mRNA_P-wetherbeei_contig5464.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5464.1.1
Unique NamemRNA_P-wetherbeei_contig5464.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5464.1.1 vs. uniprot
Match: D8LJH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH1_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.240e-10
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 3 
Query:  726 SAFLKVENCSFFAGEDSLLFLLHRYAYPGRFSNLEAEFRREYFQLSCLFRVMMDQLYERSSRMLLDGVGAWADYLPAFAAAVNPK 980
            S  +++EN S F+GE++ L LL R  YPGR S+LE  F REY QLS LFR   D L+E  S  ++D +  W  +L +FA AV  K
Sbjct:   43 STQVRLENGSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFEMHSHRVMDNLAFWGPHLRSFARAVYRK 127
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BLAST of mRNA_P-wetherbeei_contig5464.1.1 vs. uniprot
Match: A0A7S3B5V3_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B5V3_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 5.570e-6
Identity = 44/123 (35.77%), Postives = 65/123 (52.85%), Query Frame = 3 
Query:  636 SFVRLRADW-----CWNNVRFRKSDIQSLKEALRISAFLKVENCSFFAGEDSLLFLLHRYAYPGRFSNLEAEFRREYFQLSCLFRVMMDQLYE-----RSSRMLLDGVGAWADYLPAFAAAVN 974
            SF R+   W     C +  RF  +DI+ L  ALR  + L+  +     GE++LL LL R AYP ++S+L  E      +L  +F+  +D +YE     R SR L     AWA++ P FAAA++
Sbjct:   97 SFQRVEELWASSTKCKDMFRFELADIRELLTALRFPSELRTPSRFVACGEEALLILLRRMAYPSKWSDLCWEAGCSTSRLCEVFQAAVDHVYETFDYLRDSRSL----EAWANHFPLFAAAIH 215
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5464.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJH1_ECTSI1.240e-1047.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3B5V3_9EUKA5.570e-635.77Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5464contigP-wetherbeei_contig5464:185..1542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4787.PITG_18331T0
PFAMsPX
Model size1358
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.82e-06
EggNOG OGs28KIT@1|root,2QT07@2759|Eukaryota,3QB3E@4776|Peronosporales
DescriptionPX domain
Cds size582
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186816.0703936-UTR-P-wetherbeei_contig5464:184..5081683186816.0703936-UTR-P-wetherbeei_contig5464:184..508Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5464 185..508 -
1683186816.0869758-UTR-P-wetherbeei_contig5464:1090..15421683186816.0869758-UTR-P-wetherbeei_contig5464:1090..1542Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5464 1091..1542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186816.079149-CDS-P-wetherbeei_contig5464:508..10901683186816.079149-CDS-P-wetherbeei_contig5464:508..1090Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5464 509..1090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5464.1.1prot_P-wetherbeei_contig5464.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5464 509..1090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5464.1.1

>prot_P-wetherbeei_contig5464.1.1 ID=prot_P-wetherbeei_contig5464.1.1|Name=mRNA_P-wetherbeei_contig5464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp
MLRRLRTVAALRLVSAVRARKRGDQASHRRKKRAALLVLLAGSSLMRPRS
IEQPRFSGRVLSFVRLRADWCWNNVRFRKSDIQSLKEALRISAFLKVENC
SFFAGEDSLLFLLHRYAYPGRFSNLEAEFRREYFQLSCLFRVMMDQLYER
SSRMLLDGVGAWADYLPAFAAAVNPKTGAPTRQEYVTRSLTAL*
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mRNA from alignment at P-wetherbeei_contig5464:185..1542-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5464.1.1 ID=mRNA_P-wetherbeei_contig5464.1.1|Name=mRNA_P-wetherbeei_contig5464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1358bp|location=Sequence derived from alignment at P-wetherbeei_contig5464:185..1542- (Phaeothamnion wetherbeei SAG_119_79)
CTTCCCTCTCCGGCTACAAGAAAGCTCCTTCGAGAGGCTTGCAAACACAA
CAAAGTTGCCTTCTTTTCGGTACTGCTGAATAGCGAGGTGAGCCGATGTA
CACGTTTTTAGGACTCTTCAGCAACGGAGTGTTTGCGTGAAGCGAACTTT
TTAAAGACGTGACGGATGTCACGGACGGACAAGGACCGGCAGGGGGATGT
GGCATATCTAATCTTATTTCGTCCAAGTCAGGTCCTGAACCAAATTCCCA
CAAGCCAAATTCCGCTTAAACAAGGGAGAGGGAAAGAAGGCACAGAACGG
GGCAGAGGCGACGCAAAGTGGCTTCAGTTGCTGAGTGGATACCCTTCCGC
GCAAGCTGCGATCCGAAGTTCCCTCCGCCAAGAATGAGATGAAACATTGG
TGCTCTCAGCCTGCGACAGCGCAGCGGAGGTATTTGCGCTCAAGAACAGG
TGATGCTTCGGCGCCTGCGGACTGTCGCTGCTCTTCGCCTCGTCTCTGCG
GTTCGCGCTCGCAAACGTGGAGATCAGGCATCTCATCGACGAAAGAAGCG
AGCAGCGCTCCTCGTCTTGCTGGCGGGCTCCAGCCTCATGCGGCCGCGGT
CTATTGAGCAGCCTCGATTTTCTGGCCGCGTGCTGTCATTCGTGAGGCTC
CGCGCCGACTGGTGTTGGAACAACGTCCGGTTTCGAAAATCAGACATTCA
GAGTCTGAAGGAAGCCTTGCGCATCAGCGCGTTCCTCAAGGTGGAGAACT
GTTCTTTCTTTGCTGGCGAGGATTCACTTCTCTTTCTCCTGCATCGCTAC
GCCTATCCGGGGCGTTTTTCCAACTTGGAAGCGGAATTCCGCCGGGAGTA
TTTTCAGCTGTCTTGCCTTTTTCGTGTTATGATGGACCAGCTGTACGAGC
GCTCCAGCCGCATGTTGCTCGACGGCGTGGGGGCGTGGGCGGATTACCTC
CCTGCCTTTGCTGCCGCCGTGAACCCCAAAACGGGGGCGCCAACCAGGCA
GGAGTACGTCACGCGTTCGTTGACCGCACTCTGATGCCGACGTCCAGGCC
GTCTCAGGTGGAGGGGCCGCCGGCAGACCAGCAGCGGGAGTGTTACAACA
GACACCACCGCTTGAACGGTCTCAATTTTCAAGGGGTGATGAACCCCAAC
GGAATTGTCTCCGACATGTACGGCCACGGTTCTCGGGCGGCGGCACGACA
GCCATTTCCTGGCAAGGTGCATCTCTTTGACAAGGGGACGGGGCCACCCT
GCGGCGCCGGAAAATTGCACGCTTTTCTTTTCCGTATTCCTATTTTCTGA
ATTTCGTTTGCATTGGATACTTGGTGCGCCCCCACCGATTCTGTTGTTTC
GTCAGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5464:185..1542-

>mRNA_P-wetherbeei_contig5464.1.1 ID=mRNA_P-wetherbeei_contig5464.1.1|Name=mRNA_P-wetherbeei_contig5464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig5464:185..1542- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCGGCGCCTGCGGACTGTCGCTGCTCTTCGCCTCGTCTCTGCGGT
TCGCGCTCGCAAACGTGGAGATCAGGCATCTCATCGACGAAAGAAGCGAG
CAGCGCTCCTCGTCTTGCTGGCGGGCTCCAGCCTCATGCGGCCGCGGTCT
ATTGAGCAGCCTCGATTTTCTGGCCGCGTGCTGTCATTCGTGAGGCTCCG
CGCCGACTGGTGTTGGAACAACGTCCGGTTTCGAAAATCAGACATTCAGA
GTCTGAAGGAAGCCTTGCGCATCAGCGCGTTCCTCAAGGTGGAGAACTGT
TCTTTCTTTGCTGGCGAGGATTCACTTCTCTTTCTCCTGCATCGCTACGC
CTATCCGGGGCGTTTTTCCAACTTGGAAGCGGAATTCCGCCGGGAGTATT
TTCAGCTGTCTTGCCTTTTTCGTGTTATGATGGACCAGCTGTACGAGCGC
TCCAGCCGCATGTTGCTCGACGGCGTGGGGGCGTGGGCGGATTACCTCCC
TGCCTTTGCTGCCGCCGTGAACCCCAAAACGGGGGCGCCAACCAGGCAGG
AGTACGTCACGCGTTCGTTGACCGCACTCTGA
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