mRNA_P-wetherbeei_contig54468.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54468.1.1
Unique NamemRNA_P-wetherbeei_contig54468.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54468.1.1 vs. uniprot
Match: A0A0S2TG92_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Tenderia electrophaga TaxID=1748243 RepID=A0A0S2TG92_9GAMM)

HSP 1 Score: 59.7 bits (143), Expect = 1.680e-8
Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 1
Query:    1 SNALLAVAVLSNLALSLVIYVLESPLGYALLKAILETAVLFALTYLLLFLMSYGRRLVQTMTALMGSGAVLSGVAFVTMVLTPSLPGDVGV---ALLRGISVLNLLVIAHVLRHALGTWFLVGLLIA 372
            S+AL+ + +L+  A S+ + +L      AL+  + + A++ A+T LLL++   G R  QT TALMG+GA+L  +A   + +   +     +    L+  + V NL V+ H+LRHA+G  F VGLL+A
Sbjct:   24 SSALMLLGMLAYAATSVFVGLLNLSPVVALVSGVFDMALVAAMTQLLLWIRELGARFQQTFTALMGTGAILGLLALPLLYIQLQVGEQAALLPSVLILALVVWNLAVVGHILRHAMGAPFFVGLLLA 150          
BLAST of mRNA_P-wetherbeei_contig54468.1.1 vs. uniprot
Match: A0A3B1A9P2_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1A9P2_9ZZZZ)

HSP 1 Score: 58.2 bits (139), Expect = 6.440e-8
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   40 ALSLVIYVLESPLGYALLKAILETAVLFALTYLLLFLMSYGRRLVQTMTALMGSGAVLSGVAFVTMVLTPSLPGDVGVAL---LRGISVLNLLVIAHVLRHALGT--WFLVGLLIAFGY 381
            A+ L + +LE PLG A+L A+++T +L AL +  L++     R  QT TAL G+G +   V +  +     LP     +L   L G+ + N++VI H+LRHALG   W  +GL + + Y
Sbjct:   37 AIGLAVSLLELPLGLAILSAMVDTLMLAALAWFSLWITGKTPRFTQTYTALAGTGVLFGLVGWPLLTFLQGLPEGQSSSLPLLLLGLVIWNIMVIGHILRHALGIMMWAALGLALFYMY 155          
BLAST of mRNA_P-wetherbeei_contig54468.1.1 vs. uniprot
Match: A0A7C5JDL3_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C5JDL3_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 1.300e-6
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = 1
Query:   43 LSLVIYVLESPLGYALLKAILETAVLFALTYLLLFLMSYGRRLVQTMTALMGSGAVLSGVAFVTMVLTPSLPGDVGVAL---LRGISVLNLLVIAHVLRHALGT--WFLVGLLIAFGY 381
            + L + +LE P G A+L A ++T +L AL +L L+++    R  QT TAL G G +   + +  +     LP   G +L   L G+ + N++VI H+LRHALG   W   GL + + Y
Sbjct:   38 IGLAVSLLEQPPGLAILSAAVDTLMLAALAWLSLWIIGKTARFTQTYTALAGIGILFGLMGWPLVAFLQGLPQGQGSSLSLLLLGLVIWNIVVIGHILRHALGLMMWAASGLALFYVY 155          
BLAST of mRNA_P-wetherbeei_contig54468.1.1 vs. uniprot
Match: A0A3M0Z2W8_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M0Z2W8_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 1.950e-6
Identity = 50/134 (37.31%), Postives = 77/134 (57.46%), Query Frame = 1
Query:    1 SNALLAVAVLSNLALSLVIYVLESPLGYALLKAILETAVLFALTYLLLFLMSYGRRLVQTMTALMGSGAVLSGVAFVTMVLTPSLPGDVGVA-----LLRGISVLNLLVIAHVLRHALGTWFL--VGLLIAFGY 381
            S  L A+A  + L +  ++ ++  P G A L ++L+T +L  L  ++L++   GRR +QT TAL GSGAVL G+  + ++L     G    A     LL   +V  L+V+AH+LRHALG  F+  VGL + + Y
Sbjct:   28 SPLLAALATAAYLLVGWLLGLVRLPAGQAFLASLLDTLLLAVLARIVLWVRDLGRRFLQTYTALAGSGAVL-GLVILPVLLWEGRGGTGEAAALLPLLLLAWTVWGLVVMAHILRHALGIRFVTAVGLSLVYLY 160          
BLAST of mRNA_P-wetherbeei_contig54468.1.1 vs. uniprot
Match: A0A836TWD3_9GAMM (Uncharacterized protein n=1 Tax=Thiotrichaceae bacterium TaxID=2030882 RepID=A0A836TWD3_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 1.540e-5
Identity = 43/136 (31.62%), Postives = 76/136 (55.88%), Query Frame = 1
Query:    1 SNALLAVAVLSNLALSLVIYVLESPLGYALLKAILETAVLFALTYLLLFLMSYGRRLVQTMTALMGSGAVLSGVAFVTMVLT--------PSLPGD-VGVALLRGISVLNLLVIAHVLRHALGTWFLVGLLIAFGY 381
            S  LL + V+   +LS+++  L  PL  A+L  +LE A++   +  +L +     R  QT+TAL+G+G ++S +AF   +L          S  G  +G+ LL  ++  N+ ++AH+LRHAL   F++ +++A  Y
Sbjct:   28 SKDLLTLCVVVYGSLSILLESLSLPLEKAILAGVLEVALIMIFSLAVLQIRGKSSRWTQTVTALVGTGIIISIIAFPVYILIGVGELGEFESNSGQSIGLLLLVALACWNIAIMAHILRHALEVNFMLAVILAITY 163          
BLAST of mRNA_P-wetherbeei_contig54468.1.1 vs. uniprot
Match: A0A1G0G206_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium RBG_16_51_14 TaxID=1798265 RepID=A0A1G0G206_9GAMM)

HSP 1 Score: 51.6 bits (122), Expect = 2.040e-5
Identity = 43/132 (32.58%), Postives = 73/132 (55.30%), Query Frame = 1
Query:    1 SNALLAVAVLSNLALSLVIYVLESPLGYALLKAILETAVLFALTYLLLFLMSYGRRLVQTMTALMGSGAVLSGVAFVTMVLTPSLPGD-----VGVALLRGISVLNLLVIAHVLRHALGTWFLVGLLIAFGY 381
            SN LL+++V   +  S ++ +L + +  A L  ++E  ++   TY LL   +   R  QT+TAL G+G V+S +A     L  SL  +     +G+ LL  + + N+ ++AH+ RHAL T   +G++IA  Y
Sbjct:   28 SNVLLSLSVAGYILASAMLALLSAQIVNATLAGVIEALLVMVFTYGLLQFGNKTERWSQTVTALAGTGIVISLIALPLYYLGSSLGQEGTGQSIGLLLLIVLIIWNIAIMAHIFRHALQTTIGLGIIIAISY 159          
BLAST of mRNA_P-wetherbeei_contig54468.1.1 vs. uniprot
Match: A0A7C5XST6_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C5XST6_9GAMM)

HSP 1 Score: 50.4 bits (119), Expect = 5.070e-5
Identity = 45/108 (41.67%), Postives = 60/108 (55.56%), Query Frame = 1
Query:   85 ALLKAILETAVLFALTYLLLFLMSYGRRLVQTMTALMGSGAVLSGVAFVTMV-------LTPSLPGDVGVALLRGISVLNLLVIAHVLRHALGTWFLVGLLIAFGYAL 387
            AL + IL+ A+L A  + LL L  +  R +QT TAL G+GA+L  +A+  M        L   +P  +GVALL G+    LLVIAH+LRHAL    L    +A  Y L
Sbjct:   52 ALAEGILDAAMLAAFAWGLLRLRGWPNRFLQTYTALTGTGALLGLLAWAPMAAAWRAEQLGGEVPAVLGVALL-GLVAWTLLVIAHILRHALELPLLATTAMALAYVL 158          
BLAST of mRNA_P-wetherbeei_contig54468.1.1 vs. uniprot
Match: A0A2N6GNA5_9GAMM (Uncharacterized protein n=1 Tax=Sedimenticola sp. TaxID=1940285 RepID=A0A2N6GNA5_9GAMM)

HSP 1 Score: 50.4 bits (119), Expect = 5.530e-5
Identity = 50/137 (36.50%), Postives = 77/137 (56.20%), Query Frame = 1
Query:   10 LLAVAVLSNLALSLVIYVLESPLGYALLKAILETAVLFALTYLLLFL---MSYGR---RLVQTMTALMGSGAVLSGVAFVTMVLTPSLP-----GDVGVALLRGISVLNLLVIAHVLRHALGTWFLVGLLIAFGYAL 387
            L+  AVL  +  ++V+Y      G AL+  +L+ A      ++LLFL   +SY R   RL+Q+ TA+ GSG V++ V+    +L  + P     G++GV L   + V  ++VIAH+LRHA    F+ G L+A GY L
Sbjct:   34 LVLTAVLGVITGTVVLYDSFGDAGQALMAQLLDLA------FMLLFLRLGLSYRRKEARLLQSATAVFGSGVVMNLVSMPVQLLIGNDPAGSVLGELGVLLYLFLLVWVIVVIAHILRHAFEIKFVAGSLLAIGYFL 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54468.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A0S2TG92_9GAMM1.680e-835.43Uncharacterized protein n=1 Tax=Candidatus Tenderi... [more]
A0A3B1A9P2_9ZZZZ6.440e-836.13Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A7C5JDL3_9GAMM1.300e-635.59Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A3M0Z2W8_9GAMM1.950e-637.31Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A836TWD3_9GAMM1.540e-531.62Uncharacterized protein n=1 Tax=Thiotrichaceae bac... [more]
A0A1G0G206_9GAMM2.040e-532.58Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A7C5XST6_9GAMM5.070e-541.67Uncharacterized protein n=1 Tax=Chromatiales bacte... [more]
A0A2N6GNA5_9GAMM5.530e-536.50Uncharacterized protein n=1 Tax=Sedimenticola sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54468contigP-wetherbeei_contig54468:3..392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog105559.Nwat_2194
Model size390
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.63e-07
EggNOG OGs2952G@1|root,2ZSF9@2|Bacteria,1NFKJ@1224|Proteobacteria,1SDRS@1236|Gammaproteobacteria
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186814.0530846-CDS-P-wetherbeei_contig54468:2..3921683186814.0530846-CDS-P-wetherbeei_contig54468:2..392Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54468 3..392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54468.1.1prot_P-wetherbeei_contig54468.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54468 3..392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54468.1.1

>prot_P-wetherbeei_contig54468.1.1 ID=prot_P-wetherbeei_contig54468.1.1|Name=mRNA_P-wetherbeei_contig54468.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
SNALLAVAVLSNLALSLVIYVLESPLGYALLKAILETAVLFALTYLLLFL
MSYGRRLVQTMTALMGSGAVLSGVAFVTMVLTPSLPGDVGVALLRGISVL
NLLVIAHVLRHALGTWFLVGLLIAFGYALL
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mRNA from alignment at P-wetherbeei_contig54468:3..392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54468.1.1 ID=mRNA_P-wetherbeei_contig54468.1.1|Name=mRNA_P-wetherbeei_contig54468.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig54468:3..392+ (Phaeothamnion wetherbeei SAG_119_79)
TCGAACGCCCTGCTGGCAGTGGCAGTGCTGAGTAATCTGGCCTTGTCGCT GGTCATCTATGTGCTTGAATCGCCGTTGGGCTATGCCCTGCTGAAAGCCA TACTTGAGACAGCGGTATTATTTGCACTCACCTACCTGCTGCTGTTTCTG ATGTCCTACGGCCGGCGCCTGGTACAAACCATGACCGCTTTGATGGGCAG TGGCGCAGTGCTGAGTGGCGTTGCCTTCGTCACCATGGTGCTGACGCCAA GTCTGCCGGGCGATGTCGGGGTGGCCTTGCTGCGTGGCATTTCAGTCCTC AACCTGCTGGTCATCGCGCACGTGCTGCGCCATGCACTCGGCACCTGGTT TCTGGTCGGGCTGTTGATCGCTTTCGGCTACGCCTTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54468:3..392+

>mRNA_P-wetherbeei_contig54468.1.1 ID=mRNA_P-wetherbeei_contig54468.1.1|Name=mRNA_P-wetherbeei_contig54468.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig54468:3..392+ (Phaeothamnion wetherbeei SAG_119_79)
TCGAACGCCCTGCTGGCAGTGGCAGTGCTGAGTAATCTGGCCTTGTCGCT
GGTCATCTATGTGCTTGAATCGCCGTTGGGCTATGCCCTGCTGAAAGCCA
TACTTGAGACAGCGGTATTATTTGCACTCACCTACCTGCTGCTGTTTCTG
ATGTCCTACGGCCGGCGCCTGGTACAAACCATGACCGCTTTGATGGGCAG
TGGCGCAGTGCTGAGTGGCGTTGCCTTCGTCACCATGGTGCTGACGCCAA
GTCTGCCGGGCGATGTCGGGGTGGCCTTGCTGCGTGGCATTTCAGTCCTC
AACCTGCTGGTCATCGCGCACGTGCTGCGCCATGCACTCGGCACCTGGTT
TCTGGTCGGGCTGTTGATCGCTTTCGGCTACGCCTTGCTG
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