mRNA_P-wetherbeei_contig54663.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54663.1.1
Unique NamemRNA_P-wetherbeei_contig54663.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54663.1.1 vs. uniprot
Match: UPI001C3DD820 (heat-inducible transcriptional repressor HrcA n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3DD820)

HSP 1 Score: 265 bits (676), Expect = 8.430e-86
Identity = 137/165 (83.03%), Postives = 148/165 (89.70%), Query Frame = 1
Query:    1 GAFLNDRIVGLAVGSRTIDGRLEDPSLSPKERGFLAVLAPAITGLDAGAPGSIFIGGQARFLAEQRHLDLLAIDALMESLEERYQLLALLRGALSRNQVYLRIGTELPDQSLVGLSMVAANYGVPRRNLGTVSLFGPTRMDYRLAMATVRGAAQILSRYVEGVYE 495
            GAFLN+++ G+ VGSR I+GRL DPSL  +ERGFL VLAPAIT LD G   SIFIGG+ARFLAEQRHLDL+AIDALMESLEERY LLA+LRGALSRNQVYLRIG ELPD+SL GLSMVAANYGV RRNLGTVSL GPTRMDYRLAMATVRGAAQ+LSRYVEGVYE
Sbjct:  196 GAFLNEQLTGVTVGSRLIEGRLADPSLGMRERGFLGVLAPAITDLDPGVEESIFIGGRARFLAEQRHLDLMAIDALMESLEERYALLAMLRGALSRNQVYLRIGAELPDRSLSGLSMVAANYGVARRNLGTVSLIGPTRMDYRLAMATVRGAAQLLSRYVEGVYE 360          
BLAST of mRNA_P-wetherbeei_contig54663.1.1 vs. uniprot
Match: UPI001C3DFDD0 (heat-inducible transcriptional repressor HrcA n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3DFDD0)

HSP 1 Score: 253 bits (647), Expect = 1.720e-81
Identity = 133/165 (80.61%), Postives = 143/165 (86.67%), Query Frame = 1
Query:    1 GAFLNDRIVGLAVGSRTIDGRLEDPSLSPKERGFLAVLAPAITGLDAGAPGSIFIGGQARFLAEQRHLDLLAIDALMESLEERYQLLALLRGALSRNQVYLRIGTELPDQSLVGLSMVAANYGVPRRNLGTVSLFGPTRMDYRLAMATVRGAAQILSRYVEGVYE 495
            GAFLN+R+ GL VGSR +  RLE+PSLS  ER FL VL PAIT LD   P SI IGG+ARFLAEQRHLDL+AIDALMESLEERYQLL LLRGALSRNQVYLRIG+E+P Q + GLSMVAANYGV RRNLGTVSL GPTRMDYRLAMATVRGAAQ+LSRYVEGVYE
Sbjct:  190 GAFLNERLAGLTVGSRMVGTRLEEPSLSATERRFLDVLTPAITELDPADPASIHIGGRARFLAEQRHLDLIAIDALMESLEERYQLLELLRGALSRNQVYLRIGSEIPGQRMSGLSMVAANYGVARRNLGTVSLIGPTRMDYRLAMATVRGAAQLLSRYVEGVYE 354          
BLAST of mRNA_P-wetherbeei_contig54663.1.1 vs. uniprot
Match: A0A7W0TG10_9ACTN (Heat-inducible transcription repressor HrcA n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7W0TG10_9ACTN)

HSP 1 Score: 157 bits (397), Expect = 4.540e-44
Identity = 83/164 (50.61%), Postives = 114/164 (69.51%), Query Frame = 1
Query:    4 AFLNDRIVGLAVGSRTIDGRLEDPSLSPKERGFLAVLAPAITGLDAGAPGSIFIGGQARFLAEQRHLDLLAIDALMESLEERYQLLALLRGALSRNQVYLRIGTELPDQSLVGLSMVAANYGVPRRNLGTVSLFGPTRMDYRLAMATVRGAAQILSRYVEGVYE 495
            ++LN+ +VG  +G+RT+  RL +P+L P ER FL  LAPA   L A A  S+++ G AR LAE R  D+  ++ L+E LE R  +L +L  AL + ++Y+RIG E    +L GLS+VAANYG+P+RNLGTVS+ GPTRMDY +A+  VR AA  LSR+VE VY+
Sbjct:  172 SYLNEALVGKGLGARTLRSRLTEPTLPPTERSFLEGLAPAFIDLAATAGDSLYVEGTARLLAEHRFQDVSQLNELLELLERRVSMLGVLSAALDQRELYVRIGGENEAPALRGLSLVAANYGLPQRNLGTVSVIGPTRMDYGVAIGAVRTAALQLSRFVEDVYD 335          
BLAST of mRNA_P-wetherbeei_contig54663.1.1 vs. uniprot
Match: UPI00040C1D1F (heat-inducible transcriptional repressor HrcA n=1 Tax=Solirubrobacter soli TaxID=363832 RepID=UPI00040C1D1F)

HSP 1 Score: 153 bits (386), Expect = 1.850e-42
Identity = 79/164 (48.17%), Postives = 111/164 (67.68%), Query Frame = 1
Query:    1 GAFLNDRIVGLAVGSRTIDGRLEDPSLSPKERGFLAVLAPAITGLDAGAPGSIFIGGQARFLAEQRHLDLLAIDALMESLEERYQLLALLRGALSRNQVYLRIGTELPDQSLVGLSMVAANYGVPRRNLGTVSLFGPTRMDYRLAMATVRGAAQILSRYVEGVY 492
            G++LN+R+VG+ +G+R +  +L DPSL  +ER F+  LAP  T L   A  ++++ G  R ++E R  DL  ++ALME LE R  +L +L  AL     Y+RIG E P  +L  LS+VAANYG+P+RNLGTVS+ GPTRMDY  A+ +VR AA  LSR++E +Y
Sbjct:  171 GSYLNERLVGMGLGARMLHSKLADPSLGARERSFIEDLAPVFTELVETAEDTLYVDGAHRLVSEYRIQDLSQLNALMEMLERRVSMLGVLSAALDSRSSYVRIGVENPQPALQSLSLVAANYGLPQRNLGTVSVIGPTRMDYARAIRSVREAAFELSRFIEELY 334          
BLAST of mRNA_P-wetherbeei_contig54663.1.1 vs. uniprot
Match: A0A7V9Q1D9_9ACTN (Heat-inducible transcription repressor HrcA n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7V9Q1D9_9ACTN)

HSP 1 Score: 153 bits (386), Expect = 2.280e-42
Identity = 81/164 (49.39%), Postives = 110/164 (67.07%), Query Frame = 1
Query:    4 AFLNDRIVGLAVGSRTIDGRLEDPSLSPKERGFLAVLAPAITGLDAGAPGSIFIGGQARFLAEQRHLDLLAIDALMESLEERYQLLALLRGALSRNQVYLRIGTELPDQSLVGLSMVAANYGVPRRNLGTVSLFGPTRMDYRLAMATVRGAAQILSRYVEGVYE 495
            +FLN+ +VGL +G+R  + RL D +L P ER F+  + PA T L+  A   +++ G AR LAE R  D+  ++ALM+ LE +  LL LL+ AL     Y+RIG+E  D +L  L++VAANYG+P+RNLGTVS+ GPTRMDY L +  VR  A  LSR+VE VYE
Sbjct:  178 SFLNETLVGLGIGARMFNFRLNDAALGPTERAFVESIRPAFTQLEQTAGDDLYVEGAARLLAECRWQDVSQLNALMDLLEHKRSLLGLLKNALGERGAYVRIGSENTDPALQTLALVAANYGLPQRNLGTVSVIGPTRMDYALTIRAVRETAFQLSRFVEDVYE 341          
BLAST of mRNA_P-wetherbeei_contig54663.1.1 vs. uniprot
Match: A0A660L4N3_9ACTN (Heat-inducible transcription repressor HrcA n=1 Tax=Solirubrobacter pauli TaxID=166793 RepID=A0A660L4N3_9ACTN)

HSP 1 Score: 152 bits (383), Expect = 5.180e-42
Identity = 81/164 (49.39%), Postives = 109/164 (66.46%), Query Frame = 1
Query:    1 GAFLNDRIVGLAVGSRTIDGRLEDPSLSPKERGFLAVLAPAITGLDAGAPGSIFIGGQARFLAEQRHLDLLAIDALMESLEERYQLLALLRGALSRNQVYLRIGTELPDQSLVGLSMVAANYGVPRRNLGTVSLFGPTRMDYRLAMATVRGAAQILSRYVEGVY 492
            G++LN+R+VG+ +G+R +  RL D SL   ER F+  LAPA   L   A  ++++ G  R L+E R  D+  ++ALME LE R  +L +L  AL     Y+RIG E P  +L  LS+VAANYG+P+RNLGTVS+ GPTRMDY  A+ TVR AA  LSR+VE +Y
Sbjct:  171 GSYLNERLVGMGLGARMLGSRLNDVSLPATERAFVTELAPAFLELVETADDTLYVDGAHRLLSEYRFQDVSQLNALMEMLERRVSMLGVLSTALGSRGTYVRIGIENPQPALQSLSLVAANYGLPQRNLGTVSVIGPTRMDYSRAIRTVREAAHELSRFVEELY 334          
BLAST of mRNA_P-wetherbeei_contig54663.1.1 vs. uniprot
Match: A0A7V9F0C1_9ACTN (Heat-inducible transcription repressor HrcA n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7V9F0C1_9ACTN)

HSP 1 Score: 152 bits (383), Expect = 6.520e-42
Identity = 81/164 (49.39%), Postives = 111/164 (67.68%), Query Frame = 1
Query:    4 AFLNDRIVGLAVGSRTIDGRLEDPSLSPKERGFLAVLAPAITGLDAGAPGSIFIGGQARFLAEQRHLDLLAIDALMESLEERYQLLALLRGALSRNQVYLRIGTELPDQSLVGLSMVAANYGVPRRNLGTVSLFGPTRMDYRLAMATVRGAAQILSRYVEGVYE 495
            ++LN+ + G++VG+R +  +L    L P+ER FL  LAPA T L+  A  ++F+ G AR L E R  +L  + AL+++LE R  LLA++R +LS + VYLRIG+E P   L  +SMVAANYGV RRNLG V++ GP RMDY LA+  VR AA  LSR+V  VY+
Sbjct:  180 SYLNEVMGGMSVGARMLHAKLTAIDLDPRERAFLETLAPAFTELEDSAGDTLFVDGAARLLTEHRFQELPQLSALLDALERRVALLAVMRASLSESSVYLRIGSENPTPELRSVSMVAANYGVARRNLGAVTVLGPLRMDYPLAIMAVRQAAAELSRFVAEVYD 343          
BLAST of mRNA_P-wetherbeei_contig54663.1.1 vs. uniprot
Match: A0A7K0R6L8_9ACTN (Heat-inducible transcription repressor HrcA n=2 Tax=root TaxID=1 RepID=A0A7K0R6L8_9ACTN)

HSP 1 Score: 148 bits (373), Expect = 1.310e-41
Identity = 83/165 (50.30%), Postives = 109/165 (66.06%), Query Frame = 1
Query:    1 GAFLNDRIVGLAVGSRTIDGRLEDPSLSPKERGFLAVLAPAITGLDAGAPGSIFIGGQARFLAEQRHLDLLAIDALMESLEERYQLLALLRGALSRNQVYLRIGTELPDQSLVGLSMVAANYGVPRRNLGTVSLFGPTRMDYRLAMATVRGAAQILSRYVEGVYE 495
            G +LN+R+VGL +G+R ++ RL+DPSL   E+ FL  L PA   L A    ++++ G AR LA  R  DL  I+ L+ +LE R  LL +LR AL    V +RIG+E    +L  LS+VAA YG+P+R LGTVS+ GP RMDY  A+ATVR AA  LSRYVE VY+
Sbjct:   70 GEYLNERLVGLGLGARMVNSRLQDPSLGVWEQRFLEALGPAFAELSATQEDTVYVEGAARLLAADRLQDLAQINELVTALERRVALLGVLRVALGERGVLVRIGSENELPALRSLSVVAAGYGLPQRKLGTVSVIGPVRMDYGEAIATVREAAVQLSRYVEDVYD 234          
BLAST of mRNA_P-wetherbeei_contig54663.1.1 vs. uniprot
Match: UPI00040A832A (heat-inducible transcriptional repressor HrcA n=1 Tax=Solirubrobacter sp. URHD0082 TaxID=1298857 RepID=UPI00040A832A)

HSP 1 Score: 150 bits (378), Expect = 2.950e-41
Identity = 78/164 (47.56%), Postives = 111/164 (67.68%), Query Frame = 1
Query:    1 GAFLNDRIVGLAVGSRTIDGRLEDPSLSPKERGFLAVLAPAITGLDAGAPGSIFIGGQARFLAEQRHLDLLAIDALMESLEERYQLLALLRGALSRNQVYLRIGTELPDQSLVGLSMVAANYGVPRRNLGTVSLFGPTRMDYRLAMATVRGAAQILSRYVEGVY 492
            G++LN+++VG  +G+R +  RL DP+L+  ER F+  L+PA T L   A  ++++ G  R L+E R  D+  ++ALME LE R  LL +L  AL     Y+RIG E  + +L  LS+VAANYG+P+RNLGTVS+ GPTRMDY  A+ +VR AA  LSR++E +Y
Sbjct:  172 GSYLNEKLVGTGLGARMLHSRLADPALAASERAFVEELSPAFTELAETAEDTLYVDGAHRLLSEYRFQDVSQLNALMEMLERRVSLLGVLTAALDSRDAYVRIGRENSEPALRSLSLVAANYGLPQRNLGTVSVIGPTRMDYARAIRSVRDAAFQLSRFMEELY 335          
BLAST of mRNA_P-wetherbeei_contig54663.1.1 vs. uniprot
Match: A0A7K0QNV0_9ACTN (Heat-inducible transcription repressor HrcA n=2 Tax=root TaxID=1 RepID=A0A7K0QNV0_9ACTN)

HSP 1 Score: 150 bits (378), Expect = 3.080e-41
Identity = 83/165 (50.30%), Postives = 107/165 (64.85%), Query Frame = 1
Query:    1 GAFLNDRIVGLAVGSRTIDGRLEDPSLSPKERGFLAVLAPAITGLDAGAPGSIFIGGQARFLAEQRHLDLLAIDALMESLEERYQLLALLRGALSRNQVYLRIGTELPDQSLVGLSMVAANYGVPRRNLGTVSLFGPTRMDYRLAMATVRGAAQILSRYVEGVYE 495
            G +LN+R+ GL +G+R +  RL+DPSL P E  FL  L PA   L A    ++++ G AR L   R  DL  I+ L+ +LE R  LL +LR AL +  V +RIG+E    +L  LS+VAA YG+P+RNLGTVS+ GP RMDY   +ATVR AA  LSRYVE VYE
Sbjct:  172 GEYLNERLAGLGLGARMLHSRLQDPSLGPSEERFLQALIPAFGELGAMQEDTLYMDGAARLLGVDRLQDLAQINELLTALERRVTLLGVLRVALGQRDVLVRIGSENELPALRSLSVVAAGYGLPQRNLGTVSVIGPLRMDYAATIATVREAAHQLSRYVEDVYE 336          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54663.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3DD8208.430e-8683.03heat-inducible transcriptional repressor HrcA n=1 ... [more]
UPI001C3DFDD01.720e-8180.61heat-inducible transcriptional repressor HrcA n=1 ... [more]
A0A7W0TG10_9ACTN4.540e-4450.61Heat-inducible transcription repressor HrcA n=1 Ta... [more]
UPI00040C1D1F1.850e-4248.17heat-inducible transcriptional repressor HrcA n=1 ... [more]
A0A7V9Q1D9_9ACTN2.280e-4249.39Heat-inducible transcription repressor HrcA n=1 Ta... [more]
A0A660L4N3_9ACTN5.180e-4249.39Heat-inducible transcription repressor HrcA n=1 Ta... [more]
A0A7V9F0C1_9ACTN6.520e-4249.39Heat-inducible transcription repressor HrcA n=1 Ta... [more]
A0A7K0R6L8_9ACTN1.310e-4150.30Heat-inducible transcription repressor HrcA n=2 Ta... [more]
UPI00040A832A2.950e-4147.56heat-inducible transcriptional repressor HrcA n=1 ... [more]
A0A7K0QNV0_9ACTN3.080e-4150.30Heat-inducible transcription repressor HrcA n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54663contigP-wetherbeei_contig54663:1..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog469383.Cwoe_2842
Preferred namehrcA
PFAMsHrcA,HrcA_DNA-bdg
Model size498
Max annot lvl84995|Rubrobacteria
KEGG koko:K03705
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.74e-40
EggNOG OGsCOG1420@1|root,COG1420@2|Bacteria,2GKF5@201174|Actinobacteria,4CP6H@84995|Rubrobacteria
DescriptionNegative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
Cds size498
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186816.2930367-CDS-P-wetherbeei_contig54663:0..4981683186816.2930367-CDS-P-wetherbeei_contig54663:0..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54663 1..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54663.1.1prot_P-wetherbeei_contig54663.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54663 1..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54663.1.1

>prot_P-wetherbeei_contig54663.1.1 ID=prot_P-wetherbeei_contig54663.1.1|Name=mRNA_P-wetherbeei_contig54663.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
GAFLNDRIVGLAVGSRTIDGRLEDPSLSPKERGFLAVLAPAITGLDAGAP
GSIFIGGQARFLAEQRHLDLLAIDALMESLEERYQLLALLRGALSRNQVY
LRIGTELPDQSLVGLSMVAANYGVPRRNLGTVSLFGPTRMDYRLAMATVR
GAAQILSRYVEGVYE*
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mRNA from alignment at P-wetherbeei_contig54663:1..498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54663.1.1 ID=mRNA_P-wetherbeei_contig54663.1.1|Name=mRNA_P-wetherbeei_contig54663.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig54663:1..498+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGCGTTCCTCAACGACCGCATCGTGGGCCTCGCGGTGGGGTCGCGGAC CATCGACGGCCGCCTCGAGGATCCCTCGCTGTCGCCCAAGGAGCGGGGCT TCCTGGCGGTTCTGGCCCCCGCGATCACGGGTCTCGACGCCGGGGCCCCC GGCAGCATCTTCATCGGGGGACAGGCGCGCTTCCTGGCCGAGCAGCGCCA CCTCGATCTGCTGGCGATCGACGCCCTGATGGAGAGCCTCGAGGAGCGGT ACCAGCTGCTCGCCCTGCTGCGGGGGGCGCTCAGCCGGAACCAGGTCTAC CTGCGCATCGGCACCGAGCTGCCCGACCAGAGCCTGGTCGGCCTCAGTAT GGTGGCCGCCAACTACGGGGTGCCCCGGCGGAATCTCGGCACCGTGTCGC TGTTCGGCCCGACCCGTATGGACTACCGGCTCGCGATGGCGACGGTGCGC GGGGCAGCGCAGATCCTGTCGCGTTATGTGGAGGGCGTGTATGAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54663:1..498+

>mRNA_P-wetherbeei_contig54663.1.1 ID=mRNA_P-wetherbeei_contig54663.1.1|Name=mRNA_P-wetherbeei_contig54663.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig54663:1..498+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGCGTTCCTCAACGACCGCATCGTGGGCCTCGCGGTGGGGTCGCGGAC
CATCGACGGCCGCCTCGAGGATCCCTCGCTGTCGCCCAAGGAGCGGGGCT
TCCTGGCGGTTCTGGCCCCCGCGATCACGGGTCTCGACGCCGGGGCCCCC
GGCAGCATCTTCATCGGGGGACAGGCGCGCTTCCTGGCCGAGCAGCGCCA
CCTCGATCTGCTGGCGATCGACGCCCTGATGGAGAGCCTCGAGGAGCGGT
ACCAGCTGCTCGCCCTGCTGCGGGGGGCGCTCAGCCGGAACCAGGTCTAC
CTGCGCATCGGCACCGAGCTGCCCGACCAGAGCCTGGTCGGCCTCAGTAT
GGTGGCCGCCAACTACGGGGTGCCCCGGCGGAATCTCGGCACCGTGTCGC
TGTTCGGCCCGACCCGTATGGACTACCGGCTCGCGATGGCGACGGTGCGC
GGGGCAGCGCAGATCCTGTCGCGTTATGTGGAGGGCGTGTATGAGTGA
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