mRNA_P-wetherbeei_contig54728.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54728.1.1
Unique NamemRNA_P-wetherbeei_contig54728.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54728.1.1 vs. uniprot
Match: UPI001C3CEAF4 (helix-turn-helix domain-containing protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3CEAF4)

HSP 1 Score: 119 bits (297), Expect = 1.790e-31
Identity = 61/84 (72.62%), Postives = 72/84 (85.71%), Query Frame = 1 
Query:    1 LDELVRWLAERGGAPPAPQHRLQELVPTRVEAMPDTASALSDAGEEVLGAFEEELARARPAGLLRPSSARQSRVLGVLEALSGA 252
            LDELVRWLA+RGGAPPAPQ R+QELVPTR+EAMP+TA  L+ AG++VL AFEEELAR R AG  RPS+ RQ+RVLG LE+L+ A
Sbjct:   72 LDELVRWLADRGGAPPAPQTRMQELVPTRIEAMPETAGVLAAAGDDVLSAFEEELARTR-AGATRPSATRQARVLGALESLADA 154
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BLAST of mRNA_P-wetherbeei_contig54728.1.1 vs. uniprot
Match: UPI001C3E7F80 (helix-turn-helix domain-containing protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3E7F80)

HSP 1 Score: 105 bits (261), Expect = 4.320e-26
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 LDELVRWLAERGGAPPAPQHRLQELVPTRVEAMPDTASALSDAGEEVLGAFEEELARARPAGLLRPSSARQSRVLGVLEAL 243
            LDELVRWL ERGG+PPAPQ RLQELVPTR+EAMP TA  L+DA  +VL AF+EEL R RP+   R S+AR +RV+G L++L
Sbjct:   71 LDELVRWLEERGGSPPAPQSRLQELVPTRLEAMPATADVLADAAPDVLAAFDEELRRVRPSAA-RASAARHARVVGALDSL 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54728.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001C3CEAF41.790e-3172.62helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI001C3E7F804.320e-2666.67helix-turn-helix domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54728contigP-wetherbeei_contig54728:256..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size252
Hectar predicted targeting categoryother localisation
Exons1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186817.1088812-CDS-P-wetherbeei_contig54728:255..5071683186817.1088812-CDS-P-wetherbeei_contig54728:255..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54728 256..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54728.1.1prot_P-wetherbeei_contig54728.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54728 256..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54728.1.1

>prot_P-wetherbeei_contig54728.1.1 ID=prot_P-wetherbeei_contig54728.1.1|Name=mRNA_P-wetherbeei_contig54728.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
LDELVRWLAERGGAPPAPQHRLQELVPTRVEAMPDTASALSDAGEEVLGA
FEEELARARPAGLLRPSSARQSRVLGVLEALSGA
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mRNA from alignment at P-wetherbeei_contig54728:256..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54728.1.1 ID=mRNA_P-wetherbeei_contig54728.1.1|Name=mRNA_P-wetherbeei_contig54728.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig54728:256..507- (Phaeothamnion wetherbeei SAG_119_79)
CTCGATGAGCTGGTCCGGTGGCTCGCCGAGCGCGGCGGCGCTCCGCCCGC
GCCCCAGCATCGACTGCAGGAGCTGGTTCCCACGCGTGTCGAGGCGATGC
CCGACACCGCCTCCGCCCTGTCCGACGCGGGCGAGGAAGTGCTGGGGGCA
TTCGAGGAGGAGCTGGCCCGAGCGCGGCCGGCCGGCCTGCTGAGGCCCTC
CTCGGCGCGCCAGTCGCGCGTGCTCGGCGTGCTCGAGGCGCTGTCGGGCG
CC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54728:256..507-

>mRNA_P-wetherbeei_contig54728.1.1 ID=mRNA_P-wetherbeei_contig54728.1.1|Name=mRNA_P-wetherbeei_contig54728.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig54728:256..507- (Phaeothamnion wetherbeei SAG_119_79)
CTCGATGAGCTGGTCCGGTGGCTCGCCGAGCGCGGCGGCGCTCCGCCCGC
GCCCCAGCATCGACTGCAGGAGCTGGTTCCCACGCGTGTCGAGGCGATGC
CCGACACCGCCTCCGCCCTGTCCGACGCGGGCGAGGAAGTGCTGGGGGCA
TTCGAGGAGGAGCTGGCCCGAGCGCGGCCGGCCGGCCTGCTGAGGCCCTC
CTCGGCGCGCCAGTCGCGCGTGCTCGGCGTGCTCGAGGCGCTGTCGGGCG
CC
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