mRNA_P-wetherbeei_contig54539.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54539.1.1
Unique NamemRNA_P-wetherbeei_contig54539.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54539.1.1 vs. uniprot
Match: UPI000E312E77 (cupin domain-containing protein n=1 Tax=Euzebya tangerina TaxID=591198 RepID=UPI000E312E77)

HSP 1 Score: 98.2 bits (243), Expect = 3.910e-22
Identity = 58/127 (45.67%), Postives = 74/127 (58.27%), Query Frame = 1 
Query:    1 ARALGTRGRVRRIESQLLVWQPGPAFARGEGVLDGFDLEHMAVRVLSRNPLTGQQTLLLRLDPGYRQGGAGSHGVWWQAFVLAGTARLGATELRRGAFVHRPAGTVEGPLASEGGALLYVKLDGFLD 381
            A  +G RG VR   S LL   PGP  AR  G  +G DL+ ++VRVLS NP T  QTLL+RL PGY + G+      ++  VL G+  +       G ++ RPAG V+ P+ S  GALLYVKLDG  D
Sbjct:  168 ADTVGPRGWVR-CSSGLLPEIPGPVVARHRGPFEGMDLDRLSVRVLSHNPWTDGQTLLVRLLPGYTESGSAHGTAAYEHVVLEGSYEIAGEMHGTGTYLQRPAGVVDHPMTSADGALLYVKLDGTWD 293
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BLAST of mRNA_P-wetherbeei_contig54539.1.1 vs. uniprot
Match: UPI001E5BA613 (hypothetical protein n=1 Tax=Aeromicrobium sp. Leaf350 TaxID=2876565 RepID=UPI001E5BA613)

HSP 1 Score: 87.0 bits (214), Expect = 4.940e-18
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 1 
Query:    4 RALGTRGRVRRIESQLLVWQPGPAFARGEGVLDGFDLEHMAVRVLSRNPLTGQQTLLLRLDPGYRQGGAGSHGVWWQAFVLAGTARLGATELRRGAFVHRPAGTVEGPLASEGGALLYVKLDGFL 378
            +A+GTRG VR ++   + W  G  +AR +G     D+EH++V+VLS N  TG Q++L+RLDPGYRQ G  +   W   FV +G+  +G   LR G++       V     S  GA ++ K+ GFL
Sbjct:  156 KAMGTRGWVR-LQVDNVPWIRGTDWARTQGDTSLLDVEHLSVKVLSHNYATGAQSILIRLDPGYRQSGPVTLDSWMGVFVTSGSITMGDETLREGSWFSAEGDEVRPAWESADGAEMFAKISGFL 279
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BLAST of mRNA_P-wetherbeei_contig54539.1.1 vs. uniprot
Match: A0A2V7HVE2_9BACT (Cupin_7 domain-containing protein n=2 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7HVE2_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 2.290e-5
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:  130 RVLSRNPLTGQQTLLLRLDPGYRQGGAGSHGVWWQAFVLAGTAR---LGATELRRGAFVHRPAGTVEGPLASEGGALLY 357
            +VLSR+P++G  T LLR  PG R G   +H  W +  ++ G+     LG T    G +  RP G   GP A   GALL+
Sbjct:   35 KVLSRDPVSGDLTRLLRFAPGVRTGETIAHDFWEEVLIVEGSLEDLGLGRT-FSAGMYACRPPGMRHGPYACPRGALLF 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54539.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI000E312E773.910e-2245.67cupin domain-containing protein n=1 Tax=Euzebya ta... [more]
UPI001E5BA6134.940e-1839.20hypothetical protein n=1 Tax=Aeromicrobium sp. Lea... [more]
A0A2V7HVE2_9BACT2.290e-539.24Cupin_7 domain-containing protein n=2 Tax=Candidat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54539contigP-wetherbeei_contig54539:105..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size396
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186814.9304266-CDS-P-wetherbeei_contig54539:104..5001683186814.9304266-CDS-P-wetherbeei_contig54539:104..500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54539 105..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54539.1.1prot_P-wetherbeei_contig54539.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54539 105..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54539.1.1

>prot_P-wetherbeei_contig54539.1.1 ID=prot_P-wetherbeei_contig54539.1.1|Name=mRNA_P-wetherbeei_contig54539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
ARALGTRGRVRRIESQLLVWQPGPAFARGEGVLDGFDLEHMAVRVLSRNP
LTGQQTLLLRLDPGYRQGGAGSHGVWWQAFVLAGTARLGATELRRGAFVH
RPAGTVEGPLASEGGALLYVKLDGFLDFRLA*
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mRNA from alignment at P-wetherbeei_contig54539:105..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54539.1.1 ID=mRNA_P-wetherbeei_contig54539.1.1|Name=mRNA_P-wetherbeei_contig54539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig54539:105..500- (Phaeothamnion wetherbeei SAG_119_79)
GCACGTGCACTCGGCACACGTGGCCGGGTGCGCCGCATCGAGTCGCAATT
GCTGGTGTGGCAGCCGGGACCGGCCTTCGCGCGCGGCGAGGGAGTTCTGG
ACGGATTCGACCTGGAACACATGGCGGTCCGCGTGTTGAGCCGCAATCCG
CTGACCGGCCAGCAGACCTTGCTGCTGCGACTTGATCCGGGCTACCGGCA
GGGTGGCGCGGGTTCGCACGGCGTGTGGTGGCAGGCGTTTGTCCTGGCCG
GCACAGCACGGCTCGGGGCGACCGAATTGCGTCGCGGCGCATTCGTGCAC
AGGCCGGCGGGCACGGTCGAAGGGCCGCTCGCGAGCGAGGGCGGCGCGCT
TCTGTATGTCAAGCTGGACGGGTTCCTCGACTTCAGGCTTGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54539:105..500-

>mRNA_P-wetherbeei_contig54539.1.1 ID=mRNA_P-wetherbeei_contig54539.1.1|Name=mRNA_P-wetherbeei_contig54539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig54539:105..500- (Phaeothamnion wetherbeei SAG_119_79)
GCACGTGCACTCGGCACACGTGGCCGGGTGCGCCGCATCGAGTCGCAATT
GCTGGTGTGGCAGCCGGGACCGGCCTTCGCGCGCGGCGAGGGAGTTCTGG
ACGGATTCGACCTGGAACACATGGCGGTCCGCGTGTTGAGCCGCAATCCG
CTGACCGGCCAGCAGACCTTGCTGCTGCGACTTGATCCGGGCTACCGGCA
GGGTGGCGCGGGTTCGCACGGCGTGTGGTGGCAGGCGTTTGTCCTGGCCG
GCACAGCACGGCTCGGGGCGACCGAATTGCGTCGCGGCGCATTCGTGCAC
AGGCCGGCGGGCACGGTCGAAGGGCCGCTCGCGAGCGAGGGCGGCGCGCT
TCTGTATGTCAAGCTGGACGGGTTCCTCGACTTCAGGCTTGCCTGA
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