mRNA_P-wetherbeei_contig54513.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54513.1.1
Unique NamemRNA_P-wetherbeei_contig54513.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: A0A8I1G7F4_9HYPH (Tyrosine-type recombinase/integrase n=1 Tax=Rhodomicrobium udaipurense TaxID=1202716 RepID=A0A8I1G7F4_9HYPH)

HSP 1 Score: 146 bits (369), Expect = 1.560e-39
Identity = 77/156 (49.36%), Postives = 103/156 (66.03%), Query Frame = 1
Query:   10 RISKNLVDNLGVGQELRDSELKGFGVRRQEGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNP-ASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETPRAA 474
            +++K  +D L  GQ +RD+EL GFG RR+ G P YFVQ RI G+L+ LTIG HG PWT ETARK+A +LL  I  G +P A +R+++  +     SV   ++  HG +LKPRTREEY+RL R  LVPAFGKK + +IT  ++ R H +   TP  A
Sbjct:    8 KVTKTAIDRLQPGQLIRDTELSGFGARRRAGAPVYFVQTRIAGRLRWLTIGTHGIPWTAETARKQALKLLGEIAGGGDPTAPKREAKAQITLKEASVL--FMEQHGPRLKPRTREEYDRLFRLHLVPAFGKKNIIDITRPDIARFHAKRAATPSGA 161          
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: UPI000930DC18 (site-specific integrase n=1 Tax=Hyphomicrobium sp. CS1BSMeth3 TaxID=1892844 RepID=UPI000930DC18)

HSP 1 Score: 143 bits (361), Expect = 5.160e-38
Identity = 75/157 (47.77%), Postives = 99/157 (63.06%), Query Frame = 1
Query:   10 RISKNLVDNLGVGQELRDSELKGFGVRRQE--GVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETPRAA 474
            RI+  +VD L  G ++ D  LKGFGVR+Q     P YFV  RI G+L+R+TIG HGSPWTP TAR+ A  LL +++ GNNP  ER++ R    TF  ++  +L +HG  LK RT E Y   I  +L PAF KK + EIT+ +V +AH  W+E   AA
Sbjct:    7 RITNTVVDGLTAGSQVFDPFLKGFGVRKQSKSATPTYFVLTRIAGRLRRMTIGKHGSPWTPSTARERANHLLQSVQTGNNPILEREAARAKLMTFQELSVQFLEIHGPTLKSRTLETYTDCIELRLRPAFAKKAINEITSQDVAKAHVSWREHKTAA 163          
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: A0A3S0RGW9_HYPSQ (DUF4102 domain-containing protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A3S0RGW9_HYPSQ)

HSP 1 Score: 132 bits (331), Expect = 1.030e-33
Identity = 70/155 (45.16%), Postives = 102/155 (65.81%), Query Frame = 1
Query:   10 RISKNLVDNLGVGQELRDSELKGFGVRRQEGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETPRAA 474
            +++K  +D L  GQ +RD ELKGFG RRQ     YF+  RI G+L+ +TIG+HGSPWT E+ARKEA RLL +I +G +PA+ +  R + + +FT  +  +++ HGAKLK  +R +YE L+R  L PAFG + L +I   +V R H++  + P  A
Sbjct:    8 KVTKAAIDRLVAGQTIRDVELKGFGARRQADAVSYFLLKRINGRLRWMTIGLHGSPWTAESARKEAHRLLGSIASGGDPATLKQER-LENPSFTEASEQFMADHGAKLKAGSRVKYEILLRLYLRPAFGVRRLMDIKRADVLRFHSKLADKPATA 161          
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: A0A1E3W0R1_9HYPH (Uncharacterized protein n=2 Tax=Methyloceanibacter methanicus TaxID=1774968 RepID=A0A1E3W0R1_9HYPH)

HSP 1 Score: 114 bits (286), Expect = 2.450e-27
Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 1
Query:   10 RISKNLVDNLGVGQELRDSELKGFGVRRQEGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETPRAA 474
            R+++N +  +  G+ L D ELKGFG RRQ+    +F++ R  G+ +  TIG  GSPWT +TAR+EA RLLL I  G +P     + R  D T       +L  HG KLKPRT  EY+RL  + ++P  GK  L E    EV R H     TPR A
Sbjct:    6 RLNRNALKKMHPGETLWDGELKGFGARRQKDAVTFFLKCRFRGRQRWCTIGRLGSPWTLDTARREALRLLLGIADGEDPVR---ASRGADTTVKEAVEQFLKEHGPKLKPRTLVEYKRLCEQVIIPKLGKLHLDEDMQREVGRLHAGLSSTPRKA 157          
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: UPI0007F08773 (site-specific integrase n=3 Tax=Rhizobiaceae TaxID=82115 RepID=UPI0007F08773)

HSP 1 Score: 112 bits (281), Expect = 1.190e-26
Identity = 60/146 (41.10%), Postives = 90/146 (61.64%), Query Frame = 1
Query:   10 RISKNLVDNLGVGQELRDSELKGFGVR-RQEGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAH 444
            +I+K +VD L  G+ + D+E+KGFGVR R  G   Y ++ RIGG+ + +TIG HGSPWT ++AR +A RLL    AG +PASERD R+   +             G  +K +T ++YE LIR+ ++PA G+  +A++   +V R H
Sbjct:    4 KITKRVVDQLMPGETVWDTEVKGFGVRCRSSGAKYYGLKTRIGGRQRWITIGRHGSPWTADSARADALRLLGQKAAGKDPASERDHRKQAVSVKELCERFLADYAGTHVKAKTAKDYEHLIRKLIIPALGRHRIADVKRPDVSRLH 149          
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: UPI001FF62A93 (site-specific integrase n=1 Tax=Aliiroseovarius sp. S1123 TaxID=2926404 RepID=UPI001FF62A93)

HSP 1 Score: 112 bits (280), Expect = 1.660e-26
Identity = 63/153 (41.18%), Postives = 88/153 (57.52%), Query Frame = 1
Query:   10 RISKNLVDNLGVGQELRDSELKGFGVRRQEGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHG-AKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETP 465
            ++S   VD L  G  L D+ELKGFGVR Q     Y ++ RI G+ + LTIG HG PWTP++AR EA RLL  I  G +P  E+ SR+++  T   +A  +L+ H   KLKP T   Y  L+   ++PA G+  + E++T  V + H     TP
Sbjct:    7 KVSLASVDELSTGDTLWDNELKGFGVRCQAKAKSYILKTRINGRQRFLTIGRHGQPWTPKSARIEALRLLGEIAGGKDPVQEKKSRKMM-LTVGELADRFLTEHADKKLKPGTAYHYRSLLTNHVIPALGRHRIEEVSTERVSKLHNSLSSTP 158          
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: UPI0009DDAE5A (site-specific integrase n=1 Tax=Parvularcula oceani TaxID=1247963 RepID=UPI0009DDAE5A)

HSP 1 Score: 112 bits (279), Expect = 2.730e-26
Identity = 68/157 (43.31%), Postives = 95/157 (60.51%), Query Frame = 1
Query:   10 RISKNLVDNLGVGQELRDSELKGFGVRRQEG-VPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERL-IRRQLVPAFGKKTLAEITTVEVERAHTRWKETPRAA 474
            RI+K  VD L  G+   D ELKGFGV+R +G    Y ++ R GG+ + LTIG HGSPWTP+TARKEA  LL  +  G +PA+E+ + R   ATF + A  YL+ H  + K  +    +R  +R  L+PAFG + L +IT  +V + H+   + P AA
Sbjct:   13 RITKRAVDALPAGERRWDGELKGFGVQRTKGGTASYVLKFRAGGRQRWLTIGKHGSPWTPDTARKEAQALLALVAQGKDPATEKLAARD-RATFAAFAERYLAEHAERHKKASSVRDDRANLRNHLLPAFGARALDQITRQDVAKLHSSLADRPVAA 168          
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: E3I768_RHOVT (Integrase family protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) TaxID=648757 RepID=E3I768_RHOVT)

HSP 1 Score: 110 bits (276), Expect = 5.840e-26
Identity = 63/157 (40.13%), Postives = 90/157 (57.32%), Query Frame = 1
Query:    7 MRISKNLVDNLGVGQELRDSELKGFGVRRQ-EGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETPRAA 474
            ++I+   V  L  G  L D ++KGF  +    G   + ++ R+ G+ + +TIG  GSPWT ETAR+EA RLL    +GN+  +E+ ++R     F  VA  ++++H  KLKPRTRE Y  +IR  L PAFG   +A+I    V   H R  ETPR A
Sbjct:    4 IKITLTGVQALSPGSTLWDGQVKGFAAKANANGSVSFVLKTRVNGRQRWVTIGKFGSPWTVETARREALRLLGEAASGNDIGAEKQAKRAKGLLFGHVADQFIAIHFPKLKPRTRESYGTIIRLHLKPAFGATPIADIRKTSVATFHARHAETPRNA 160          
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: A0A1E2RVJ4_9HYPH (Tyrosine recombinase XerD n=1 Tax=Methyloligella halotolerans TaxID=1177755 RepID=A0A1E2RVJ4_9HYPH)

HSP 1 Score: 110 bits (276), Expect = 6.760e-26
Identity = 66/155 (42.58%), Postives = 88/155 (56.77%), Query Frame = 1
Query:   10 RISKNLVDNLGVGQELRDSELKGFGVRRQEGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETPRAA 474
            R+++N +  +  G  L D ELKGFG RRQ     + ++ R+ G+ +  +IG  GSPWT E+AR+EA RLLL+I  G  P S +  +R V  T       +L  HG KLKP T+ EY RL R ++VP  GK  L E    EV R H+    TPR A
Sbjct:    4 RLTRNALKKMTPGDLLWDGELKGFGARRQRETITFCLKCRVRGRQRWYSIGRLGSPWTLESARREALRLLLSIADGEEPVSRKRDKRPV--TVEEGIEQFLDEHGPKLKPSTQAEYTRLCRLKIVPKLGKLKLDEDMRREVGRMHSGMASTPRQA 156          
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Match: A0A6N7AFU2_9PROT (Phage integrase family protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N7AFU2_9PROT)

HSP 1 Score: 110 bits (274), Expect = 1.750e-25
Identity = 66/160 (41.25%), Postives = 94/160 (58.75%), Query Frame = 1
Query:    7 MRISKNLVDNLGVGQELR-----DSELKGFGVR-RQEGVPRYFVQARIGGKLKRLTIGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATDYLSLHGA-KLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWKETP 465
            M+++K  VD+ G  Q+ R     DSE+KGFG+R    GV  Y +  R  G+ +R TIG HGSPWT E AR+ A  LL  I AGN+P   +   +    T T +A  +L+ H A K KPRT  EY RL    ++PA G++T+ +IT +++ R H   ++TP
Sbjct:    1 MKLTKRTVDSAGPAQDGRQLIFWDSEVKGFGLRITPAGVKSYILNYRFAGRERRYTIGKHGSPWTCEEARQTAIALLRDIAAGNDPLEAKAEAKAAP-TMTDLAERFLTEHAATKCKPRTAAEYRRLFDTIILPALGRRTVKDITRMDIARIHHDLRQTP 159          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54513.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8I1G7F4_9HYPH1.560e-3949.36Tyrosine-type recombinase/integrase n=1 Tax=Rhodom... [more]
UPI000930DC185.160e-3847.77site-specific integrase n=1 Tax=Hyphomicrobium sp.... [more]
A0A3S0RGW9_HYPSQ1.030e-3345.16DUF4102 domain-containing protein n=1 Tax=Hyphomic... [more]
A0A1E3W0R1_9HYPH2.450e-2742.58Uncharacterized protein n=2 Tax=Methyloceanibacter... [more]
UPI0007F087731.190e-2641.10site-specific integrase n=3 Tax=Rhizobiaceae TaxID... [more]
UPI001FF62A931.660e-2641.18site-specific integrase n=1 Tax=Aliiroseovarius sp... [more]
UPI0009DDAE5A2.730e-2643.31site-specific integrase n=1 Tax=Parvularcula ocean... [more]
E3I768_RHOVT5.840e-2640.13Integrase family protein n=1 Tax=Rhodomicrobium va... [more]
A0A1E2RVJ4_9HYPH6.760e-2642.58Tyrosine recombinase XerD n=1 Tax=Methyloligella h... [more]
A0A6N7AFU2_9PROT1.750e-2541.25Phage integrase family protein n=1 Tax=Rhodospiril... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54513contigP-wetherbeei_contig54513:56..529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog648757.Rvan_1464
PFAMsArm-DNA-bind_3,Phage_int_SAM_3,Phage_integrase
Model size474
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.94e-27
EggNOG OGsCOG0582@1|root,COG0582@2|Bacteria,1N2H9@1224|Proteobacteria,2TS7K@28211|Alphaproteobacteria,3N6PV@45401|Hyphomicrobiaceae
DescriptionPhage integrase, N-terminal SAM-like domain
Cds size468
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186814.6808467-UTR-P-wetherbeei_contig54513:55..611683186814.6808467-UTR-P-wetherbeei_contig54513:55..61Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54513 56..61 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186814.6912706-CDS-P-wetherbeei_contig54513:61..5291683186814.6912706-CDS-P-wetherbeei_contig54513:61..529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54513 62..529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54513.1.1prot_P-wetherbeei_contig54513.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54513 62..529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54513.1.1

>prot_P-wetherbeei_contig54513.1.1 ID=prot_P-wetherbeei_contig54513.1.1|Name=mRNA_P-wetherbeei_contig54513.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
MRISKNLVDNLGVGQELRDSELKGFGVRRQEGVPRYFVQARIGGKLKRLT
IGIHGSPWTPETARKEAARLLLAIRAGNNPASERDSRRVVDATFTSVATD
YLSLHGAKLKPRTREEYERLIRRQLVPAFGKKTLAEITTVEVERAHTRWK
ETPRAA
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mRNA from alignment at P-wetherbeei_contig54513:56..529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54513.1.1 ID=mRNA_P-wetherbeei_contig54513.1.1|Name=mRNA_P-wetherbeei_contig54513.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig54513:56..529+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTTCATGCGCATTTCCAAGAATCTAGTCGACAATCTGGGGGTCGGCCA GGAGTTGCGGGACAGCGAACTCAAGGGCTTCGGCGTTCGGCGGCAGGAGG GCGTTCCGCGCTACTTCGTGCAAGCGCGCATCGGCGGCAAGCTCAAGCGT CTCACCATCGGCATTCATGGCAGCCCGTGGACGCCGGAGACGGCGCGCAA GGAGGCGGCGCGACTGCTGCTGGCCATTCGGGCCGGCAACAACCCCGCCA GCGAGCGGGACAGCCGCCGCGTAGTCGACGCCACGTTCACGAGCGTCGCC ACCGACTACCTGTCGCTCCACGGCGCCAAACTTAAACCCCGGACCCGCGA GGAATACGAGCGGCTGATCCGGCGCCAGCTTGTGCCTGCATTCGGCAAGA AAACTCTGGCGGAGATCACCACCGTCGAGGTCGAGCGTGCCCATACCCGC TGGAAGGAAACGCCCCGAGCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54513:56..529+

>mRNA_P-wetherbeei_contig54513.1.1 ID=mRNA_P-wetherbeei_contig54513.1.1|Name=mRNA_P-wetherbeei_contig54513.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig54513:56..529+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCATTTCCAAGAATCTAGTCGACAATCTGGGGGTCGGCCAGGAGTT
GCGGGACAGCGAACTCAAGGGCTTCGGCGTTCGGCGGCAGGAGGGCGTTC
CGCGCTACTTCGTGCAAGCGCGCATCGGCGGCAAGCTCAAGCGTCTCACC
ATCGGCATTCATGGCAGCCCGTGGACGCCGGAGACGGCGCGCAAGGAGGC
GGCGCGACTGCTGCTGGCCATTCGGGCCGGCAACAACCCCGCCAGCGAGC
GGGACAGCCGCCGCGTAGTCGACGCCACGTTCACGAGCGTCGCCACCGAC
TACCTGTCGCTCCACGGCGCCAAACTTAAACCCCGGACCCGCGAGGAATA
CGAGCGGCTGATCCGGCGCCAGCTTGTGCCTGCATTCGGCAAGAAAACTC
TGGCGGAGATCACCACCGTCGAGGTCGAGCGTGCCCATACCCGCTGGAAG
GAAACGCCCCGAGCGGCC
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