mRNA_P-wetherbeei_contig5443.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5443.1.1
Unique NamemRNA_P-wetherbeei_contig5443.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5443.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5443contigP-wetherbeei_contig5443:580..1948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1145
Hectar predicted targeting categoryother localisation
Exons2
Cds size954
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.376655-UTR-P-wetherbeei_contig5443:579..7461683186813.376655-UTR-P-wetherbeei_contig5443:579..746Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5443 580..746 +
1683186813.4178786-UTR-P-wetherbeei_contig5443:1924..19481683186813.4178786-UTR-P-wetherbeei_contig5443:1924..1948Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5443 1925..1948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.3948765-CDS-P-wetherbeei_contig5443:746..10351683186813.3948765-CDS-P-wetherbeei_contig5443:746..1035Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5443 747..1035 +
1683186813.4081724-CDS-P-wetherbeei_contig5443:1259..19241683186813.4081724-CDS-P-wetherbeei_contig5443:1259..1924Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5443 1260..1924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5443.1.1prot_P-wetherbeei_contig5443.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5443 747..1924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5443.1.1

>prot_P-wetherbeei_contig5443.1.1 ID=prot_P-wetherbeei_contig5443.1.1|Name=mRNA_P-wetherbeei_contig5443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=318bp
MMPAAAAAAAAAGTASPLPAPHGRVRDELAENLAPPSPGTAQRERRESMQ
VNLICAAAEAEAGDSPDFGRRLRCRRCGGTVEGPRLSTCSCRVPQLGEED
DSGEDEEKAARLRRLLFKVASNLRENANPSRLGSLYNSIDGKLTSLATGG
VGAGAGGGAGVGGGSVGAGGGGRVGNGSGGGVGGAEEARLGISSLSLSLP
PSVSISASAESGDGRGTGSSAGSHTASALMDGTPALDNAFSPAYGVNGSP
AAAAAAERFLDGRAGSGVAAAAAAGSVLARGRDLLDSMRWGLNSPPTRGS
IDPTAAAAAAASEAWPV*
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mRNA from alignment at P-wetherbeei_contig5443:580..1948+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5443.1.1 ID=mRNA_P-wetherbeei_contig5443.1.1|Name=mRNA_P-wetherbeei_contig5443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1369bp|location=Sequence derived from alignment at P-wetherbeei_contig5443:580..1948+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCGGCGCGGCGGGGCTCCGCAACTTCGTCCGCCGCCGCTGCCGACTTC
GCCGTCAGCCCGGCGTCGGCGTCTGGAACGTCGGCTTCCGCCGCGGTGAC
GCCGTCTGCTTCCGTCGCAGTGACACCGTCGGCGGCCCGAACGCCGGCGG
CGGCGTCGCCAGCAGCGATGATGCCAGCAGCAGCGGCGGCGGCAGCGGCC
GCCGGTACGGCGTCTCCGCTGCCCGCGCCCCACGGGCGCGTTCGCGACGA
GCTGGCAGAGAACCTGGCGCCGCCGAGCCCTGGGACGGCGCAGCGGGAAC
GGAGGGAGTCAATGCAGGTGAACCTGATCTGCGCCGCTGCCGAGGCCGAG
GCGGGCGACTCGCCCGATTTCGGGCGACGGTTGCGATGTCGGCGCTGCGG
CGGGACCGTGGAGGGCCCGCGGCTGAGCACATGCTCCTGCCGCGTCCCGC
AGCTCGGTACGTGAGAATTTGTCGTTGTTTCCGTTGTTGTGTGTTCTTGA
CCTGAAATGAGAAGTTGGCGAGGGAGTGCCTGCCGCGCTGAAATCGTGTC
ACCGTTGGAATCGTATCTTATCTTTCATCTTCTTTGAGCTTGCGCTTTCT
TCATAAACAGCCAACTTGACCACTGTTTTCGCATCATGCCTTATACCACC
GATTGTTTCTCTGTTGACTCGACGAAACAGGCGAGGAGGACGATAGCGGT
GAGGACGAGGAGAAGGCGGCGCGACTGCGGCGGCTGCTCTTCAAAGTGGC
CTCCAACCTGCGGGAGAATGCCAACCCGTCCCGCCTCGGTTCGTTGTACA
ATAGCATCGACGGCAAGCTGACCAGCCTCGCCACCGGCGGTGTCGGCGCC
GGCGCCGGCGGCGGCGCTGGCGTTGGCGGCGGCAGTGTCGGCGCTGGCGG
TGGCGGCCGCGTTGGCAACGGCAGCGGCGGTGGTGTTGGTGGTGCGGAGG
AGGCGCGACTGGGAATTTCGTCGCTGTCGCTGTCGCTGCCGCCATCAGTT
TCCATCTCCGCTTCAGCCGAATCGGGAGATGGACGAGGCACCGGCTCCAG
TGCTGGCTCCCACACCGCGTCTGCCTTGATGGATGGGACGCCAGCGCTGG
ATAATGCTTTCTCGCCGGCGTACGGCGTCAATGGCAGCCCGGCGGCAGCG
GCCGCTGCTGAGCGGTTCCTTGACGGCCGCGCAGGAAGCGGGGTCGCGGC
GGCAGCGGCAGCTGGCAGCGTCCTTGCGCGCGGCCGGGATCTGCTGGACT
CGATGCGATGGGGGCTGAACTCGCCGCCCACGCGCGGCAGCATCGACCCG
ACGGCTGCGGCTGCAGCGGCTGCGAGCGAGGCGTGGCCCGTGTGAATAAT
TTACTTTCCTTTTACGTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5443:580..1948+

>mRNA_P-wetherbeei_contig5443.1.1 ID=mRNA_P-wetherbeei_contig5443.1.1|Name=mRNA_P-wetherbeei_contig5443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=954bp|location=Sequence derived from alignment at P-wetherbeei_contig5443:580..1948+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCCAGCAGCAGCGGCGGCGGCAGCGGCCGCCGGTACGGCGTCTCC
GCTGCCCGCGCCCCACGGGCGCGTTCGCGACGAGCTGGCAGAGAACCTGG
CGCCGCCGAGCCCTGGGACGGCGCAGCGGGAACGGAGGGAGTCAATGCAG
GTGAACCTGATCTGCGCCGCTGCCGAGGCCGAGGCGGGCGACTCGCCCGA
TTTCGGGCGACGGTTGCGATGTCGGCGCTGCGGCGGGACCGTGGAGGGCC
CGCGGCTGAGCACATGCTCCTGCCGCGTCCCGCAGCTCGGCGAGGAGGAC
GATAGCGGTGAGGACGAGGAGAAGGCGGCGCGACTGCGGCGGCTGCTCTT
CAAAGTGGCCTCCAACCTGCGGGAGAATGCCAACCCGTCCCGCCTCGGTT
CGTTGTACAATAGCATCGACGGCAAGCTGACCAGCCTCGCCACCGGCGGT
GTCGGCGCCGGCGCCGGCGGCGGCGCTGGCGTTGGCGGCGGCAGTGTCGG
CGCTGGCGGTGGCGGCCGCGTTGGCAACGGCAGCGGCGGTGGTGTTGGTG
GTGCGGAGGAGGCGCGACTGGGAATTTCGTCGCTGTCGCTGTCGCTGCCG
CCATCAGTTTCCATCTCCGCTTCAGCCGAATCGGGAGATGGACGAGGCAC
CGGCTCCAGTGCTGGCTCCCACACCGCGTCTGCCTTGATGGATGGGACGC
CAGCGCTGGATAATGCTTTCTCGCCGGCGTACGGCGTCAATGGCAGCCCG
GCGGCAGCGGCCGCTGCTGAGCGGTTCCTTGACGGCCGCGCAGGAAGCGG
GGTCGCGGCGGCAGCGGCAGCTGGCAGCGTCCTTGCGCGCGGCCGGGATC
TGCTGGACTCGATGCGATGGGGGCTGAACTCGCCGCCCACGCGCGGCAGC
ATCGACCCGACGGCTGCGGCTGCAGCGGCTGCGAGCGAGGCGTGGCCCGT
GTGA
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