mRNA_P-wetherbeei_contig54467.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54467.1.1
Unique NamemRNA_P-wetherbeei_contig54467.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54467.1.1 vs. uniprot
Match: W3RM49_9BRAD (Uncharacterized protein n=2 Tax=Afipia sp. P52-10 TaxID=1429916 RepID=W3RM49_9BRAD)

HSP 1 Score: 67.0 bits (162), Expect = 8.290e-12
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    7 LASIAALVVTSFDAHAAPAAAQSAGATGQQLAPAGSTDFGARKRWRARRGNPAAGLAMMGMMIGAVGGVIAAQQRREAYEGAYARRVY 270
            LA I AL   SF+A A+ A A  A A G+  + A    + ARKR R RRG+ AAGLAMMG MIG +G VIAA++RR+AYE AY  R Y
Sbjct:   12 LALIVALAAASFEAEASSAVAAPA-AGGRVASAADDIAYSARKRSRVRRGD-AAGLAMMGAMIGTIGAVIAAERRRDAYEEAYRARYY 97
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BLAST of mRNA_P-wetherbeei_contig54467.1.1 vs. uniprot
Match: UPI0019547404 (hypothetical protein n=1 Tax=Enterobacter hormaechei TaxID=158836 RepID=UPI0019547404)

HSP 1 Score: 59.3 bits (142), Expect = 2.470e-9
Identity = 42/81 (51.85%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:   31 VTSFDAHAAPAAAQSAGATGQQLAPAGST-DFGARKRWRARRGNPAAGLAMMGMMIGAVGGVIAAQQRREAYEGAYARRVY 270
            +TSFDA AA  AA    A  Q ++PA +   F ARK       N AAGLAMMG+MIG +G VIAA++RR+AY  AY  R Y
Sbjct:    2 MTSFDARAASPAAP---AKQQSVSPADADIAFSARKXXXXXXHNHAAGLAMMGLMIGTIGAVIAAERRRDAYRDAYNARYY 79
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BLAST of mRNA_P-wetherbeei_contig54467.1.1 vs. uniprot
Match: UPI001E29434D (hypothetical protein n=1 Tax=Bradyrhizobium sp. A19 TaxID=2898149 RepID=UPI001E29434D)

HSP 1 Score: 52.0 bits (123), Expect = 6.070e-6
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    1 LLLASIAALVVTSFDAHAAPAAAQSAGATGQQL----APAGSTDFGARKRWR-ARRGNPAAGLAMMGMMIGAVGGVIAAQQRREAYEG 249
            ++LA +AA+VV + +   APA A++AG  G+Q     A    TD  AR+R+R   RGNPAAGLA+MG MIG +G + A Q   + Y G
Sbjct:   15 IVLAGVAAMVVAASEP--APAFARAAGQAGKQAVIKTAAGDVTDLSARRRYRRVYRGNPAAGLAIMGAMIGTIGAIAAHQHDDDYYYG 100
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54467.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
W3RM49_9BRAD8.290e-1254.55Uncharacterized protein n=2 Tax=Afipia sp. P52-10 ... [more]
UPI00195474042.470e-951.85hypothetical protein n=1 Tax=Enterobacter hormaech... [more]
UPI001E29434D6.070e-645.45hypothetical protein n=1 Tax=Bradyrhizobium sp. A1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54467contigP-wetherbeei_contig54467:2..349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1038866.KB902796_gene7344
Model size348
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.86e-07
EggNOG OGs2AG3P@1|root,31689@2|Bacteria,1RHTU@1224|Proteobacteria,2UA06@28211|Alphaproteobacteria,3JZQC@41294|Bradyrhizobiaceae
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186814.0058968-CDS-P-wetherbeei_contig54467:1..3491683186814.0058968-CDS-P-wetherbeei_contig54467:1..349Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54467 2..349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54467.1.1prot_P-wetherbeei_contig54467.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54467 2..349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54467.1.1

>prot_P-wetherbeei_contig54467.1.1 ID=prot_P-wetherbeei_contig54467.1.1|Name=mRNA_P-wetherbeei_contig54467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
LLLASIAALVVTSFDAHAAPAAAQSAGATGQQLAPAGSTDFGARKRWRAR
RGNPAAGLAMMGMMIGAVGGVIAAQQRREAYEGAYARRVYPAYGGGGYAY
GHPQPYVTHQPQVYHQ
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mRNA from alignment at P-wetherbeei_contig54467:2..349+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54467.1.1 ID=mRNA_P-wetherbeei_contig54467.1.1|Name=mRNA_P-wetherbeei_contig54467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig54467:2..349+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGCTGGCGTCGATCGCGGCGCTGGTCGTGACCTCGTTCGATGCGCA
TGCGGCGCCTGCCGCCGCGCAGTCTGCCGGCGCGACCGGCCAGCAGCTGG
CGCCGGCCGGCAGCACCGACTTCGGCGCGCGCAAGCGCTGGCGTGCAAGG
CGCGGCAATCCCGCGGCCGGGCTTGCAATGATGGGTATGATGATCGGCGC
TGTCGGCGGGGTGATTGCCGCCCAGCAGCGGCGCGAAGCCTACGAGGGAG
CCTACGCCCGGCGGGTCTACCCGGCCTACGGCGGCGGTGGCTATGCGTAC
GGCCATCCGCAGCCTTACGTCACTCATCAGCCGCAGGTCTATCACCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54467:2..349+

>mRNA_P-wetherbeei_contig54467.1.1 ID=mRNA_P-wetherbeei_contig54467.1.1|Name=mRNA_P-wetherbeei_contig54467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig54467:2..349+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGCTGGCGTCGATCGCGGCGCTGGTCGTGACCTCGTTCGATGCGCA
TGCGGCGCCTGCCGCCGCGCAGTCTGCCGGCGCGACCGGCCAGCAGCTGG
CGCCGGCCGGCAGCACCGACTTCGGCGCGCGCAAGCGCTGGCGTGCAAGG
CGCGGCAATCCCGCGGCCGGGCTTGCAATGATGGGTATGATGATCGGCGC
TGTCGGCGGGGTGATTGCCGCCCAGCAGCGGCGCGAAGCCTACGAGGGAG
CCTACGCCCGGCGGGTCTACCCGGCCTACGGCGGCGGTGGCTATGCGTAC
GGCCATCCGCAGCCTTACGTCACTCATCAGCCGCAGGTCTATCACCAG
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