mRNA_P-wetherbeei_contig54587.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54587.1.1
Unique NamemRNA_P-wetherbeei_contig54587.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54587.1.1 vs. uniprot
Match: A0A537KRE6_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537KRE6_9PROT)

HSP 1 Score: 59.7 bits (143), Expect = 8.970e-10
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:   10 DRIFFGYMVLFGVAAGAFLATVAGADGFWLKPFFWILIAVGLFDGGSFLLGR-----MLTPNGRMIGFLIGAALTFAIPAAMGKSVSFF 261
            +RIF G+M++ G+AAG  L        F + P+FWILIA+ LF+  +F  GR     ML    R++GF++   L  A+P   G     F
Sbjct:    5 NRIFLGFMIVAGLAAGFVLVAKPELRDFRISPYFWILIAMALFELAAFARGRGAPGTMLAIEIRLLGFVLAIVLMVAVPILAGSPARLF 93
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BLAST of mRNA_P-wetherbeei_contig54587.1.1 vs. uniprot
Match: A0A371B3Z6_9HYPH (Uncharacterized protein n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371B3Z6_9HYPH)

HSP 1 Score: 47.8 bits (112), Expect = 3.760e-5
Identity = 27/86 (31.40%), Postives = 42/86 (48.84%), Query Frame = 1 
Query:    1 MTQDRIFFGYMVLFGVAAGAFLATVAGADGFWLKPFFWILIAVGLFDG-----GSFLLGRMLTPNGRMIGFLIGAALTFAIPAAMG 243
            M  D IF+G+ +L G+AA      V  +  F + P+FWIL+A+ LF+        F  G  L+   R+ GF +   L   +  + G
Sbjct:    1 MRIDWIFYGFSLLIGLAAAGLYIYVPASRSFAVSPYFWILVAIALFETVVMYLRGFQFGPPLSMTHRIAGFALAVGLFLILRTSAG 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54587.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A537KRE6_9PROT8.970e-1037.08Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A371B3Z6_9HYPH3.760e-531.40Uncharacterized protein n=1 Tax=Pseudolabrys sp. G... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54587contigP-wetherbeei_contig54587:209..472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size264
Hectar predicted targeting categorysignal peptide
Exons1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186815.2942245-CDS-P-wetherbeei_contig54587:208..4721683186815.2942245-CDS-P-wetherbeei_contig54587:208..472Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54587 209..472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54587.1.1prot_P-wetherbeei_contig54587.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54587 209..472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54587.1.1

>prot_P-wetherbeei_contig54587.1.1 ID=prot_P-wetherbeei_contig54587.1.1|Name=mRNA_P-wetherbeei_contig54587.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MTQDRIFFGYMVLFGVAAGAFLATVAGADGFWLKPFFWILIAVGLFDGGS
FLLGRMLTPNGRMIGFLIGAALTFAIPAAMGKSVSFF*
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mRNA from alignment at P-wetherbeei_contig54587:209..472-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54587.1.1 ID=mRNA_P-wetherbeei_contig54587.1.1|Name=mRNA_P-wetherbeei_contig54587.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig54587:209..472- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTCAGGACCGGATTTTCTTCGGCTATATGGTGCTGTTCGGCGTGGC
CGCGGGCGCGTTCCTCGCCACTGTCGCGGGCGCGGACGGCTTTTGGCTTA
AACCGTTTTTCTGGATTCTGATCGCGGTCGGGCTGTTCGACGGCGGAAGT
TTTCTGTTGGGGCGAATGCTCACGCCCAACGGGCGGATGATCGGCTTTTT
GATCGGCGCGGCGCTGACATTCGCCATCCCGGCGGCGATGGGAAAGTCGG
TTTCGTTTTTTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54587:209..472-

>mRNA_P-wetherbeei_contig54587.1.1 ID=mRNA_P-wetherbeei_contig54587.1.1|Name=mRNA_P-wetherbeei_contig54587.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig54587:209..472- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTCAGGACCGGATTTTCTTCGGCTATATGGTGCTGTTCGGCGTGGC
CGCGGGCGCGTTCCTCGCCACTGTCGCGGGCGCGGACGGCTTTTGGCTTA
AACCGTTTTTCTGGATTCTGATCGCGGTCGGGCTGTTCGACGGCGGAAGT
TTTCTGTTGGGGCGAATGCTCACGCCCAACGGGCGGATGATCGGCTTTTT
GATCGGCGCGGCGCTGACATTCGCCATCCCGGCGGCGATGGGAAAGTCGG
TTTCGTTTTTTTAG
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