRQLRQARSRLADFEARHEKLTDSTGDAVACIQEGIVVRANAALAERLGVDDPAALTGQPLIDLVAASQQADIKARLRAVLKGAASSEPLQLQLAGRHGV-VTVEAQMILGQQD 513
            RRL+P+ P+L+L P ++ +  +AA AAGA D V  +    +RHLE VVLRE+A     R+LR  R RL DFE+RH++L   T DA+A IQEGI+   N A A+ LG +    LT  PL+DLVA   Q  +K  L+  L+G     PL+  L  + G  V++ A + LG  D
Sbjct:   90 RRLMPDLPVLVLSPQITAEDSVAALAAGASDVVSNEDLRHMRHLELVVLREIAKHSQLRELRSTRQRLEDFESRHQQLIAGTNDAIAHIQEGILSEVNPAFAQLLGYERADDLTALPLMDLVADDHQPKVKEHLKLFLRGKNEGRPLECCLLHKDGRRVSIGAHLTLGSAD 260          
BLAST of mRNA_P-wetherbeei_contig54814.1.1 vs. uniprot
Match: A0A521N5C8_9GAMM (EAL domain-containing protein n=1 Tax=Sinobacteraceae bacterium TaxID=1969813 RepID=A0A521N5C8_9GAMM)

HSP 1 Score: 115 bits (289), Expect = 7.630e-27
Identity = 70/166 (42.17%), Postives = 98/166 (59.04%), Query Frame = 1
Query:   16 PERPLLLLDPPLSLDTLLAARAAGADDCVGCDSPAQLRHLEQVVLRELASQDCRRQLRQARSRLADFEARHEKLTDSTGDAVACIQEGIVVRANAALAERLGVDDPAALTGQPLIDLVAASQQADIKARLRAVLKGAASSEPLQLQLAGRHGVVTVEAQMILGQQD 513
            P+ P+L++    S   L++A   GA D +       LR LE VV+RE  +    R+LR    RL DFE RH +L ++T DAVA +QEGI+  AN + A+ LG D+P  L G+PLID V A Q+  +K RLR VLKG  + E L+  L G+   V V AQ+++  +D
Sbjct:   94 PDLPVLIITRSPSPPGLVSALERGAKDLLSYADVGSLRQLELVVIREFLNHQHLRRLRVMSDRLHDFEQRHSQLLETTADAVAHVQEGILSHANPSFAKLLGYDNPETLHGEPLIDFVVADQRTRVKERLRLVLKGKHAGEALEFSLEGKEHPVPVSAQLVVSNED 259          
BLAST of mRNA_P-wetherbeei_contig54814.1.1 vs. uniprot
Match: UPI001CA72F13 (EAL domain-containing protein n=1 Tax=Algiphilus sp. NNCM1 TaxID=2834409 RepID=UPI001CA72F13)

HSP 1 Score: 78.2 bits (191), Expect = 1.060e-13
Identity = 56/168 (33.33%), Postives = 83/168 (49.40%), Query Frame = 1
Query:    4 RRLLPERPLLLLD----PPLSLDTLLAARAAGADDCVGCDSPAQLRHLEQVVLRELASQDCRRQLRQARSRLADFEARHEKLTDSTGDAVACIQEGIVVRANAALAERLGVDDPAALTGQPLIDLVAASQQADIKARLRAVLKGAASSEPLQLQLAGRHGVVTVEAQM 495
            R+L PE P+L L+    P    + L      GA D V  DS A   HL     RE  +      LR+AR RLA++EAR   L   T  A+  + EGIV+ AN A AE LG DD   L  QPL+DL++A  ++ ++  +  + +G  +          ++G + V  ++
Sbjct:   74 RQLSPELPVLALEVEGSPASRAEQLKHIFEQGAVDLVRLDSAADKAHLAAACRREFDASRTGWALREARMRLAEYEARQRTLVAETSRAMLTLSEGIVIEANPAAAELLGFDDNEGLIAQPLLDLISADDRSHVRELVAQLTRGRIAEADFTAGFVTQNGDIAVHTRL 241          
BLAST of mRNA_P-wetherbeei_contig54814.1.1 vs. uniprot
Match: W0E0D5_MARPU (Diguanylate phosphodiesterase n=5 Tax=Marichromatium TaxID=85076 RepID=W0E0D5_MARPU)

HSP 1 Score: 67.4 bits (163), Expect = 5.820e-10
Identity = 53/138 (38.41%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    4 RRLLPERPLLLLDPPLS-LDTLLAARAAGADDCVGCDSPAQLRHLEQVVLRELASQDCRRQLRQARSRLADFEARHEKLTDSTGDAVACIQEGIVVRANAALAERLGVDDPAALTGQPLIDLVAASQQADIKARLRAV 414
            RRL  + PL+++  P S     L AR  GA D V  D P    HL+ V  RELA    RR+ R   +RL   E R  +  + + DA+A +QEG+ + ANAA     G  D  AL G   +DL+ A Q+  ++  LRAV
Sbjct:   76 RRLDSDTPLIVITGPESDAAESLRARRGGARDLVRRDDP---EHLQLVAKRELADLYQRREARALATRLRQCERRAREFIEGSLDAIAFVQEGLHLHANAAYLSLFGYADADALAGATFLDLIPAEQRPRVREFLRAV 210          
BLAST of mRNA_P-wetherbeei_contig54814.1.1 vs. uniprot
Match: A0A0S7Z301_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium SG8_30 TaxID=1703404 RepID=A0A0S7Z301_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 1.970e-9
Identity = 49/151 (32.45%), Postives = 75/151 (49.67%), Query Frame = 1
Query:    7 RLLPERPLLLLDPPLSLDTLLAARAAGADDCVGCDSPAQLRHLEQVVLRELASQDCRRQLRQARSRLADFEARHEKLTDSTGDAVACIQEGIVVRANAALAERLGVDDPAALTGQPLIDLVAASQQADIKARLRAVLKGAASSEPLQLQLA 459
            RL P+ P+L++   +    + AA   GA D V   S   L  + +VV REL +    R L    S + +++ +  +    + DA+A +QEGI+V AN A  E  G + P  + G PL+D   A   A +K  L A L+G  S   L++  A
Sbjct:   68 RLAPDVPVLIVRESIDERAIAAALGLGAQDAV---SLRDLDRVARVVARELTAHRLERALSGTVSSMREYKRQLHEFMQGSTDAIAQVQEGIIVEANPAWLELFGHESPETIVGTPLMDSFDAESHAALKGALVACLRGKWSDHALRVSAA 215          
BLAST of mRNA_P-wetherbeei_contig54814.1.1 vs. uniprot
Match: A0A5Q4EY97_9GAMM (EAL domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A5Q4EY97_9GAMM)

HSP 1 Score: 63.9 bits (154), Expect = 9.360e-9
Identity = 50/160 (31.25%), Postives = 75/160 (46.88%), Query Frame = 1
Query:   16 PERPLLLLDPPLSLDTLLAARAAGADDCVGCDSPAQLRHLEQVVLRELASQDCRRQLRQARSRLADFEARHEKLTDSTGDAVACIQEGIVVRANAALAERLGVDDPAALTGQPLIDLVAASQQADIKARLRAVLKGAASSEPLQLQLAGRHG-VVTVEAQ 492
            P  PLL +   +   T+     AGA D +   S A  R L+ V  REL +    R L   +   + +  + +   + + DA+A +QEGIVV  N A  E  G  D  A+ GQPL+DL  +     +K  L A ++G    + L+ Q     G  +T+E Q
Sbjct:  163 PGLPLLCIRQSVDESTIARDLDAGAQDTL---SLAHTRRLQAVASRELRAYRLERALNNTQRSASRYRQQLQAFMEGSADAIATVQEGIVVEVNPAWLELFGYADEEAVVGQPLMDLFESGSHTALKGALVAAMQGKWEDQSLRAQALTSDGSALTIELQ 319          
BLAST of mRNA_P-wetherbeei_contig54814.1.1 vs. uniprot
Match: UPI0008266E4A (EAL domain-containing protein n=3 Tax=Endozoicomonas TaxID=305899 RepID=UPI0008266E4A)

HSP 1 Score: 63.5 bits (153), Expect = 1.240e-8
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   79 AAGADDCVGCDSPAQLRHLEQVVLRELASQDCRRQLRQARSRLADFEARHEKLTDSTGDAVACIQEGIVVRANAALAERLGVDDPAALTGQPLIDLVAASQQADIKARLR 408
            +AGA D +   +   + H    VLREL S + RR L  AR  L +   R + L  +  +A+A I +G+ V ANAA  +  G D+   L G PLID++AA  QA+IK  L+
Sbjct:  101 SAGARDAIPSSNEEHILH---AVLRELTSLEDRRNLNSARQELNESNKRCQLLLANASEAIAYIHDGMHVDANAAYLQLTGYDNADDLAGIPLIDMIAAQHQAEIKQMLK 207          
BLAST of mRNA_P-wetherbeei_contig54814.1.1 vs. uniprot
Match: A0A0S8F3U3_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium SG8_31 TaxID=1703405 RepID=A0A0S8F3U3_9GAMM)

HSP 1 Score: 63.2 bits (152), Expect = 1.660e-8
Identity = 46/130 (35.38%), Postives = 68/130 (52.31%), Query Frame = 1
Query:   58 DTLLAARAAGADDCVGCDSPAQLRHLEQVVLRELASQDCRRQLRQARSRLADFEARHEKLTDSTGDAVACIQEGIVVRANAALAERLGVDDPAALTGQPLIDLVAASQQADIKARLRAVLKGAASSEPLQ 447
            D L A   AGA D V   +P+Q + L +V  REL +    R LR+A    A +  + +     + DA+A +QEG+V+ AN A  +  G DD   L G P++DL A    A +K  L A  +G   ++PL+
Sbjct:   24 DQLSADIIAGAADLV---APSQRQRLFRVFQRELRAARLGRALREAVGTAASYREQLKTFMAGSADAIAHVQEGVVLDANPAWTQLFGRDDMTTLLGTPIMDLFATESHASLKGALVACTQGRWPTDPLR 150          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54814.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0004A7305E7.220e-4053.01EAL domain-containing protein n=1 Tax=Nevskia soli... [more]
A0A3N0VDJ8_9GAMM9.820e-2943.37EAL domain-containing protein n=1 Tax=Stagnimonas ... [more]
A0A318EJC1_9GAMM3.340e-2843.27PAS domain S-box-containing protein n=1 Tax=Sinima... [more]
A0A521N5C8_9GAMM7.630e-2742.17EAL domain-containing protein n=1 Tax=Sinobacterac... [more]
UPI001CA72F131.060e-1333.33EAL domain-containing protein n=1 Tax=Algiphilus s... [more]
W0E0D5_MARPU5.820e-1038.41Diguanylate phosphodiesterase n=5 Tax=Marichromati... [more]
A0A0S7Z301_9GAMM1.970e-932.45Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A5Q4EY97_9GAMM9.360e-931.25EAL domain-containing protein n=1 Tax=Gammaproteob... [more]
UPI0008266E4A1.240e-839.09EAL domain-containing protein n=3 Tax=Endozoicomon... [more]
A0A0S8F3U3_9GAMM1.660e-835.38Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54814contigP-wetherbeei_contig54814:16..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1122604.JONR01000016_gene4373
PFAMsEAL,GGDEF,PAS,PAS_8,PAS_9,Response_reg
Model size513
Max annot lvl2|Bacteria
KEGG koko:K21025
KEGG Pathwayko02025,map02025
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.13e-40
EggNOG OGsCOG2199@1|root,COG5001@1|root,COG2199@2|Bacteria,COG5001@2|Bacteria
Descriptioncyclic-guanylate-specific phosphodiesterase activity
Cds size513
COG categoryT
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186818.1547816-CDS-P-wetherbeei_contig54814:15..5281683186818.1547816-CDS-P-wetherbeei_contig54814:15..528Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54814 16..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54814.1.1prot_P-wetherbeei_contig54814.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54814 16..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54814.1.1

>prot_P-wetherbeei_contig54814.1.1 ID=prot_P-wetherbeei_contig54814.1.1|Name=mRNA_P-wetherbeei_contig54814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
CRRLLPERPLLLLDPPLSLDTLLAARAAGADDCVGCDSPAQLRHLEQVVL
RELASQDCRRQLRQARSRLADFEARHEKLTDSTGDAVACIQEGIVVRANA
ALAERLGVDDPAALTGQPLIDLVAASQQADIKARLRAVLKGAASSEPLQL
QLAGRHGVVTVEAQMILGQQD
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mRNA from alignment at P-wetherbeei_contig54814:16..528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54814.1.1 ID=mRNA_P-wetherbeei_contig54814.1.1|Name=mRNA_P-wetherbeei_contig54814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig54814:16..528+ (Phaeothamnion wetherbeei SAG_119_79)
TGCCGGCGACTGCTGCCGGAACGGCCGCTGCTGCTGCTCGATCCGCCGCT GTCGCTCGACACGCTGCTGGCGGCCCGCGCGGCCGGCGCCGACGATTGCG TCGGCTGCGACAGCCCGGCGCAGCTGCGCCATCTGGAACAGGTGGTGCTG CGCGAGCTGGCGAGCCAGGACTGCCGTCGCCAGCTGCGCCAGGCGCGCAG CCGGCTCGCCGATTTCGAAGCCCGCCACGAGAAGCTCACCGATTCCACCG GCGACGCCGTGGCCTGCATCCAGGAAGGCATCGTGGTGCGCGCCAACGCC GCGCTGGCCGAACGGCTCGGCGTCGATGATCCGGCGGCACTGACCGGCCA GCCGCTGATCGATCTGGTCGCCGCCAGCCAGCAGGCCGACATCAAGGCGC GGCTGCGGGCCGTGCTCAAGGGCGCGGCATCCAGCGAGCCGCTGCAGCTG CAACTGGCTGGCCGTCACGGCGTGGTGACCGTCGAGGCGCAGATGATCCT CGGCCAGCAGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54814:16..528+

>mRNA_P-wetherbeei_contig54814.1.1 ID=mRNA_P-wetherbeei_contig54814.1.1|Name=mRNA_P-wetherbeei_contig54814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig54814:16..528+ (Phaeothamnion wetherbeei SAG_119_79)
TGCCGGCGACTGCTGCCGGAACGGCCGCTGCTGCTGCTCGATCCGCCGCT
GTCGCTCGACACGCTGCTGGCGGCCCGCGCGGCCGGCGCCGACGATTGCG
TCGGCTGCGACAGCCCGGCGCAGCTGCGCCATCTGGAACAGGTGGTGCTG
CGCGAGCTGGCGAGCCAGGACTGCCGTCGCCAGCTGCGCCAGGCGCGCAG
CCGGCTCGCCGATTTCGAAGCCCGCCACGAGAAGCTCACCGATTCCACCG
GCGACGCCGTGGCCTGCATCCAGGAAGGCATCGTGGTGCGCGCCAACGCC
GCGCTGGCCGAACGGCTCGGCGTCGATGATCCGGCGGCACTGACCGGCCA
GCCGCTGATCGATCTGGTCGCCGCCAGCCAGCAGGCCGACATCAAGGCGC
GGCTGCGGGCCGTGCTCAAGGGCGCGGCATCCAGCGAGCCGCTGCAGCTG
CAACTGGCTGGCCGTCACGGCGTGGTGACCGTCGAGGCGCAGATGATCCT
CGGCCAGCAGGAC
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