mRNA_P-wetherbeei_contig54723.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54723.1.1
Unique NamemRNA_P-wetherbeei_contig54723.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54723.1.1 vs. uniprot
Match: A0A085F626_9HYPH (CRISPR locus-related DNA-binding protein n=10 Tax=Devosia TaxID=46913 RepID=A0A085F626_9HYPH)

HSP 1 Score: 318 bits (815), Expect = 1.380e-107
Identity = 153/166 (92.17%), Postives = 161/166 (96.99%), Query Frame = 1
Query:    4 MSRNFLVVDPEEGIEVLKGLASPIRVKILKLLHMQGPMNGNDIAEKLGLPQSTVSTNIQILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKPLRSNSIEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVPDTFLDPDRMKTGLIWFTRGYVEYQFPNN 501
            MSRNFLVVDPEEGIEVLKGLAS IR++ILKLLH++G MNGNDIAEKLGLPQST+STNIQ+LE AGLIRTETQKARKGNQKICHS FDEVLVMFKEDI PL+SNSIEVAMPLGLYTSCEVSAPCGLCS+EGIIGLLDVPDTFLDPDRMKTGLIWFTRGYVEYQFPNN
Sbjct:    1 MSRNFLVVDPEEGIEVLKGLASTIRIRILKLLHVEGSMNGNDIAEKLGLPQSTISTNIQVLEAAGLIRTETQKARKGNQKICHSMFDEVLVMFKEDISPLKSNSIEVAMPLGLYTSCEVSAPCGLCSSEGIIGLLDVPDTFLDPDRMKTGLIWFTRGYVEYQFPNN 166          
BLAST of mRNA_P-wetherbeei_contig54723.1.1 vs. uniprot
Match: A0A0F5FJU4_9HYPH (ArsR family transcriptional regulator n=10 Tax=Hyphomicrobiales TaxID=356 RepID=A0A0F5FJU4_9HYPH)

HSP 1 Score: 316 bits (809), Expect = 1.130e-106
Identity = 150/166 (90.36%), Postives = 162/166 (97.59%), Query Frame = 1
Query:    4 MSRNFLVVDPEEGIEVLKGLASPIRVKILKLLHMQGPMNGNDIAEKLGLPQSTVSTNIQILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKPLRSNSIEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVPDTFLDPDRMKTGLIWFTRGYVEYQFPNN 501
            MSRNFLV+DPEEG+EVLKGLAS IRVK+LKLLH +GP+NGNDIAE+LGLPQSTVSTN+QILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKPLRSN+IEVAMPLGLYTSCEVSAPCGLCS +GIIGLLDVP+TFLDPDRMK GLIWFTRG++EYQFPNN
Sbjct:    1 MSRNFLVIDPEEGLEVLKGLASAIRVKMLKLLHTEGPLNGNDIAERLGLPQSTVSTNLQILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKPLRSNTIEVAMPLGLYTSCEVSAPCGLCSVDGIIGLLDVPNTFLDPDRMKAGLIWFTRGFLEYQFPNN 166          
BLAST of mRNA_P-wetherbeei_contig54723.1.1 vs. uniprot
Match: A0A0F5FRV9_9HYPH (ArsR family transcriptional regulator n=1 Tax=Devosia geojensis TaxID=443610 RepID=A0A0F5FRV9_9HYPH)

HSP 1 Score: 314 bits (804), Expect = 6.500e-106
Identity = 151/166 (90.96%), Postives = 161/166 (96.99%), Query Frame = 1
Query:    4 MSRNFLVVDPEEGIEVLKGLASPIRVKILKLLHMQGPMNGNDIAEKLGLPQSTVSTNIQILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKPLRSNSIEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVPDTFLDPDRMKTGLIWFTRGYVEYQFPNN 501
            MSRNFLVVDPEEGIEVLKGLAS IRVKILKLLH++GPMNGN+IAE+L LPQSTVSTNIQILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDI PL +N++EVAMPLGLYTSC+VSAPCGLCS+EGIIGLLDVPDTFLDP+RMK GLIWFTRGYVEYQFPNN
Sbjct:    1 MSRNFLVVDPEEGIEVLKGLASTIRVKILKLLHVEGPMNGNEIAERLELPQSTVSTNIQILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDITPLHANTVEVAMPLGLYTSCQVSAPCGLCSSEGIIGLLDVPDTFLDPERMKAGLIWFTRGYVEYQFPNN 166          
BLAST of mRNA_P-wetherbeei_contig54723.1.1 vs. uniprot
Match: A0A1H9ADI2_9HYPH (Predicted transcriptional regulator n=2 Tax=Devosia sp. YR412 TaxID=1881030 RepID=A0A1H9ADI2_9HYPH)

HSP 1 Score: 313 bits (801), Expect = 2.420e-105
Identity = 148/167 (88.62%), Postives = 161/167 (96.41%), Query Frame = 1
Query:    1 AMSRNFLVVDPEEGIEVLKGLASPIRVKILKLLHMQGPMNGNDIAEKLGLPQSTVSTNIQILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKPLRSNSIEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVPDTFLDPDRMKTGLIWFTRGYVEYQFPNN 501
            AMSRNFLVVDPE+ ++VL+GLASP+RVKILKLLH++GPMNGNDIAEKL LPQSTVSTNIQILE AGLIRTETQKARKGNQKICHSTFDEVLVMFKED+KPL+SN+IEVAMPLGLYTSC VSAPCGLCS +GIIGLLDVPDTFL+PDRMK GLIWFTRGY+EYQFPNN
Sbjct:    7 AMSRNFLVVDPEDNLDVLRGLASPVRVKILKLLHVEGPMNGNDIAEKLELPQSTVSTNIQILESAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDVKPLKSNTIEVAMPLGLYTSCHVSAPCGLCSADGIIGLLDVPDTFLEPDRMKAGLIWFTRGYLEYQFPNN 173          
BLAST of mRNA_P-wetherbeei_contig54723.1.1 vs. uniprot
Match: A0A0Q8IMR9_9HYPH (ArsR family transcriptional regulator n=10 Tax=Bacteria TaxID=2 RepID=A0A0Q8IMR9_9HYPH)

HSP 1 Score: 311 bits (796), Expect = 1.070e-104
Identity = 148/166 (89.16%), Postives = 162/166 (97.59%), Query Frame = 1
Query:    4 MSRNFLVVDPEEGIEVLKGLASPIRVKILKLLHMQGPMNGNDIAEKLGLPQSTVSTNIQILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKPLRSNSIEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVPDTFLDPDRMKTGLIWFTRGYVEYQFPNN 501
            MSRNFLVVDPEE IEVLKGLASPIRV+ILKLLH++GP+NGNDIA++L LPQSTVSTN+QILE AGLIRTETQKARKGNQKICHSTFDEVLVMFKEDI+PL+SNSIEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVP+T+L+PDRMK GLIWFTRG++EYQFPNN
Sbjct:    1 MSRNFLVVDPEEDIEVLKGLASPIRVRILKLLHVEGPLNGNDIADRLDLPQSTVSTNLQILETAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIRPLKSNSIEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVPETYLEPDRMKAGLIWFTRGFLEYQFPNN 166          
BLAST of mRNA_P-wetherbeei_contig54723.1.1 vs. uniprot
Match: A0A1E4DSU4_9HYPH (ArsR family transcriptional regulator n=2 Tax=Devosiaceae TaxID=2831106 RepID=A0A1E4DSU4_9HYPH)

HSP 1 Score: 311 bits (796), Expect = 1.070e-104
Identity = 150/166 (90.36%), Postives = 160/166 (96.39%), Query Frame = 1
Query:    4 MSRNFLVVDPEEGIEVLKGLASPIRVKILKLLHMQGPMNGNDIAEKLGLPQSTVSTNIQILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKPLRSNSIEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVPDTFLDPDRMKTGLIWFTRGYVEYQFPNN 501
            MSRNFLVVDPEE ++VLKGLAS IRVKILKLLH++GP+NGNDIAE+L LPQSTVSTN+QILE AGLIRTETQKARKGNQKICHSTFDEVLVMFKEDI  LRSN+IEVAMPLGLYTSC+VSAPCGLCSTEGIIGLLDVPDTFLDP+RMKTGLIWFTRGYVEYQFPNN
Sbjct:    1 MSRNFLVVDPEEDLDVLKGLASAIRVKILKLLHIEGPLNGNDIAERLSLPQSTVSTNLQILENAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIGQLRSNTIEVAMPLGLYTSCDVSAPCGLCSTEGIIGLLDVPDTFLDPERMKTGLIWFTRGYVEYQFPNN 166          
BLAST of mRNA_P-wetherbeei_contig54723.1.1 vs. uniprot
Match: A0A0Q7I2F0_9HYPH (ArsR family transcriptional regulator n=2 Tax=unclassified Devosia TaxID=196773 RepID=A0A0Q7I2F0_9HYPH)

HSP 1 Score: 306 bits (784), Expect = 7.130e-103
Identity = 145/166 (87.35%), Postives = 156/166 (93.98%), Query Frame = 1
Query:    4 MSRNFLVVDPEEGIEVLKGLASPIRVKILKLLHMQGPMNGNDIAEKLGLPQSTVSTNIQILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKPLRSNSIEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVPDTFLDPDRMKTGLIWFTRGYVEYQFPNN 501
            MSRNFLV+DPE+GI+VLKGLASP+RV ILKLLHMQGPMNGNDIA  L LPQSTVSTNIQILE AGLIRTETQKARKG+QKICHS FDEVLV FK+D+KPL+SN+IEVAMP+GLYTSC VSAPCGLCS +GIIGLLDVPDTFLDPDRMK GLIWFTRGYVEYQFPNN
Sbjct:    1 MSRNFLVIDPEDGIDVLKGLASPVRVSILKLLHMQGPMNGNDIARHLALPQSTVSTNIQILESAGLIRTETQKARKGSQKICHSLFDEVLVTFKDDVKPLKSNTIEVAMPIGLYTSCAVSAPCGLCSADGIIGLLDVPDTFLDPDRMKAGLIWFTRGYVEYQFPNN 166          
BLAST of mRNA_P-wetherbeei_contig54723.1.1 vs. uniprot
Match: A0A0F5PV16_9HYPH (Predicted transcriptional regulator n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A0F5PV16_9HYPH)

HSP 1 Score: 305 bits (781), Expect = 1.970e-102
Identity = 148/166 (89.16%), Postives = 158/166 (95.18%), Query Frame = 1
Query:    4 MSRNFLVVDPEEGIEVLKGLASPIRVKILKLLHMQGPMNGNDIAEKLGLPQSTVSTNIQILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKPLRSNSIEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVPDTFLDPDRMKTGLIWFTRGYVEYQFPNN 501
            MSRNFLV+DPE+GI VLKGLAS IR+K+LKLLH++GPMNGNDIA +LGLPQSTVSTN+QILE AGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKP RSN IEVAMPLGLYTSCEVSAPCGLCS +GIIGLLDVPDTFLDP RMKTGLIWFTRG+VEYQFPNN
Sbjct:    1 MSRNFLVIDPEDGIAVLKGLASSIRIKMLKLLHVEGPMNGNDIAARLGLPQSTVSTNLQILESAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKP-RSNVIEVAMPLGLYTSCEVSAPCGLCSVDGIIGLLDVPDTFLDPGRMKTGLIWFTRGFVEYQFPNN 165          
BLAST of mRNA_P-wetherbeei_contig54723.1.1 vs. uniprot
Match: A0A5B9DJT9_9HYPH (Helix-turn-helix domain-containing protein n=2 Tax=Devosiaceae TaxID=2831106 RepID=A0A5B9DJT9_9HYPH)

HSP 1 Score: 304 bits (778), Expect = 5.820e-102
Identity = 146/166 (87.95%), Postives = 156/166 (93.98%), Query Frame = 1
Query:    4 MSRNFLVVDPEEGIEVLKGLASPIRVKILKLLHMQGPMNGNDIAEKLGLPQSTVSTNIQILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKPLRSNSIEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVPDTFLDPDRMKTGLIWFTRGYVEYQFPNN 501
            MSRNFLVVDPEEG+EVL+GLAS IR+KILKLLH++GP+N NDIAE L LPQSTVS+N+QILE AGLIRTETQKARKGNQKICHSTFDEVLVMFKEDI PL   +IEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVPDTFLDP+RMK GLIWFTRGYVEYQFPNN
Sbjct:    1 MSRNFLVVDPEEGLEVLRGLASAIRIKILKLLHVRGPLNVNDIAEALALPQSTVSSNVQILEDAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDINPLHKEAIEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVPDTFLDPERMKAGLIWFTRGYVEYQFPNN 166          
BLAST of mRNA_P-wetherbeei_contig54723.1.1 vs. uniprot
Match: A0A6M1SPQ9_9HYPH (Helix-turn-helix domain-containing protein n=1 Tax=Devosia aurantiaca TaxID=2714858 RepID=A0A6M1SPQ9_9HYPH)

HSP 1 Score: 302 bits (774), Expect = 2.280e-101
Identity = 142/166 (85.54%), Postives = 157/166 (94.58%), Query Frame = 1
Query:    4 MSRNFLVVDPEEGIEVLKGLASPIRVKILKLLHMQGPMNGNDIAEKLGLPQSTVSTNIQILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKPLRSNSIEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVPDTFLDPDRMKTGLIWFTRGYVEYQFPNN 501
            MSRNFLV+DPE+G+EVL+GLASPIR+++LKLLH+QGP+NGNDIA KL LPQSTVSTN+QILE AGLIRTE QKARKGNQKICHSTFDEVLVMFKED+KPL +NSIEVAMPLGLYTSCEVSAPCGLCS +GI+GLLDVPDTFLDP RM  GLIWFTRG+VEYQFPNN
Sbjct:    1 MSRNFLVIDPEDGMEVLRGLASPIRIRMLKLLHVQGPLNGNDIAAKLDLPQSTVSTNLQILENAGLIRTEMQKARKGNQKICHSTFDEVLVMFKEDMKPLGNNSIEVAMPLGLYTSCEVSAPCGLCSADGIVGLLDVPDTFLDPGRMNAGLIWFTRGFVEYQFPNN 166          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54723.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A085F626_9HYPH1.380e-10792.17CRISPR locus-related DNA-binding protein n=10 Tax=... [more]
A0A0F5FJU4_9HYPH1.130e-10690.36ArsR family transcriptional regulator n=10 Tax=Hyp... [more]
A0A0F5FRV9_9HYPH6.500e-10690.96ArsR family transcriptional regulator n=1 Tax=Devo... [more]
A0A1H9ADI2_9HYPH2.420e-10588.62Predicted transcriptional regulator n=2 Tax=Devosi... [more]
A0A0Q8IMR9_9HYPH1.070e-10489.16ArsR family transcriptional regulator n=10 Tax=Bac... [more]
A0A1E4DSU4_9HYPH1.070e-10490.36ArsR family transcriptional regulator n=2 Tax=Devo... [more]
A0A0Q7I2F0_9HYPH7.130e-10387.35ArsR family transcriptional regulator n=2 Tax=uncl... [more]
A0A0F5PV16_9HYPH1.970e-10289.16Predicted transcriptional regulator n=3 Tax=Hyphom... [more]
A0A5B9DJT9_9HYPH5.820e-10287.95Helix-turn-helix domain-containing protein n=2 Tax... [more]
A0A6M1SPQ9_9HYPH2.280e-10185.54Helix-turn-helix domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54723contigP-wetherbeei_contig54723:1..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1502724.FF80_02403
Preferred namecelI
PFAMsHTH_20,HTH_5
Model size501
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.17e-108
EggNOG OGsCOG4189@1|root,COG4189@2|Bacteria,1QQJ4@1224|Proteobacteria,2TUIM@28211|Alphaproteobacteria
DescriptionTranscriptional regulator
Cds size498
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186817.0189586-CDS-P-wetherbeei_contig54723:0..4981683186817.0189586-CDS-P-wetherbeei_contig54723:0..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54723 1..498 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186817.0385463-UTR-P-wetherbeei_contig54723:498..5011683186817.0385463-UTR-P-wetherbeei_contig54723:498..501Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54723 499..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54723.1.1prot_P-wetherbeei_contig54723.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54723 1..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54723.1.1

>prot_P-wetherbeei_contig54723.1.1 ID=prot_P-wetherbeei_contig54723.1.1|Name=mRNA_P-wetherbeei_contig54723.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MSRNFLVVDPEEGIEVLKGLASPIRVKILKLLHMQGPMNGNDIAEKLGLP
QSTVSTNIQILEGAGLIRTETQKARKGNQKICHSTFDEVLVMFKEDIKPL
RSNSIEVAMPLGLYTSCEVSAPCGLCSTEGIIGLLDVPDTFLDPDRMKTG
LIWFTRGYVEYQFPNN
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mRNA from alignment at P-wetherbeei_contig54723:1..501-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54723.1.1 ID=mRNA_P-wetherbeei_contig54723.1.1|Name=mRNA_P-wetherbeei_contig54723.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig54723:1..501- (Phaeothamnion wetherbeei SAG_119_79)
GCCATGAGCCGTAATTTTCTAGTTGTCGATCCCGAAGAGGGTATCGAGGT TCTCAAGGGGCTGGCGTCGCCGATCCGGGTCAAAATCCTCAAGCTGCTGC ATATGCAGGGGCCGATGAACGGCAATGATATTGCCGAGAAACTTGGCCTG CCGCAATCGACCGTATCGACCAATATCCAGATTCTGGAGGGCGCCGGGCT GATCCGCACTGAGACTCAGAAGGCGCGGAAGGGCAATCAGAAAATCTGCC ACTCCACGTTCGACGAGGTGCTGGTGATGTTCAAGGAGGACATCAAGCCG CTGCGCTCGAACTCGATCGAGGTGGCGATGCCGCTGGGCCTTTATACGAG CTGCGAGGTGTCGGCGCCGTGCGGGCTGTGCTCGACGGAGGGGATCATCG GGCTTCTGGACGTGCCGGACACGTTTCTCGATCCGGACCGAATGAAGACG GGGCTGATCTGGTTCACGCGGGGATATGTGGAATATCAGTTCCCCAACAA T
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54723:1..501-

>mRNA_P-wetherbeei_contig54723.1.1 ID=mRNA_P-wetherbeei_contig54723.1.1|Name=mRNA_P-wetherbeei_contig54723.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig54723:1..501- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCGTAATTTTCTAGTTGTCGATCCCGAAGAGGGTATCGAGGTTCT
CAAGGGGCTGGCGTCGCCGATCCGGGTCAAAATCCTCAAGCTGCTGCATA
TGCAGGGGCCGATGAACGGCAATGATATTGCCGAGAAACTTGGCCTGCCG
CAATCGACCGTATCGACCAATATCCAGATTCTGGAGGGCGCCGGGCTGAT
CCGCACTGAGACTCAGAAGGCGCGGAAGGGCAATCAGAAAATCTGCCACT
CCACGTTCGACGAGGTGCTGGTGATGTTCAAGGAGGACATCAAGCCGCTG
CGCTCGAACTCGATCGAGGTGGCGATGCCGCTGGGCCTTTATACGAGCTG
CGAGGTGTCGGCGCCGTGCGGGCTGTGCTCGACGGAGGGGATCATCGGGC
TTCTGGACGTGCCGGACACGTTTCTCGATCCGGACCGAATGAAGACGGGG
CTGATCTGGTTCACGCGGGGATATGTGGAATATCAGTTCCCCAACAAT
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