mRNA_P-wetherbeei_contig54573.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54573.1.1
Unique NamemRNA_P-wetherbeei_contig54573.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54573.1.1 vs. uniprot
Match: A0A6N7GPG9_9HYPH (Histidine kinase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GPG9_9HYPH)

HSP 1 Score: 145 bits (367), Expect = 6.770e-38
Identity = 82/168 (48.81%), Postives = 113/168 (67.26%), Query Frame = 1
Query:   13 RDILILVAAGLVGALAEATQLWLLLLATRHFHLADIGSTSLPLIVGDVIGIAVVTPLVLRLVTRLERMPILATAALG-ELLLLLIAILLILYVVVRPPGPLGQSLFYLLFMPVVIAAVRHGIDGACAALAISQIGLVAFLHWHGFELSRFTEYQVLMLVLTLTGLIVG 513
            RD+ +L+A G  GAL  A  L LLL+A      AD+   S+PL+VGDVIGIAV+TPLVLR +  +  + +    A   E+ L +  +LL ++ +       G  LFYL F+PVV+AAVR+G+DGAC  LA++Q+GL+  LHWHG++ + FTE+Q+LMLVLT TGL VG
Sbjct:  140 RDVFLLLAGGTAGALLVALFLSLLLIADEKLSPADLFVVSVPLLVGDVIGIAVMTPLVLRFILHIPHISLQTLRAFAPEVALYVAVVLLFVWFIGLTESESGFKLFYLFFLPVVVAAVRYGLDGACLGLALTQLGLLGLLHWHGYDANVFTEFQILMLVLTATGLTVG 307          
BLAST of mRNA_P-wetherbeei_contig54573.1.1 vs. uniprot
Match: A0A327KT25_9HYPH (Histidine kinase n=1 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327KT25_9HYPH)

HSP 1 Score: 142 bits (358), Expect = 1.140e-36
Identity = 90/172 (52.33%), Postives = 111/172 (64.53%), Query Frame = 1
Query:    7 RTRDILILVAAGLVGALAEATQLWLLLLATRHFHLADIGSTSLPLIVGDVIGIAVVTPLVLRLVTRL---ERMPILATAALGELLLLLIAILLILYVVVRPPGPLGQSLFYLLFMPVVIAAVRHGIDGACAALAISQIGLVAFLHWHGFELSRFTEYQVLMLVLTLTGLIVG 513
            R RD+L+L+AAG  GA   A  L  LL+A       D+ + ++PL+VGDVIGIAV+TPLVLRL       ER    A A + E     + I   L++V   PGP G   F+LL +PVV AAVRHG+DGAC ALA  Q+GLVA LH HG ++  FTEYQ LMLVLT TGL+VG
Sbjct:  126 RLRDVLMLLAAGFAGACLVAVLLTTLLIAFGDLGSRDVLAATVPLLVGDVIGIAVITPLVLRLAAAWRSGERG--FAPALVAEAAAHAVVIGACLWLVTATPGPEGFKYFHLLALPVVTAAVRHGLDGACLALAAVQLGLVALLHLHGHDMRAFTEYQALMLVLTATGLVVG 295          
BLAST of mRNA_P-wetherbeei_contig54573.1.1 vs. uniprot
Match: A0A6N6T044_9HYPH (Histidine kinase n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6T044_9HYPH)

HSP 1 Score: 141 bits (355), Expect = 2.580e-36
Identity = 85/172 (49.42%), Postives = 116/172 (67.44%), Query Frame = 1
Query:    1 LLRTRDILILVAAGLVGALAEATQLWLLLLATRHFHLADIGSTSLPLIVGDVIGIAVVTPLVLRLVTRLERMPILATAA-LGELLLLLIAILLILYVVVRPPGPLGQSLFYLLFMPVVIAAVRHGIDGACAALAISQIGLVAFLHWHGFELSRFTEYQVLMLVLTLTGLIVG 513
            L   RD+L+L+A G  GA A A  L +LLLA     ++D+  +SLPL+VGD IGIAV+TPL+LR   R   +   A A  L E++L ++A    L++++    P       LLF+PVV AAVRHGIDG+C ALA +Q+GLVA LH + ++ + FTE+QV+MLVLTLTGL+VG
Sbjct:  111 LTHVRDVLVLMATGAAGAAASAVLLTVLLLAADELKVSDLAQSSLPLLVGDAIGIAVMTPLLLRASLRWHDITRKALAPFLPEIMLYVLATSFALWMIIGSDSPNYYKYLSLLFLPVVAAAVRHGIDGSCLALAATQLGLVALLHRYKYDAAAFTEFQVVMLVLTLTGLLVG 282          
BLAST of mRNA_P-wetherbeei_contig54573.1.1 vs. uniprot
Match: A0A327KC03_9HYPH (Histidine kinase n=1 Tax=Rhodoplanes elegans TaxID=29408 RepID=A0A327KC03_9HYPH)

HSP 1 Score: 141 bits (355), Expect = 3.500e-36
Identity = 88/172 (51.16%), Postives = 111/172 (64.53%), Query Frame = 1
Query:   13 RDILILVAAGLVGALAEATQLWLLLLATRHFHLADIGSTSLPLIVGDVIGIAVVTPLVLRLVT-----RLERMPILATAALGELLLLLIAILLILYVVVRPPGPLGQSLFYLLFMPVVIAAVRHGIDGACAALAISQIGLVAFLHWHGFELSRFTEYQVLMLVLTLTGLIVG 513
            RD+L+L+AAGL GA   A  L +LL+      L D+ + ++PL+VGDVIGIAV+TPLVLRL        L   P LA   +    ++       L++V   PGP G   F+LL +PVV AAVRHG+DGAC ALA  Q+GLVA LH HG ++  FTEYQ LMLVLT TGL+VG
Sbjct:  132 RDVLLLLAAGLAGACVVALLLTVLLIVFGDLGLRDVLAATVPLLVGDVIGIAVITPLVLRLAAAWRAGELTFAPALALEGMSTAAVIGAC----LWLVTASPGPEGFKYFHLLALPVVTAAVRHGLDGACLALAGVQLGLVALLHLHGHDIRVFTEYQALMLVLTATGLVVG 299          
BLAST of mRNA_P-wetherbeei_contig54573.1.1 vs. uniprot
Match: A0A537TYF1_9PROT (MASE1 domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TYF1_9PROT)

HSP 1 Score: 137 bits (346), Expect = 9.600e-36
Identity = 82/167 (49.10%), Postives = 108/167 (64.67%), Query Frame = 1
Query:   16 DILILVAAGLVGALAEATQLWLLLLATRHFHLADIGSTSLPLIVGDVIGIAVVTPLVLRLVTRLERMPILATAAL-GELLLLLIAILLILYVVVRPPGPLGQSLFYLLFMPVVIAAVRHGIDGACAALAISQIGLVAFLHWHGFELSRFTEYQVLMLVLTLTGLIVG 513
            D+L+L+ AG+ GA+  A  L +LLL        DI  T +PL+VGD IGIAV+TPL LRL+      P+  +  L  E+LL ++ I + L+V++      G   FYLLF+PVV+AAVRHG+DGAC +LA SQI LV  LH H ++   FTE+Q LM  LT TGLIVG
Sbjct:  157 DVLVLLFAGISGAVIVALMLSMLLLTNAEIDFGDIFVTFVPLLVGDAIGIAVMTPLTLRLILNSGGSPLRFSRTLVPEILLYVLFITVALWVIIGAETVNGFKFFYLLFLPVVVAAVRHGLDGACVSLAFSQIALVGVLHIHSYDARAFTEFQTLMFALTATGLIVG 323          
BLAST of mRNA_P-wetherbeei_contig54573.1.1 vs. uniprot
Match: A0A537VHZ4_9PROT (MASE1 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537VHZ4_9PROT)

HSP 1 Score: 137 bits (346), Expect = 4.960e-35
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 1
Query:   16 DILILVAAGLVGALAEATQLWLLLLATRHFHLADIGSTSLPLIVGDVIGIAVVTPLVLRLVTRLERMPILATAALG-ELLLLLIAILLILYVVVRPPGPLGQSLFYLLFMPVVIAAVRHGIDGACAALAISQIGLVAFLHWHGFELSRFTEYQVLMLVLTLTGLIVG 513
            D+ IL+ AG+ GA+  A  L +LLL        D+  T  PL++GD IGIAV+TPL LRL+    R PI  +  L  E+L  ++ + + L++++      G   FYLLF+PVV+AAVRHG+DGAC +L +SQI LV   H H ++   FTE+Q LML+LT TGLIVG
Sbjct:  138 DVFILLFAGISGAILVALMLSILLLTDAEIDFGDVIVTFAPLLIGDAIGIAVMTPLTLRLILNPRRSPIRFSRTLVLEILFYVLLVTVTLWIIIGTQSANGFKFFYLLFVPVVVAAVRHGLDGACVSLGLSQIALVGIAHIHSYDAQAFTEFQTLMLILTATGLIVG 304          
BLAST of mRNA_P-wetherbeei_contig54573.1.1 vs. uniprot
Match: A0A1Q7BQ88_9PROT (Histidine kinase n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BQ88_9PROT)

HSP 1 Score: 137 bits (346), Expect = 5.210e-35
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 1
Query:   16 DILILVAAGLVGALAEATQLWLLLLATRHFHLADIGSTSLPLIVGDVIGIAVVTPLVLRLVTRLERMPILATAALG-ELLLLLIAILLILYVVVRPPGPLGQSLFYLLFMPVVIAAVRHGIDGACAALAISQIGLVAFLHWHGFELSRFTEYQVLMLVLTLTGLIVG 513
            D+ IL+ AG+ GA+  A  L +LLL        D+  T  PL++GD IGIAV+TPL LRL+    R PI  +  L  E+L  ++ + + L++++      G   FYLLF+PVV+AAVRHG+DGAC +L +SQI LV   H H ++   FTE+Q LML+LT TGLIVG
Sbjct:  119 DVFILLFAGISGAILVALMLSILLLTDAEIDFGDVIVTFAPLLIGDAIGIAVMTPLTLRLILNPRRSPIRFSRTLVLEILFYVLLVTVTLWIIIGTQSANGFKFFYLLFVPVVVAAVRHGLDGACVSLGLSQIALVGIAHIHSYDAQAFTEFQTLMLILTATGLIVG 285          
BLAST of mRNA_P-wetherbeei_contig54573.1.1 vs. uniprot
Match: A0A537U1V6_9PROT (Histidine kinase n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537U1V6_9PROT)

HSP 1 Score: 137 bits (346), Expect = 7.230e-35
Identity = 82/167 (49.10%), Postives = 108/167 (64.67%), Query Frame = 1
Query:   16 DILILVAAGLVGALAEATQLWLLLLATRHFHLADIGSTSLPLIVGDVIGIAVVTPLVLRLVTRLERMPILATAAL-GELLLLLIAILLILYVVVRPPGPLGQSLFYLLFMPVVIAAVRHGIDGACAALAISQIGLVAFLHWHGFELSRFTEYQVLMLVLTLTGLIVG 513
            D+L+L+ AG+ GA+  A  L +LLL        DI  T +PL+VGD IGIAV+TPL LRL+      P+  +  L  E+LL ++ I + L+V++      G   FYLLF+PVV+AAVRHG+DGAC +LA SQI LV  LH H ++   FTE+Q LM  LT TGLIVG
Sbjct:  157 DVLVLLFAGISGAVIVALMLSMLLLTNAEIDFGDIFVTFVPLLVGDAIGIAVMTPLTLRLILNSGGSPLRFSRTLVPEILLYVLFITVALWVIIGAETVNGFKFFYLLFLPVVVAAVRHGLDGACVSLAFSQIALVGVLHIHSYDARAFTEFQTLMFALTATGLIVG 323          
BLAST of mRNA_P-wetherbeei_contig54573.1.1 vs. uniprot
Match: A0A327K6G5_9HYPH (HisKA domain-containing protein (Fragment) n=1 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A327K6G5_9HYPH)

HSP 1 Score: 135 bits (340), Expect = 1.370e-34
Identity = 87/177 (49.15%), Postives = 112/177 (63.28%), Query Frame = 1
Query:    1 LLRTRDILILVAAGLVGALAEATQLWLLLLATRHFHLADIGSTSLPLIVGDVIGIAVVTPLVLRLVTRLER------MPILATAALGELLLLLIAILLILYVVVRPPGPLGQSLFYLLFMPVVIAAVRHGIDGACAALAISQIGLVAFLHWHGFELSRFTEYQVLMLVLTLTGLIVG 513
            L R RD+L+L+ AGL GA   A  L LLL+      + D+ +T++PL+VGDV+GIAV+TPL LRLV    +        ++A AA G L+     I   L++V     P G   F+LL +PVV AAVRHG+DGAC ALA  Q+GLVA LH HG ++  FTEYQ LM VLT TGL+ G
Sbjct:  131 LARLRDVLLLLGAGLAGAALVALLLTLLLIGFGELGVQDVLATTVPLLVGDVLGIAVITPLTLRLVAARRKGGSAFGAGVVAEAAAGALV-----IAACLWLVAASGRPDGFKYFHLLALPVVAAAVRHGLDGACLALAGVQLGLVALLHLHGHDVRAFTEYQALMGVLTATGLVAG 302          
BLAST of mRNA_P-wetherbeei_contig54573.1.1 vs. uniprot
Match: A0A447CY61_9HYPH (Histidine kinase n=2 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A447CY61_9HYPH)

HSP 1 Score: 135 bits (340), Expect = 4.840e-34
Identity = 87/177 (49.15%), Postives = 112/177 (63.28%), Query Frame = 1
Query:    1 LLRTRDILILVAAGLVGALAEATQLWLLLLATRHFHLADIGSTSLPLIVGDVIGIAVVTPLVLRLVTRLER------MPILATAALGELLLLLIAILLILYVVVRPPGPLGQSLFYLLFMPVVIAAVRHGIDGACAALAISQIGLVAFLHWHGFELSRFTEYQVLMLVLTLTGLIVG 513
            L R RD+L+L+ AGL GA   A  L LLL+      + D+ +T++PL+VGDV+GIAV+TPL LRLV    +        ++A AA G L+     I   L++V     P G   F+LL +PVV AAVRHG+DGAC ALA  Q+GLVA LH HG ++  FTEYQ LM VLT TGL+ G
Sbjct:  131 LARLRDVLLLLGAGLAGAALVALLLTLLLIGFGELGVQDVLATTVPLLVGDVLGIAVITPLTLRLVAARRKGGLAFGAGVVAEAAAGALV-----IAACLWLVAASGRPDGFKYFHLLALPVVAAAVRHGLDGACLALAGVQLGLVALLHLHGHDVRAFTEYQALMGVLTATGLVAG 302          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54573.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7GPG9_9HYPH6.770e-3848.81Histidine kinase n=1 Tax=Hyphomicrobiales bacteriu... [more]
A0A327KT25_9HYPH1.140e-3652.33Histidine kinase n=1 Tax=Rhodoplanes roseus TaxID=... [more]
A0A6N6T044_9HYPH2.580e-3649.42Histidine kinase n=1 Tax=Hyphomicrobiaceae bacteri... [more]
A0A327KC03_9HYPH3.500e-3651.16Histidine kinase n=1 Tax=Rhodoplanes elegans TaxID... [more]
A0A537TYF1_9PROT9.600e-3649.10MASE1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A537VHZ4_9PROT4.960e-3546.71MASE1 domain-containing protein n=1 Tax=Alphaprote... [more]
A0A1Q7BQ88_9PROT5.210e-3546.71Histidine kinase n=1 Tax=Alphaproteobacteria bacte... [more]
A0A537U1V6_9PROT7.230e-3549.10Histidine kinase n=2 Tax=Alphaproteobacteria bacte... [more]
A0A327K6G5_9HYPH1.370e-3449.15HisKA domain-containing protein (Fragment) n=1 Tax... [more]
A0A447CY61_9HYPH4.840e-3449.15Histidine kinase n=2 Tax=Rhodoplanes piscinae TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54573contigP-wetherbeei_contig54573:11..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1267005.KB911261_gene2327
PFAMsHATPase_c,HisKA,MASE1
Model size513
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.59e-15
EggNOG OGsCOG0642@1|root,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TYYD@28211|Alphaproteobacteria
DescriptionMASE1
Cds size513
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186815.2004428-CDS-P-wetherbeei_contig54573:10..5231683186815.2004428-CDS-P-wetherbeei_contig54573:10..523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54573 11..523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54573.1.1prot_P-wetherbeei_contig54573.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54573 11..523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54573.1.1

>prot_P-wetherbeei_contig54573.1.1 ID=prot_P-wetherbeei_contig54573.1.1|Name=mRNA_P-wetherbeei_contig54573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
LLRTRDILILVAAGLVGALAEATQLWLLLLATRHFHLADIGSTSLPLIVG
DVIGIAVVTPLVLRLVTRLERMPILATAALGELLLLLIAILLILYVVVRP
PGPLGQSLFYLLFMPVVIAAVRHGIDGACAALAISQIGLVAFLHWHGFEL
SRFTEYQVLMLVLTLTGLIVG
back to top

mRNA from alignment at P-wetherbeei_contig54573:11..523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54573.1.1 ID=mRNA_P-wetherbeei_contig54573.1.1|Name=mRNA_P-wetherbeei_contig54573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig54573:11..523+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCTGCGGACGCGCGACATCCTGATCCTGGTGGCAGCGGGCCTCGTAGG GGCGCTGGCAGAAGCGACGCAGCTTTGGCTGCTGCTGCTCGCAACGCGCC ACTTCCACCTTGCCGACATCGGCAGCACGTCGCTGCCGCTGATCGTCGGG GACGTCATCGGTATCGCGGTCGTCACCCCGCTGGTACTGCGCCTCGTGAC GCGGCTGGAGCGTATGCCGATCCTGGCGACAGCGGCGCTCGGTGAATTAT TGCTCCTCTTGATCGCGATCCTGCTGATTTTGTACGTCGTCGTGCGCCCG CCGGGGCCGCTGGGCCAGAGCTTGTTCTATCTTCTGTTCATGCCGGTGGT GATCGCCGCAGTCCGGCACGGCATCGACGGTGCCTGTGCCGCACTTGCAA TCTCCCAGATCGGGCTCGTCGCGTTCCTTCACTGGCATGGATTCGAACTC TCGCGGTTCACCGAGTATCAGGTCCTCATGCTCGTGCTGACGCTGACGGG CTTGATCGTCGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig54573:11..523+

>mRNA_P-wetherbeei_contig54573.1.1 ID=mRNA_P-wetherbeei_contig54573.1.1|Name=mRNA_P-wetherbeei_contig54573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig54573:11..523+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCTGCGGACGCGCGACATCCTGATCCTGGTGGCAGCGGGCCTCGTAGG
GGCGCTGGCAGAAGCGACGCAGCTTTGGCTGCTGCTGCTCGCAACGCGCC
ACTTCCACCTTGCCGACATCGGCAGCACGTCGCTGCCGCTGATCGTCGGG
GACGTCATCGGTATCGCGGTCGTCACCCCGCTGGTACTGCGCCTCGTGAC
GCGGCTGGAGCGTATGCCGATCCTGGCGACAGCGGCGCTCGGTGAATTAT
TGCTCCTCTTGATCGCGATCCTGCTGATTTTGTACGTCGTCGTGCGCCCG
CCGGGGCCGCTGGGCCAGAGCTTGTTCTATCTTCTGTTCATGCCGGTGGT
GATCGCCGCAGTCCGGCACGGCATCGACGGTGCCTGTGCCGCACTTGCAA
TCTCCCAGATCGGGCTCGTCGCGTTCCTTCACTGGCATGGATTCGAACTC
TCGCGGTTCACCGAGTATCAGGTCCTCATGCTCGTGCTGACGCTGACGGG
CTTGATCGTCGGC
back to top