mRNA_P-wetherbeei_contig5452.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5452.4.1
Unique NamemRNA_P-wetherbeei_contig5452.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5452.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5452contigP-wetherbeei_contig5452:2105..2883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size779
Hectar predicted targeting categoryother localisation
Exons1
Cds size540
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186814.7789056-UTR-P-wetherbeei_contig5452:2104..22361683186814.7789056-UTR-P-wetherbeei_contig5452:2104..2236Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5452 2105..2236 -
1683186814.8002791-UTR-P-wetherbeei_contig5452:2776..28831683186814.8002791-UTR-P-wetherbeei_contig5452:2776..2883Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5452 2777..2883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186814.7880712-CDS-P-wetherbeei_contig5452:2236..27761683186814.7880712-CDS-P-wetherbeei_contig5452:2236..2776Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5452 2237..2776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5452.4.1prot_P-wetherbeei_contig5452.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5452 2237..2776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5452.4.1

>prot_P-wetherbeei_contig5452.4.1 ID=prot_P-wetherbeei_contig5452.4.1|Name=mRNA_P-wetherbeei_contig5452.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
MSRMSVVPSRLLLSFLNFPGSPPLASRNIRVARSSRWRTSSGTSARRPRR
SARPATPQLPASPRSRPVPRRWAALPARARAARLESPSLLRRCRQPRRRH
RPCRTPRRLPPSNRSVASSTVALRPPPPTDRPHRFALEGAACFQRACCSC
KRPFKNIHVRVVGDRSRWDVCRGRTITKD*
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mRNA from alignment at P-wetherbeei_contig5452:2105..2883-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5452.4.1 ID=mRNA_P-wetherbeei_contig5452.4.1|Name=mRNA_P-wetherbeei_contig5452.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=779bp|location=Sequence derived from alignment at P-wetherbeei_contig5452:2105..2883- (Phaeothamnion wetherbeei SAG_119_79)
GATCTGGCGTAGAACAAACACAAAGCCTCTGCTCCAGGCACTCACGATCC
CACTCAAAAGCAGCGTAAAAAGAAATACAAAAACTGGGTCTGGGTTTTGT
TGTCGCCATGTCCCGCATGAGCGTAGTTCCATCTCGGCTCCTCCTTTCCT
TCTTAAATTTCCCCGGCTCGCCTCCCCTCGCTTCCCGAAACATCAGGGTG
GCGCGCTCCAGCAGATGGAGGACGTCAAGCGGAACGAGCGCAAGACGGCC
AAGGCGTAGCGCAAGGCCAGCAACGCCGCAGCTGCCCGCCTCACCCAGAA
GCAGGCCCGTGCCGAGGCGCTGGGCCGCGCTGCCGGCAAGGGCAAGGGCG
GCAAGATTAGAGAGCCCGAGCTTGTTACGGCGATGTCGCCAGCCACGGCG
CCGTCATCGCCCGTGTCGCACGCCGCGGCGGCTGCCGCCCAGCAACCGTT
CGGTTGCAAGCAGCACGGTGGCGCTAAGGCCGCCGCCGCCAACTGATCGG
CCGCACCGATTTGCGCTCGAGGGAGCAGCATGCTTTCAACGAGCGTGCTG
TTCATGTAAACGGCCGTTTAAAAATATACACGTTCGGGTGGTTGGTGATC
GATCACGATGGGACGTGTGCCGGGGAAGAACGATTACAAAAGATTAGACA
AGAAGAAAGAGTGCGTCCGCCTTGTTAAGACAGCGTAGCGTGGAAAAAAA
TCGATGGAGCGGCTCCGTTCAGGGTGGATGGGAGGTTACAACGAGTGTCT
AACTGCCTAGAAATCACACACAATGAAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5452:2105..2883-

>mRNA_P-wetherbeei_contig5452.4.1 ID=mRNA_P-wetherbeei_contig5452.4.1|Name=mRNA_P-wetherbeei_contig5452.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig5452:2105..2883- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCCGCATGAGCGTAGTTCCATCTCGGCTCCTCCTTTCCTTCTTAAA
TTTCCCCGGCTCGCCTCCCCTCGCTTCCCGAAACATCAGGGTGGCGCGCT
CCAGCAGATGGAGGACGTCAAGCGGAACGAGCGCAAGACGGCCAAGGCGT
AGCGCAAGGCCAGCAACGCCGCAGCTGCCCGCCTCACCCAGAAGCAGGCC
CGTGCCGAGGCGCTGGGCCGCGCTGCCGGCAAGGGCAAGGGCGGCAAGAT
TAGAGAGCCCGAGCTTGTTACGGCGATGTCGCCAGCCACGGCGCCGTCAT
CGCCCGTGTCGCACGCCGCGGCGGCTGCCGCCCAGCAACCGTTCGGTTGC
AAGCAGCACGGTGGCGCTAAGGCCGCCGCCGCCAACTGATCGGCCGCACC
GATTTGCGCTCGAGGGAGCAGCATGCTTTCAACGAGCGTGCTGTTCATGT
AAACGGCCGTTTAAAAATATACACGTTCGGGTGGTTGGTGATCGATCACG
ATGGGACGTGTGCCGGGGAAGAACGATTACAAAAGATTAG
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