mRNA_P-wetherbeei_contig5457.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5457.1.1
Unique NamemRNA_P-wetherbeei_contig5457.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5457.1.1 vs. uniprot
Match: D7FGV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV4_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 6.010e-12
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 PTASEFIGDKRSFAIVTGVADWLAREQRRSLPALETWAELSDALASMLHHQLHEVVQKAADPAAAKVRAR 210
            P  S+F+GDKRSF++V   A  LA E+R+    +   AE+ +AL SMLHHQLHEVVQKA +P  + VR R
Sbjct:  724 PDRSDFLGDKRSFSMVKIAAHRLAGEKRKGWAVVNVVAEMCEALVSMLHHQLHEVVQKALEPRRSVVRRR 793
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BLAST of mRNA_P-wetherbeei_contig5457.1.1 vs. uniprot
Match: A0A6H5KJX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX9_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.180e-11
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:   10 SEFIGDKRSFAIVTGVADWLAREQRRSLPALETWAELSDALASMLHHQLHEVVQKAADPAAAKVRARQT----LSRIGWRDSV------RLIGAIADALEHHSPAAPL 303
            S+F+GDKRSF++V   A  LA E+R+    +   AE+ +AL SMLHHQLHEVVQKA +P  + VR R      LSR G R  +      + +  +A ALE     APL
Sbjct:  321 SDFLGDKRSFSMVKIAAHRLAGEKRKGWAVVNVVAEMCEALVSMLHHQLHEVVQKALEPRRSVVRRRDPGLGRLSR-GVRGQMSSDACDQTLRTLAPALESLFDVAPL 427
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5457.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGV4_ECTSI6.010e-1252.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJX9_9PHAE2.180e-1144.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5457contigP-wetherbeei_contig5457:3376..3798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65071.PYU1_T014564
Model size423
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000985
EggNOG OGs2BXAI@1|root,2RAAH@2759|Eukaryota,1MCSK@121069|Pythiales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_000780.1
Descriptionfunction. Source PGD
Cds size423
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186815.132321-CDS-P-wetherbeei_contig5457:3375..37981683186815.132321-CDS-P-wetherbeei_contig5457:3375..3798Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5457 3376..3798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5457.1.1prot_P-wetherbeei_contig5457.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5457 3376..3798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5457.1.1

>prot_P-wetherbeei_contig5457.1.1 ID=prot_P-wetherbeei_contig5457.1.1|Name=mRNA_P-wetherbeei_contig5457.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
PTASEFIGDKRSFAIVTGVADWLAREQRRSLPALETWAELSDALASMLHH
QLHEVVQKAADPAAAKVRARQTLSRIGWRDSVRLIGAIADALEHHSPAAP
LPAGPGGGNGGAGSAAAAAAAAADWRLRVRLLTSALLLIRS
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mRNA from alignment at P-wetherbeei_contig5457:3376..3798-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5457.1.1 ID=mRNA_P-wetherbeei_contig5457.1.1|Name=mRNA_P-wetherbeei_contig5457.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig5457:3376..3798- (Phaeothamnion wetherbeei SAG_119_79)
CCCACGGCGTCGGAGTTCATCGGCGACAAGCGATCCTTCGCCATCGTCAC
GGGCGTCGCAGATTGGCTGGCGCGAGAGCAGCGTCGCAGCCTGCCGGCGC
TGGAAACGTGGGCGGAACTGAGTGACGCACTGGCTTCCATGCTACACCAC
CAGCTGCACGAGGTCGTGCAAAAGGCGGCCGATCCGGCGGCGGCGAAAGT
GCGCGCCCGTCAGACGCTAAGTCGCATCGGCTGGCGTGACTCTGTTCGCC
TCATTGGTGCCATCGCCGACGCGTTGGAGCACCACTCGCCTGCCGCTCCT
CTACCGGCCGGTCCCGGCGGCGGCAATGGCGGAGCGGGGTCGGCGGCCGC
TGCAGCGGCTGCAGCGGCGGACTGGCGGCTGAGGGTGCGATTGCTGACAT
CAGCATTGCTTCTCATCCGCTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5457:3376..3798-

>mRNA_P-wetherbeei_contig5457.1.1 ID=mRNA_P-wetherbeei_contig5457.1.1|Name=mRNA_P-wetherbeei_contig5457.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig5457:3376..3798- (Phaeothamnion wetherbeei SAG_119_79)
CCCACGGCGTCGGAGTTCATCGGCGACAAGCGATCCTTCGCCATCGTCAC
GGGCGTCGCAGATTGGCTGGCGCGAGAGCAGCGTCGCAGCCTGCCGGCGC
TGGAAACGTGGGCGGAACTGAGTGACGCACTGGCTTCCATGCTACACCAC
CAGCTGCACGAGGTCGTGCAAAAGGCGGCCGATCCGGCGGCGGCGAAAGT
GCGCGCCCGTCAGACGCTAAGTCGCATCGGCTGGCGTGACTCTGTTCGCC
TCATTGGTGCCATCGCCGACGCGTTGGAGCACCACTCGCCTGCCGCTCCT
CTACCGGCCGGTCCCGGCGGCGGCAATGGCGGAGCGGGGTCGGCGGCCGC
TGCAGCGGCTGCAGCGGCGGACTGGCGGCTGAGGGTGCGATTGCTGACAT
CAGCATTGCTTCTCATCCGCTCC
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