mRNA_P-wetherbeei_contig54738.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54738.1.1
Unique NamemRNA_P-wetherbeei_contig54738.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54738.1.1 vs. uniprot
Match: A0A7I8MYL2_9DELT (Alkaline phosphatase (EC) n=1 Tax=Olavius algarvensis associated proteobacterium Delta 3 TaxID=426688 RepID=A0A7I8MYL2_9DELT)

HSP 1 Score: 89.0 bits (219), Expect = 3.430e-18
Identity = 52/119 (43.70%), Postives = 69/119 (57.98%), Query Frame = 1 
Query:    1 GTAGISPSALTSVAGTLYFSGYNAALGYNSLWRYTGSGNPQLVPGQTFRAPGDLIEADGNLVFTAQVSGANGDREVFKFSGGAFTQLTNIA--STGTNPLELTYFNGKIVFSAQDAPSG 351
            GT    PS LT V  TLYF+  ++ +    LWR     +P+ VPG TF  P  LI A G+L FTA  +GA  DR+V+   G  F +L++I    TG++P+ L YFNGKI F A D  +G
Sbjct: 5798 GTYSSYPSDLTVVGDTLYFTADDSGVTGRQLWRSIDGTDPEPVPGPTFSRPEYLINAGGDLAFTALPNGAIDDRQVYSHDGVTFVKLSDITPDDTGSHPINLAYFNGKIYFRATDHRNG 5916
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BLAST of mRNA_P-wetherbeei_contig54738.1.1 vs. uniprot
Match: A0A3R7VKB6_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TMED89 TaxID=1986647 RepID=A0A3R7VKB6_9PROT)

HSP 1 Score: 53.1 bits (126), Expect = 1.060e-5
Identity = 37/126 (29.37%), Postives = 57/126 (45.24%), Query Frame = 1 
Query:   19 PSALTSVAGTLYFSGYNAALGYNSLWRYTGSGNPQLVP----------GQTFRAPGDLIEADGNLVFT-AQVSGANGDREVFKFSGGAFTQLTNI----ASTGTNPLELTYFNGKIVFSAQDAPSG 351
            P A T + GT+YF GY      +  WRY G+ +P++V           G +F     ++E D    F  +  +    D E++K+ G   T +        S G+NP +LT F+G + F A D   G
Sbjct:  121 PFAYTEILGTVYFEGYTET---DYTWRYDGNLDPEIVSSGSSLFRFSFGPSFNPRPAVVEFDEAAYFAGSDTTVTESDLELWKYDGTTATMVNGPNGIDPSNGSNPSQLTVFDGALYFEASDGTDG 243
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54738.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7I8MYL2_9DELT3.430e-1843.70Alkaline phosphatase (EC) n=1 Tax=Olavius algarven... [more]
A0A3R7VKB6_9PROT1.060e-529.37Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54738contigP-wetherbeei_contig54738:22..375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog243090.RB10423
PFAMsDUF4347,PQQ_2
Model size354
Max annot lvl2|Bacteria
KEGG rclassRC00017,RC00425
KEGG koko:K00571,ko:K01126,ko:K01176,ko:K01729
KEGG ReactionR01030,R01470,R02108,R02112,R03706,R11262
KEGG Pathwayko00051,ko00500,ko00564,ko01100,ko04973,map00051,map00500,map00564,map01100,map04973
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000698
EggNOG OGsCOG1520@1|root,COG3291@1|root,COG1520@2|Bacteria,COG3291@2|Bacteria
EC2.1.1.72,3.1.4.46,3.2.1.1,4.2.2.3
Descriptionmetallopeptidase activity
Cds size354
COG categoryS
CAZyGH13
BRITEko00000,ko00001,ko01000,ko02048
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186817.2718484-CDS-P-wetherbeei_contig54738:21..3751683186817.2718484-CDS-P-wetherbeei_contig54738:21..375Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54738 22..375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54738.1.1prot_P-wetherbeei_contig54738.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54738 22..375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54738.1.1

>prot_P-wetherbeei_contig54738.1.1 ID=prot_P-wetherbeei_contig54738.1.1|Name=mRNA_P-wetherbeei_contig54738.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
GTAGISPSALTSVAGTLYFSGYNAALGYNSLWRYTGSGNPQLVPGQTFRA
PGDLIEADGNLVFTAQVSGANGDREVFKFSGGAFTQLTNIASTGTNPLEL
TYFNGKIVFSAQDAPSGS
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mRNA from alignment at P-wetherbeei_contig54738:22..375+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54738.1.1 ID=mRNA_P-wetherbeei_contig54738.1.1|Name=mRNA_P-wetherbeei_contig54738.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig54738:22..375+ (Phaeothamnion wetherbeei SAG_119_79)
GGAACGGCCGGCATCAGCCCGTCCGCGCTCACCAGCGTCGCCGGGACGTT
GTATTTCAGCGGCTACAACGCCGCACTTGGCTACAACTCGCTGTGGCGCT
ACACCGGTAGCGGAAATCCGCAACTGGTTCCGGGACAAACTTTCCGTGCG
CCCGGAGACCTGATCGAGGCCGACGGCAACCTGGTGTTCACCGCGCAGGT
CAGCGGTGCCAATGGCGATCGCGAGGTGTTCAAGTTCAGCGGTGGCGCGT
TCACCCAGCTGACCAACATCGCCAGCACCGGCACCAACCCGCTGGAACTG
ACTTACTTCAACGGCAAGATCGTATTTTCCGCGCAGGACGCACCGAGCGG
CAGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54738:22..375+

>mRNA_P-wetherbeei_contig54738.1.1 ID=mRNA_P-wetherbeei_contig54738.1.1|Name=mRNA_P-wetherbeei_contig54738.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig54738:22..375+ (Phaeothamnion wetherbeei SAG_119_79)
GGAACGGCCGGCATCAGCCCGTCCGCGCTCACCAGCGTCGCCGGGACGTT
GTATTTCAGCGGCTACAACGCCGCACTTGGCTACAACTCGCTGTGGCGCT
ACACCGGTAGCGGAAATCCGCAACTGGTTCCGGGACAAACTTTCCGTGCG
CCCGGAGACCTGATCGAGGCCGACGGCAACCTGGTGTTCACCGCGCAGGT
CAGCGGTGCCAATGGCGATCGCGAGGTGTTCAAGTTCAGCGGTGGCGCGT
TCACCCAGCTGACCAACATCGCCAGCACCGGCACCAACCCGCTGGAACTG
ACTTACTTCAACGGCAAGATCGTATTTTCCGCGCAGGACGCACCGAGCGG
CAGT
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