mRNA_P-wetherbeei_contig54475.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54475.2.1
Unique NamemRNA_P-wetherbeei_contig54475.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54475.2.1 vs. uniprot
Match: A0A2D7FII3_9HYPH (Uncharacterized protein n=1 Tax=Filomicrobium sp. TaxID=2024831 RepID=A0A2D7FII3_9HYPH)

HSP 1 Score: 66.2 bits (160), Expect = 1.370e-12
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    4 SIVLKDVGHPSSAALTAALVVALIFAALTLVPDVTRLVGSVAKGLPLMAYPLIGAVLGYTFKR 192
            ++VLKDVG P+ + L  ALV ALIFA LTL+PDV   +    + +P++AYPLIGAV+GY  KR
Sbjct:   45 ALVLKDVGQPTPSTLVVALVCALIFAGLTLIPDVMSAINGXVR-IPVVAYPLIGAVIGYAIKR 106
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BLAST of mRNA_P-wetherbeei_contig54475.2.1 vs. uniprot
Match: A0A7C2LWY0_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2LWY0_9HYPH)

HSP 1 Score: 52.8 bits (125), Expect = 3.290e-7
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   10 VLKDVGHPSSAALTAALVVALIFAAL-----TLVPDVTRLVGSVAKGLPLMAYPLIGAVLGYTFKR 192
            VL+ VG P++AAL +AL+VALI AAL     TLVPDV        + +P +AYPLIGA++GY  +R
Sbjct:   55 VLRGVGQPTNAALASALIVALIGAALVTWLPTLVPDVR----GPMRAIPDLAYPLIGALIGYHIRR 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54475.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D7FII3_9HYPH1.370e-1255.56Uncharacterized protein n=1 Tax=Filomicrobium sp. ... [more]
A0A7C2LWY0_9HYPH3.290e-751.52Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54475contigP-wetherbeei_contig54475:337..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size195
Hectar predicted targeting categorysignal peptide
Exons1
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186814.081937-CDS-P-wetherbeei_contig54475:336..5311683186814.081937-CDS-P-wetherbeei_contig54475:336..531Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54475 337..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54475.2.1prot_P-wetherbeei_contig54475.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54475 337..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54475.2.1

>prot_P-wetherbeei_contig54475.2.1 ID=prot_P-wetherbeei_contig54475.2.1|Name=mRNA_P-wetherbeei_contig54475.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
ASIVLKDVGHPSSAALTAALVVALIFAALTLVPDVTRLVGSVAKGLPLMA
YPLIGAVLGYTFKR*
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mRNA from alignment at P-wetherbeei_contig54475:337..531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54475.2.1 ID=mRNA_P-wetherbeei_contig54475.2.1|Name=mRNA_P-wetherbeei_contig54475.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig54475:337..531- (Phaeothamnion wetherbeei SAG_119_79)
GCCTCGATTGTCTTGAAGGATGTCGGACATCCCTCCAGTGCCGCGCTGAC
CGCGGCGCTGGTCGTTGCCCTTATTTTTGCGGCGCTGACGCTCGTTCCCG
ACGTGACGCGCCTCGTCGGCAGCGTGGCCAAGGGCTTGCCGTTGATGGCC
TATCCATTGATCGGCGCCGTGCTCGGGTACACGTTCAAGCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54475:337..531-

>mRNA_P-wetherbeei_contig54475.2.1 ID=mRNA_P-wetherbeei_contig54475.2.1|Name=mRNA_P-wetherbeei_contig54475.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig54475:337..531- (Phaeothamnion wetherbeei SAG_119_79)
GCCTCGATTGTCTTGAAGGATGTCGGACATCCCTCCAGTGCCGCGCTGAC
CGCGGCGCTGGTCGTTGCCCTTATTTTTGCGGCGCTGACGCTCGTTCCCG
ACGTGACGCGCCTCGTCGGCAGCGTGGCCAAGGGCTTGCCGTTGATGGCC
TATCCATTGATCGGCGCCGTGCTCGGGTACACGTTCAAGCGTTGA
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