mRNA_P-wetherbeei_contig54789.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54789.2.1
Unique NamemRNA_P-wetherbeei_contig54789.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54789.2.1 vs. uniprot
Match: A0A0U5ACT6_9PHAE (Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=Stschapovia flagellaris TaxID=243166 RepID=A0A0U5ACT6_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 8.330e-54
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 1
Query:    7 IGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGLASFGSILSSLASLFFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 264
            IGVNLTFFPMHFLGL+GMPRRIPDYPDSYAGWNGLASFGSILSS+ASL FF +VY+TLTKGSVEEANPW+KGRGLAFPALPRVS K
Sbjct:    1 IGVNLTFFPMHFLGLSGMPRRIPDYPDSYAGWNGLASFGSILSSIASLLFFFIVYLTLTKGSVEEANPWIKGRGLAFPALPRVSPK 86          
BLAST of mRNA_P-wetherbeei_contig54789.2.1 vs. uniprot
Match: E6ZES6_ECTSI (Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES6_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.200e-50
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 1
Query:    1 MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGLASFGSILSSLASLFFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 264
            MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNG+ASFGSILSSLASLFFF VVY+TLTKGSVEEANPWVKGRGLAFPAL +VS+K
Sbjct:  443 MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGIASFGSILSSLASLFFFFVVYVTLTKGSVEEANPWVKGRGLAFPALTQVSAK 530          
BLAST of mRNA_P-wetherbeei_contig54789.2.1 vs. uniprot
Match: A0A0S2I710_SACJA (Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina japonica TaxID=88149 RepID=A0A0S2I710_SACJA)

HSP 1 Score: 174 bits (441), Expect = 3.470e-50
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 1
Query:    1 MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGLASFGSILSSLASLFFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 264
            MF+GVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGLASFGSILSS+ASLFFF VVYITLT+GSVEE+NPWVKGRGLAFP LPR SSK
Sbjct:  442 MFLGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGLASFGSILSSIASLFFFFVVYITLTRGSVEESNPWVKGRGLAFPVLPRRSSK 529          
BLAST of mRNA_P-wetherbeei_contig54789.2.1 vs. uniprot
Match: A0A0U4ZTN0_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U4ZTN0_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 5.230e-46
Identity = 72/85 (84.71%), Postives = 82/85 (96.47%), Query Frame = 1
Query:    1 MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGLASFGSILSSLASLFFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRV 255
            MF+GVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNG+ASFGSILSS+ASLFFF VVY+TLT+GSVE++NPWV GRGLAFP+L ++
Sbjct:  339 MFLGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGVASFGSILSSIASLFFFFVVYLTLTQGSVEKSNPWVSGRGLAFPSLAKM 423          
BLAST of mRNA_P-wetherbeei_contig54789.2.1 vs. uniprot
Match: A0A6N3IW01_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=Ecklonia arborea TaxID=1849970 RepID=A0A6N3IW01_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.210e-45
Identity = 71/87 (81.61%), Postives = 77/87 (88.51%), Query Frame = 1
Query:    1 MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGLASFGSILSSLASLFFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSS 261
            MF+GVNLTFFPMHFLGLAGMPRRIPDYPD YAGWNGLASFGSILSS+ASL FF +VYITLT+G VE +NPWVK R  AFP LPR S+
Sbjct:  120 MFLGVNLTFFPMHFLGLAGMPRRIPDYPDCYAGWNGLASFGSILSSVASLLFFFIVYITLTRGYVEGSNPWVKDRKFAFPLLPRRST 206          
BLAST of mRNA_P-wetherbeei_contig54789.2.1 vs. uniprot
Match: A0A8E8PDM6_9PHAE (Cytochrome c oxidase subunit 1 n=2 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PDM6_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 2.890e-45
Identity = 74/88 (84.09%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    1 MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGLASFGSILSSLASLFFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 264
            MF+GVNLTFFPMHFLGLAGMPRRIPDYPD+YAGWN +ASFGSILSS+ASLFFF VVYITLT+GSVEE+NPWVKGRGLAF  +P V  K
Sbjct:  435 MFVGVNLTFFPMHFLGLAGMPRRIPDYPDAYAGWNSIASFGSILSSIASLFFFFVVYITLTQGSVEESNPWVKGRGLAFSPIPDVLLK 522          
BLAST of mRNA_P-wetherbeei_contig54789.2.1 vs. uniprot
Match: A0A8F0K0Q8_9PHAE (Cytochrome c oxidase subunit 1 n=5 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0Q8_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 9.580e-43
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    1 MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGLASFGSILSSLASLFFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 264
            MF+GVN+TFFPMHFLGLAGMPRR+PDYPDS+ GWN LASFGSILSS+ASLFFF VVYITLT+GSV ++N WV+GRGLAFP LPR SS+
Sbjct:  442 MFLGVNITFFPMHFLGLAGMPRRVPDYPDSFFGWNALASFGSILSSVASLFFFFVVYITLTQGSVVKSNYWVEGRGLAFPPLPRRSSQ 529          
BLAST of mRNA_P-wetherbeei_contig54789.2.1 vs. uniprot
Match: A0A0U1XAH8_SARHM (Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XAH8_SARHM)

HSP 1 Score: 154 bits (389), Expect = 1.200e-42
Identity = 69/86 (80.23%), Postives = 78/86 (90.70%), Query Frame = 1
Query:    1 MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGLASFGSILSSLASLFFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVS 258
            MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWN +ASFGSILSS+ASLFFF +VY+TLT+G +EE+NPWVK RG+AFP +   S
Sbjct:  442 MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNSVASFGSILSSVASLFFFYIVYLTLTEGHLEESNPWVKNRGIAFPTIESKS 527          
BLAST of mRNA_P-wetherbeei_contig54789.2.1 vs. uniprot
Match: A0A5K7TLP3_9PHAE (Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A5K7TLP3_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.590e-42
Identity = 70/79 (88.61%), Postives = 76/79 (96.20%), Query Frame = 1
Query:    1 MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGLASFGSILSSLASLFFFVVVYITLTKGSVEEANPWVKGRGLAF 237
            MFIGVNLTFFPMHFLGLAGMPRRIPDYPDS+ GWN +ASFGSILSSLAS+FFF VVY+TLT+GSVEE+NPWVKGRGLAF
Sbjct:  447 MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSFGGWNAVASFGSILSSLASIFFFYVVYVTLTRGSVEESNPWVKGRGLAF 525          
BLAST of mRNA_P-wetherbeei_contig54789.2.1 vs. uniprot
Match: A0A1L6KY02_9PHAE (Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum fluitans TaxID=143163 RepID=A0A1L6KY02_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.700e-30
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGLASFGSILSSLASLFFFVVVYITLTKGSVEEANPWVKGRGLAFPAL 246
            MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWN +AS               VVY+TLT+G +E++NPWV+ RG+AFP +
Sbjct:  442 MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNSVASXXXXXXXXXXXXXXYVVYLTLTQGHLEDSNPWVENRGVAFPVI 523          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54789.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U5ACT6_9PHAE8.330e-5490.70Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=St... [more]
E6ZES6_ECTSI1.200e-5093.18Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyc... [more]
A0A0S2I710_SACJA3.470e-5092.05Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina... [more]
A0A0U4ZTN0_9PHAE5.230e-4684.71Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=... [more]
A0A6N3IW01_9PHAE2.210e-4581.61Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=... [more]
A0A8E8PDM6_9PHAE2.890e-4584.09Cytochrome c oxidase subunit 1 n=2 Tax=Phaeophycea... [more]
A0A8F0K0Q8_9PHAE9.580e-4380.68Cytochrome c oxidase subunit 1 n=5 Tax=Laminariale... [more]
A0A0U1XAH8_SARHM1.200e-4280.23Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyc... [more]
A0A5K7TLP3_9PHAE1.590e-4288.61Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyce... [more]
A0A1L6KY02_9PHAE1.700e-3065.85Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum f... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54789contigP-wetherbeei_contig54789:216..482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog70448.Q0P3F1
PFAMsCOX1
Model size267
Max annot lvl3041|Chlorophyta
KEGG koko:K02256
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Exons1
Evalue9.86e-30
EggNOG OGsCOG0843@1|root,KOG4769@2759|Eukaryota,37QZZ@33090|Viridiplantae,34JUG@3041|Chlorophyta
EC1.9.3.1
DescriptionCytochrome C and Quinol oxidase polypeptide I
Cds size267
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186817.6361618-CDS-P-wetherbeei_contig54789:215..4821683186817.6361618-CDS-P-wetherbeei_contig54789:215..482Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54789 216..482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54789.2.1prot_P-wetherbeei_contig54789.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54789 216..482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54789.2.1

>prot_P-wetherbeei_contig54789.2.1 ID=prot_P-wetherbeei_contig54789.2.1|Name=mRNA_P-wetherbeei_contig54789.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
MFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGLASFGSILSSLASL
FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK*
back to top

mRNA from alignment at P-wetherbeei_contig54789:216..482-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54789.2.1 ID=mRNA_P-wetherbeei_contig54789.2.1|Name=mRNA_P-wetherbeei_contig54789.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig54789:216..482- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTATAGGGGTTAATTTAACTTTTTTCCCAATGCATTTCTTAGGTCT TGCAGGTATGCCAAGACGTATTCCAGATTATCCTGACTCATATGCGGGTT GGAATGGTTTAGCATCATTCGGTTCTATTTTATCTTCTTTAGCATCATTA TTTTTTTTTGTTGTTGTTTATATTACACTTACAAAAGGTTCTGTTGAAGA AGCTAATCCTTGGGTAAAAGGTAGAGGTTTAGCATTTCCAGCGTTACCTC GTGTATCTTCCAAATAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig54789:216..482-

>mRNA_P-wetherbeei_contig54789.2.1 ID=mRNA_P-wetherbeei_contig54789.2.1|Name=mRNA_P-wetherbeei_contig54789.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig54789:216..482- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTATAGGGGTTAATTTAACTTTTTTCCCAATGCATTTCTTAGGTCT
TGCAGGTATGCCAAGACGTATTCCAGATTATCCTGACTCATATGCGGGTT
GGAATGGTTTAGCATCATTCGGTTCTATTTTATCTTCTTTAGCATCATTA
TTTTTTTTTGTTGTTGTTTATATTACACTTACAAAAGGTTCTGTTGAAGA
AGCTAATCCTTGGGTAAAAGGTAGAGGTTTAGCATTTCCAGCGTTACCTC
GTGTATCTTCCAAATAA
back to top