mRNA_P-wetherbeei_contig54408.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54408.1.1
Unique NamemRNA_P-wetherbeei_contig54408.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54408.1.1 vs. uniprot
Match: Q0AIY8_NITEC (Putative lipoprotein n=3 Tax=Nitrosomonadaceae TaxID=206379 RepID=Q0AIY8_NITEC)

HSP 1 Score: 52.8 bits (125), Expect = 1.990e-6
Identity = 29/80 (36.25%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:    1 MKNIIVVPLVALALSACSLGPEKKDAAATYDLGAPQGAA-ASQPRIKASVLVHAVAAPSWLESNFIVYRLHYHDGARQLT 237
            M   + + L+A+ L+ C+L P+   + + YDLG P      S    +A++ +  +AAP WL++  I YRL YHD AR  T
Sbjct:    1 MMTKVSIALLAILLTGCTLTPKAPSSVSVYDLGPPSAITLGSSLSSQATIQIIDIAAPVWLDTQSIHYRLAYHDPARIYT 80
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54408.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q0AIY8_NITEC1.990e-636.25Putative lipoprotein n=3 Tax=Nitrosomonadaceae Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54408contigP-wetherbeei_contig54408:295..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog335283.Neut_0405
PFAMsABC_trans_aux
Model size237
Max annot lvl28216|Betaproteobacteria
KEGG koko:K18480
KEGG TC3.A.1.27.1
KEGG ModuleM00669
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.27e-07
EggNOG OGsCOG3218@1|root,COG3218@2|Bacteria,1N8NT@1224|Proteobacteria,2VTC7@28216|Betaproteobacteria,3734P@32003|Nitrosomonadales
DescriptionABC-type transport auxiliary lipoprotein component
Cds size237
COG categoryS
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.1247618-CDS-P-wetherbeei_contig54408:294..5311683186813.1247618-CDS-P-wetherbeei_contig54408:294..531Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54408 295..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54408.1.1prot_P-wetherbeei_contig54408.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54408 295..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54408.1.1

>prot_P-wetherbeei_contig54408.1.1 ID=prot_P-wetherbeei_contig54408.1.1|Name=mRNA_P-wetherbeei_contig54408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
MKNIIVVPLVALALSACSLGPEKKDAAATYDLGAPQGAAASQPRIKASVL
VHAVAAPSWLESNFIVYRLHYHDGARQLT
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mRNA from alignment at P-wetherbeei_contig54408:295..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54408.1.1 ID=mRNA_P-wetherbeei_contig54408.1.1|Name=mRNA_P-wetherbeei_contig54408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig54408:295..531+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAATATCATCGTAGTACCGCTAGTGGCGCTGGCCCTCAGCGCGTG
TTCGCTGGGGCCGGAGAAAAAGGACGCCGCCGCGACCTATGATCTCGGCG
CACCGCAGGGTGCGGCCGCCAGCCAGCCGCGCATCAAGGCAAGCGTGCTG
GTGCATGCGGTCGCCGCGCCGAGCTGGCTCGAATCTAATTTCATCGTGTA
CCGGCTGCACTACCACGATGGCGCGCGGCAGCTCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54408:295..531+

>mRNA_P-wetherbeei_contig54408.1.1 ID=mRNA_P-wetherbeei_contig54408.1.1|Name=mRNA_P-wetherbeei_contig54408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig54408:295..531+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAATATCATCGTAGTACCGCTAGTGGCGCTGGCCCTCAGCGCGTG
TTCGCTGGGGCCGGAGAAAAAGGACGCCGCCGCGACCTATGATCTCGGCG
CACCGCAGGGTGCGGCCGCCAGCCAGCCGCGCATCAAGGCAAGCGTGCTG
GTGCATGCGGTCGCCGCGCCGAGCTGGCTCGAATCTAATTTCATCGTGTA
CCGGCTGCACTACCACGATGGCGCGCGGCAGCTCACC
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