mRNA_P-wetherbeei_contig54725.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54725.1.1
Unique NamemRNA_P-wetherbeei_contig54725.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54725.1.1 vs. uniprot
Match: A0A2E7XF88_9GAMM (Beta-lactamase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7XF88_9GAMM)

HSP 1 Score: 105 bits (262), Expect = 3.640e-25
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 WGGQRLIDETFVDAALSPPFPEANTAYGYLWWLNKDGGVWRDPLPAANPREGKR-VPRAPENFHSAQGARGKLIFVIPDHRMVVVTLGETVGE 276
            W G+ ++DETFVD AL+P +P+AN AYGYLWWLN D G+WR      N  +G+R  P A  N   A GARGK++ V+PDH +++V++G+T  E
Sbjct:  209 WQGETIMDETFVDEALTPTYPQANGAYGYLWWLNSDQGIWRTT--GGNSGKGERWFPFASSNDFMALGARGKIMIVVPDHNVIMVSMGDTPQE 299          
BLAST of mRNA_P-wetherbeei_contig54725.1.1 vs. uniprot
Match: A0A523L2Q2_9GAMM (Class C beta-lactamase-related serine hydrolase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523L2Q2_9GAMM)

HSP 1 Score: 100 bits (248), Expect = 4.360e-23
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 WGGQRLIDETFVDAALSPPFPEANTAYGYLWWLNKDGGVWRDPLPAANPREGKRVPRAPENFHSAQGARGKLIFVIPDHRMVVVTLGETVGE 276
            W   +L+D  FV  ALSP FP+AN AYGYLWWLN   G WR         EG+    AP N     GARGK++ V+PDH +VVVT+GET  E
Sbjct:  215 WNDTQLLDPDFVKEALSPQFPKANGAYGYLWWLNSGQGTWRST--GGRSGEGRWFSDAPANLFLGLGARGKVLVVVPDHNLVVVTMGETPQE 304          
BLAST of mRNA_P-wetherbeei_contig54725.1.1 vs. uniprot
Match: A0A424L1N6_9GAMM (Class C beta-lactamase-related serine hydrolase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A424L1N6_9GAMM)

HSP 1 Score: 99.0 bits (245), Expect = 8.800e-23
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    1 WGGQRLIDETFVDAALSPPFPEANTAYGYLWWLNKDGGVWRDPLPAANPREGKRVPRAPENFHSAQGARGKLIFVIPDHRMVVVTLGETVGE 276
            W  Q+L+ + FV+ AL+ P+P+AN AYGYLWWLN D G WR    A     G+  P  P+N   A GARGK++ V+PDH +++V++G+T  E
Sbjct:  193 WREQQLMAQEFVEEALTSPYPKANAAYGYLWWLNCDTGTWRST--AGRSGTGRWFPFMPDNVFVALGARGKVMIVVPDHELIMVSMGDTAQE 282          
BLAST of mRNA_P-wetherbeei_contig54725.1.1 vs. uniprot
Match: A0A4V2AKA4_9PROT (Class C beta-lactamase-related serine hydrolase n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4V2AKA4_9PROT)

HSP 1 Score: 84.3 bits (207), Expect = 5.430e-17
Identity = 42/107 (39.25%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    1 WGGQRLIDETFVDAALSPPFPEANTAYGYLWWLNKDGGVWRDPLPAANPREGKRVPRAPENFHSAQGARGKLIFVIPDHRMVVVTLGETVGEILPTLDLWTAIEPLL 321
            WGG++LID+ ++  A++P     N AYGYLWWLN+ G                R P AP + + A GARG+  FV+P+H MV+ T+G    + L   D W A+ P+L
Sbjct:  279 WGGEQLIDKNYIRDAVNPS--AHNPAYGYLWWLNRSG----------------RTPGAPRSMYFAAGARGQFCFVLPEHDMVIATMGFGQAQ-LSAPDAWKALGPIL 366          
BLAST of mRNA_P-wetherbeei_contig54725.1.1 vs. uniprot
Match: A0A7X7D266_9ACTN (Beta-lactamase family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D266_9ACTN)

HSP 1 Score: 76.3 bits (186), Expect = 3.780e-14
Identity = 38/95 (40.00%), Postives = 54/95 (56.84%), Query Frame = 1
Query:    1 WGGQRLIDETFVDAALSPPFPEANTAYGYLWWLNKDGGVWRDPLPAANPRE-------GKRVPRAPENFHSAQGARGKLIFVIPDHRMVVVTLGE 264
            W G++++ E +VD A   P  E N AYG+LWWLN++G +   PL A  P +       G+  P AP++  +AQG  G++I V P    V V LGE
Sbjct:  213 WDGEQIVPEAWVDEATGAPSQEHNAAYGFLWWLNREGQLLT-PLQAVAPTDEASEPVIGQIAPGAPDDLFTAQGLGGQMIMVDPGSETVAVRLGE 306          
BLAST of mRNA_P-wetherbeei_contig54725.1.1 vs. uniprot
Match: UPI00197AB28A (serine hydrolase n=1 Tax=Actinomadura sp. WMMA1423 TaxID=2591108 RepID=UPI00197AB28A)

HSP 1 Score: 70.1 bits (170), Expect = 8.160e-12
Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1
Query:    1 WGGQRLIDETFVDAALSPPFPEANTAYGYLWWLNKDGGVWRDPLPAAN--------PREGKRVPRAPENFHSAQGARGKLIFVIPDHRMVVVTLGET 267
            W G++++   +V+AA   P  + N+AYGYLWWLN+ G + R P+ A +          +G  VP AP     A G   +LI + P+ R VVV LG+T
Sbjct:  274 WQGRQIVSAKYVEAATGRPSTKLNSAYGYLWWLNRPGTI-RGPVAATDLGGAREPGASKGPLVPGAPPQLFWALGLGNQLIQIDPETRTVVVRLGKT 369          
BLAST of mRNA_P-wetherbeei_contig54725.1.1 vs. uniprot
Match: A0A1S1PZ86_9ACTN (Serine hydrolase n=4 Tax=Frankia TaxID=1854 RepID=A0A1S1PZ86_9ACTN)

HSP 1 Score: 67.4 bits (163), Expect = 7.410e-11
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:    1 WGGQRLIDETFVDAALSPPFPEANTAYGYLWWLNKDGGVWRDPLPA------ANP--REGKRVPRAPENFHSAQGARGKLIFVIPDHRMVVVTLGETVGEILP 285
            W GQR++   +V  A      E N AYGYLWWLN++G V   PL A      A+P  R G+ VP AP + + A G   +++ + P    VVV LG   GE  P
Sbjct:  276 WNGQRVVSSDWVTEATGRSSTEMNAAYGYLWWLNREG-VLAQPLAASDISAAADPTTRHGQLVPTAPADMYWAIGLGNQILQIDPGSGTVVVRLGS--GEARP 375          
BLAST of mRNA_P-wetherbeei_contig54725.1.1 vs. uniprot
Match: A0A1E4GY18_9CAUL (Beta-lactamase domain-containing protein n=1 Tax=Phenylobacterium sp. SCN 70-31 TaxID=1660129 RepID=A0A1E4GY18_9CAUL)

HSP 1 Score: 67.0 bits (162), Expect = 9.820e-11
Identity = 38/114 (33.33%), Postives = 58/114 (50.88%), Query Frame = 1
Query:    1 WGGQRLIDETFVDAALSPPFPEANTAYGYLWWLNKDGGVWRDPLPAANPREGKRVPRAPENFHSAQGARGKLIFVIPDHRMVVVTLGET-----VGEILPTLD--LWTAIEPLL 321
            WGG++L+D  +V  +++P     N  YG+LWWLN  G                R+P+AP    +A GA G+ +FV+P+ ++VV T+G        G     LD  +W A+ P L
Sbjct:  273 WGGRQLVDADYVRESVTPS--ARNPDYGFLWWLNTTG----------------RLPQAPCGMFNASGAFGQYVFVVPEAKLVVATMGFADPQGGAGGPAARLDARIWEALGPAL 368          
BLAST of mRNA_P-wetherbeei_contig54725.1.1 vs. uniprot
Match: A0A850G1Y8_9DELT (Serine hydrolase n=1 Tax=Pseudenhygromyxa sp. WMMC2535 TaxID=2712867 RepID=A0A850G1Y8_9DELT)

HSP 1 Score: 65.9 bits (159), Expect = 2.560e-10
Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = 1
Query:    1 WGGQRLIDETFVDAALSPPFPEANTAYGYLWWLNKDGGVWRDPLPAANPREGKRVPRAPENFHSAQGARGKLIFVIPDHRMVVVTLGE 264
            W GQ ++   ++  A  P     N AYGY+WWLN+DG V     P     +G+ +P + E    A GA G+L++V P+   VVV L E
Sbjct:  269 WDGQWVVPPWWLQEATQPS-TALNDAYGYMWWLNRDGHVVEPSFPGRIEYDGQLIPASTEEAFMAIGAFGQLVYVDPEEDYVVVRLFE 355          
BLAST of mRNA_P-wetherbeei_contig54725.1.1 vs. uniprot
Match: A0A0P7BPA9_9ACTN (Beta-lactamase n=7 Tax=Frankia TaxID=1854 RepID=A0A0P7BPA9_9ACTN)

HSP 1 Score: 65.5 bits (158), Expect = 3.550e-10
Identity = 36/103 (34.95%), Postives = 52/103 (50.49%), Query Frame = 1
Query:    1 WGGQRLIDETFVDAALSPPFPEANTAYGYLWWLNKDGGVWRDPLPAAN--------PREGKRVPRAPENFHSAQGARGKLIFVIPDHRMVVVTLGETVGEILP 285
            W G++++   +VDAA      E N AYGYLWWLN++G V   PL A++         + G  VP AP +   A G   +++ + P    VVV LG      +P
Sbjct:  277 WNGEQIVSGDWVDAATGTSSTEMNAAYGYLWWLNREG-VLAQPLAASDISAAADTTKKNGSLVPGAPADMFWAIGLGNQILQIDPGSGTVVVRLGTPEARPVP 378          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54725.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7XF88_9GAMM3.640e-2550.54Beta-lactamase domain-containing protein n=1 Tax=G... [more]
A0A523L2Q2_9GAMM4.360e-2351.09Class C beta-lactamase-related serine hydrolase n=... [more]
A0A424L1N6_9GAMM8.800e-2346.74Class C beta-lactamase-related serine hydrolase n=... [more]
A0A4V2AKA4_9PROT5.430e-1739.25Class C beta-lactamase-related serine hydrolase n=... [more]
A0A7X7D266_9ACTN3.780e-1440.00Beta-lactamase family protein n=1 Tax=Acidimicrobi... [more]
UPI00197AB28A8.160e-1238.14serine hydrolase n=1 Tax=Actinomadura sp. WMMA1423... [more]
A0A1S1PZ86_9ACTN7.410e-1139.81Serine hydrolase n=4 Tax=Frankia TaxID=1854 RepID=... [more]
A0A1E4GY18_9CAUL9.820e-1133.33Beta-lactamase domain-containing protein n=1 Tax=P... [more]
A0A850G1Y8_9DELT2.560e-1037.50Serine hydrolase n=1 Tax=Pseudenhygromyxa sp. WMMC... [more]
A0A0P7BPA9_9ACTN3.550e-1034.95Beta-lactamase n=7 Tax=Frankia TaxID=1854 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54725contigP-wetherbeei_contig54725:1..327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog551789.ATVJ01000001_gene1648
Preferred namenylB
PFAMsBeta-lactamase
Model size327
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.2e-16
EggNOG OGsCOG1680@1|root,COG1680@2|Bacteria,1P3SQ@1224|Proteobacteria,2TTI5@28211|Alphaproteobacteria,43XFI@69657|Hyphomonadaceae
DescriptionBeta-lactamase
Cds size327
COG categoryV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186817.0785036-CDS-P-wetherbeei_contig54725:0..3271683186817.0785036-CDS-P-wetherbeei_contig54725:0..327Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54725 1..327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54725.1.1prot_P-wetherbeei_contig54725.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54725 1..327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54725.1.1

>prot_P-wetherbeei_contig54725.1.1 ID=prot_P-wetherbeei_contig54725.1.1|Name=mRNA_P-wetherbeei_contig54725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
WGGQRLIDETFVDAALSPPFPEANTAYGYLWWLNKDGGVWRDPLPAANPR
EGKRVPRAPENFHSAQGARGKLIFVIPDHRMVVVTLGETVGEILPTLDLW
TAIEPLLT*
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mRNA from alignment at P-wetherbeei_contig54725:1..327+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54725.1.1 ID=mRNA_P-wetherbeei_contig54725.1.1|Name=mRNA_P-wetherbeei_contig54725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig54725:1..327+ (Phaeothamnion wetherbeei SAG_119_79)
TGGGGCGGCCAGCGGTTGATCGACGAGACTTTTGTCGACGCAGCGCTCAG CCCGCCGTTCCCTGAAGCCAACACGGCCTATGGCTATCTCTGGTGGTTGA ACAAGGATGGCGGCGTCTGGCGCGATCCATTGCCGGCGGCCAATCCGCGT GAGGGGAAGCGGGTGCCGCGAGCACCGGAAAACTTCCATTCCGCGCAAGG GGCACGCGGCAAACTGATCTTTGTCATTCCAGACCACCGGATGGTGGTGG TGACACTCGGAGAAACAGTCGGCGAAATCCTGCCAACGCTCGATCTGTGG ACCGCGATCGAGCCGTTGCTGACGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54725:1..327+

>mRNA_P-wetherbeei_contig54725.1.1 ID=mRNA_P-wetherbeei_contig54725.1.1|Name=mRNA_P-wetherbeei_contig54725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig54725:1..327+ (Phaeothamnion wetherbeei SAG_119_79)
TGGGGCGGCCAGCGGTTGATCGACGAGACTTTTGTCGACGCAGCGCTCAG
CCCGCCGTTCCCTGAAGCCAACACGGCCTATGGCTATCTCTGGTGGTTGA
ACAAGGATGGCGGCGTCTGGCGCGATCCATTGCCGGCGGCCAATCCGCGT
GAGGGGAAGCGGGTGCCGCGAGCACCGGAAAACTTCCATTCCGCGCAAGG
GGCACGCGGCAAACTGATCTTTGTCATTCCAGACCACCGGATGGTGGTGG
TGACACTCGGAGAAACAGTCGGCGAAATCCTGCCAACGCTCGATCTGTGG
ACCGCGATCGAGCCGTTGCTGACGTAG
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