mRNA_P-wetherbeei_contig54406.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54406.1.1
Unique NamemRNA_P-wetherbeei_contig54406.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54406.1.1 vs. uniprot
Match: A0A2U7P3D0_9VIRU (Putative capsid protein n=1 Tax=Hot spring virus BHS1 TaxID=2024351 RepID=A0A2U7P3D0_9VIRU)

HSP 1 Score: 139 bits (350), Expect = 8.840e-37
Identity = 82/165 (49.70%), Postives = 103/165 (62.42%), Query Frame = 1
Query:   19 NTAPN-AVKTGGSYSVAYPIRDKAVASAISFVAYAKMTVRDYAKHLTSIFNGDRAEVGKEILRRIFNNAATTFGDDLYGDLTVQPLANGDAIKYPPVAGSEVEATANNYLVSNYLASAIDNTNNPYATISDLLESYFGGARTGGSPVVIFISKSQEFVTRGLAGF 510
            N AP+ AVKT GS+ V YP+       A + +  + MTV+D  +HL +IF  D   V  E+LR + NN A TF D ++G LTVQPLANGDA+ YPPV GSE EAT N+Y  + Y  SAI + N+PY TI D LE +FG A TGGS +V FI+ S    T  L  F
Sbjct:   73 NQAPSGAVKTVGSWDVGYPLEGFGATLAGNRIDMSYMTVQDLDRHLDTIFFMDTNTVRYEMLRALLNNTARTFVDPIWGSLTVQPLANGDAVNYPPVLGSENEATENHYYGTGYTESAISDANDPYITIRDELEEHFG-APTGGSNIVAFINNSTTPKTLALTKF 236          
BLAST of mRNA_P-wetherbeei_contig54406.1.1 vs. uniprot
Match: A0A0S8I6C2_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium SM23_ 63 TaxID=1703387 RepID=A0A0S8I6C2_9CHLR)

HSP 1 Score: 137 bits (344), Expect = 6.650e-36
Identity = 76/161 (47.20%), Postives = 101/161 (62.73%), Query Frame = 1
Query:   37 VKTGGSYSVAYPIRDKAVASAISFVAYAKMTVRDYAKHLTSIFNGDRAEVGKEILRRIFNNAATTFGDDLYGDLTVQPLANGDAIKYPPVAGSEVEATANNYLVSNYLASAIDNTNNPYATISDLLESYFGGARTGGSPVVIFISKSQEFVTRGLAGFVAV 519
            VK  GS+ VA P+ D   A     V  A M++++Y +HL +I   D   V  E+L  +F+ A  TF D LYG LTVQPLANGD + YPPV G+E EAT ++YL++ Y A+AID+TNNPY TI   LE +FG A TGG  V +FI+ ++   T  L  + AV
Sbjct:   80 VKAYGSWDVALPLEDFGAAIGGDDVTLAYMSIQEYDRHLKTIMIQDINTVRFELLYSLFHGATRTFVDPLYGSLTVQPLANGDTVTYPPVLGAEAEATDDHYLIAGYAATAIDDTNNPYITIRQELEEHFG-ASTGGDAVAVFINPAESPETEDLTDYDAV 239          
BLAST of mRNA_P-wetherbeei_contig54406.1.1 vs. uniprot
Match: A0A5C7PGI0_9DELT (Uncharacterized protein n=1 Tax=Desulfurellales bacterium TaxID=2482794 RepID=A0A5C7PGI0_9DELT)

HSP 1 Score: 131 bits (329), Expect = 1.080e-33
Identity = 77/170 (45.29%), Postives = 100/170 (58.82%), Query Frame = 1
Query:    1 FEEMDENTAPNAVKTGGSYSVAYPIRDKAVASAISFVAYAKMTVRDYAKHLTSIFNGDRAEVGKEILRRIFNNAATTFGDDLYGDLTVQPLANGDAIKYPPVAGSEVEATANNYLVSNYLASAIDNTNNPYATISDLLESYFGGARTGGSPVVIFISKSQEFVTRGLAGF 510
             ++   N +  AV+  G ++ AYP++D     A   V  A MTV D    L +I   +      E+LR +FNNA  TF DD  GDLT+ PLANGD++ YPPV GSE EAT N+YL SNY AS I +TNNPY TI D LE +FG A +G   + +FI+ +Q   T  L  F
Sbjct:   68 MQQRGRNASNAAVRGYGGWNAAYPLKDFEEPVASDDVTLAYMTVEDVQIALDTIQIRNINTFRYEMLRVLFNNAQYTFPDDRNGDLTILPLANGDSVVYPPVMGSESEATENHYLESNYAASGISDTNNPYVTIRDELEEHFG-APSGFGSIAVFINTAQTAKTEDLTDF 236          
BLAST of mRNA_P-wetherbeei_contig54406.1.1 vs. uniprot
Match: A0A0F9D0T4_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9D0T4_9ZZZZ)

HSP 1 Score: 129 bits (325), Expect = 4.240e-33
Identity = 65/170 (38.24%), Postives = 105/170 (61.76%), Query Frame = 1
Query:    1 FEEMDENTAPNAVKTGGSYSVAYPIRDKAVASAISFVAYAKMTVRDYAKHLTSIFNGDRAEVGKEILRRIFNNAATTFGDDLYGDLTVQPLANGDAIKYPPVAGSEVEATANNYLVSNYLASAIDNTNNPYATISDLLESYFGGARTGGSPVVIFISKSQEFVTRGLAGF 510
             E   +     AV+T GSY VAYP+ D     A + +  A MT++D  +HL S+F  D   +  E+L+ +FNN   TF D+L+G L+++PLANGD++ YPPV G+   AT ++YL + YL+SA+ + NNP  T+ D +E +FG  + GG+ +++F++K++      L  +
Sbjct:   68 MERRGKQATTGAVQTVGSYDVAYPLEDFGAQIAGTDIDLAYMTLQDLNRHLNSVFTRDANTLRFEMLKAMFNNNQDTFVDELHGSLSIEPLANGDSVVYPPVIGASSGATDDHYLEAGYLSSAVSDDNNPLITLKDEIEEHFGVPQGGGN-MIVFVAKAERSXIEDLTDY 236          
BLAST of mRNA_P-wetherbeei_contig54406.1.1 vs. uniprot
Match: A0A0F9LL21_9ZZZZ (Uncharacterized protein n=3 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9LL21_9ZZZZ)

HSP 1 Score: 119 bits (297), Expect = 5.400e-29
Identity = 64/158 (40.51%), Postives = 95/158 (60.13%), Query Frame = 1
Query:   37 VKTGGSYSVAYPIRDKAVASAISFVAYAKMTVRDYAKHLTSIFNGDRAEVGKEILRRIFNNAATTFGDDLYGDLTVQPLANGDAIKYPPVAGSEVEATANNYLVSNYLASAIDNTNNPYATISDLLESYFGGARTGGSPVVIFISKSQEFVTRGLAGF 510
            VKT G Y VAYP+ +     +++ V  A MTV D  +H+T +   +   V +E+L  +F ++  TF D  +G L+++PLANGD + YPPV GS  EAT ++YL SN+ A+ I +TNNP+ TI D L  ++ G  T  + V +FI+  Q  VT  L  +
Sbjct:   82 VKTFGGYDVAYPLTEFGAQVSMTRVVEAYMTVDDLDRHVTGVVERNVRTVRQELLEALFFSSQDTFVDIKWGSLSIEPLANGDTVTYPPVVGSGTEATEDHYLESNFTAANISDTNNPFVTIRDDLVHHYNGTTTD-NEVAVFINSDQLAVTEALTDY 238          
BLAST of mRNA_P-wetherbeei_contig54406.1.1 vs. uniprot
Match: A0A257AW68_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Chloracidobacterium sp. CP2_5A TaxID=2012633 RepID=A0A257AW68_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 1.480e-18
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 1
Query:   34 AVKTGGSYSVAYPIRDKAVASAISFVAYAKMTVRDYAKHLTSIFNGDRAEVGKEILRRIFNNAATTFGDDLYGDLTVQPLANGDAIKYPPVAG 312
            AVK GG + VAYP+ D         V+ A MT  +  +H+ ++   ++  V  E+L+R+FNNAA+TF D  YG LT+QPLANGD++ YPPV G
Sbjct:   79 AVKAGGQWDVAYPLEDFGAQIVGDDVSMAYMTAPELQRHVDTVIIQNQNTVRFELLKRLFNNAASTFSDPQYGALTIQPLANGDSVLYPPVQG 171          
BLAST of mRNA_P-wetherbeei_contig54406.1.1 vs. uniprot
Match: A0A0F9RLQ3_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9RLQ3_9ZZZZ)

HSP 1 Score: 79.3 bits (194), Expect = 2.740e-14
Identity = 50/156 (32.05%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   34 AVKTGGSYSVAYPIRDKAVASAISFVAYAKMTVRDYAKHLTSIFNGDRAEVGKEILRRIFNNAATTFGDDLYGDLTVQPLANGDAIKYPPVAGSEVEATANNYLVSNYLASAIDNTNNPYATISDL-------LESYFGGARTGGSPVVIFISKSQ 480
            +VK  G + VA+P+ D     A + V  A MTV +  +H+ ++   +      E+L  + + +  TF DD  G LT++ LAN D   YPPV GS  +A   +YL    +A+AID+T++P+  ++         LE +FG  + G + +V FI++++
Sbjct:   79 SVKASGQWDVAFPLEDFGAMIAGNDVDMAYMTVDELDRHIDTVIAQNVNTSRYEVLTALMSRSNGTFIDDKQGSLTIRSLANTDGTLYPPVIGSMTDADDEHYLELGDVATAIDDTHDPWTGVNTNTVNIVAELEEHFG-IQAGSAEIVSFINQAE 233          
BLAST of mRNA_P-wetherbeei_contig54406.1.1 vs. uniprot
Match: A0A0S7BLM8_9CHLR (Uncharacterized protein n=1 Tax=Longilinea arvoryzae TaxID=360412 RepID=A0A0S7BLM8_9CHLR)

HSP 1 Score: 72.4 bits (176), Expect = 8.130e-12
Identity = 53/178 (29.78%), Postives = 83/178 (46.63%), Query Frame = 1
Query:    1 FEEMDENTAPNAVKTGGSYSVAYPIRDKAVASAISFVAYAKMTVRDYAKHLTSIFNGDRAEVGKEILRRIFNNAATTFGDDL-------YGDLTVQPLANGDAIKYPPVAGSEVEATANNYLVSNYLASAIDNTNNPYATISDLLESYFGGARTGGSPVVIFISKSQEFVTRGLAGFV 513
             + +DEN  P  V+  GSY  AYPI+    A     ++   MTV +  ++       D   + +  L  +F N   TF D +        G++T+QPLANGDA+KY    G +  AT N+YL     A+ I + +NP+  I   L  +        +P+V +++       +GL  FV
Sbjct:   71 LQPLDENGNPMPVQPSGSYQTAYPIQGGGTAWGDDRISRELMTVEEADRNTADSLRRDANWLVRHCLAAMFTNTTWTFNDKVGANGSKGLGNITIQPLANGDAVKYIR-KGIKEAATDNHYLAQ---AAEILDASNPFPAIKAELHEHPSNMN---APIVAYVASDLVASIQGLTEFV 241          
BLAST of mRNA_P-wetherbeei_contig54406.1.1 vs. uniprot
Match: A0A2N2LUQ7_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium HGW-Chloroflexi-8 TaxID=2013731 RepID=A0A2N2LUQ7_9CHLR)

HSP 1 Score: 68.6 bits (166), Expect = 1.870e-10
Identity = 52/179 (29.05%), Postives = 79/179 (44.13%), Query Frame = 1
Query:    1 FEEMDENTAPNAVKTGGSYSVAYPIRDKAVASAISFVAYAKMTVRDYAKHLTSIFNGDRAEVGKEILRRIFNNAATTFGDDL--------YGDLTVQPLANGDAIKYPPVAGSEVEATANNYLVSNYLASAIDNTNNPYATISDLLESYFGGARTGGSPVVIFISKSQEFVTRGLAGFV 513
             + +D+N  P  V   G+Y VAYPI+    A     V+   MTV +  +  +     D   + +  L  +  N   TF D           GD+T+QPLAN DA+K+    G    A  N+YL     A+AI + +NP+ TI   L  +         P+V +++       +GL  FV
Sbjct:   71 LQPLDDNGNPLPVLPSGNYQVAYPIQGGGTAWGDDRVSRELMTVEEADRFTSDSLRRDANWIVRHALAALLTNTTWTFNDKSGGAFGVKGLGDITIQPLANNDAVKFTR-KGIAASAVDNHYLAQ---AAAIADGSNPFPTIKAELHEHPSNMNL---PIVAYVASDLVSTIQGLTEFV 242          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54406.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2U7P3D0_9VIRU8.840e-3749.70Putative capsid protein n=1 Tax=Hot spring virus B... [more]
A0A0S8I6C2_9CHLR6.650e-3647.20Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
A0A5C7PGI0_9DELT1.080e-3345.29Uncharacterized protein n=1 Tax=Desulfurellales ba... [more]
A0A0F9D0T4_9ZZZZ4.240e-3338.24Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A0F9LL21_9ZZZZ5.400e-2940.51Uncharacterized protein n=3 Tax=marine sediment me... [more]
A0A257AW68_9BACT1.480e-1846.24Uncharacterized protein (Fragment) n=1 Tax=Chlorac... [more]
A0A0F9RLQ3_9ZZZZ2.740e-1432.05Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A0S7BLM8_9CHLR8.130e-1229.78Uncharacterized protein n=1 Tax=Longilinea arvoryz... [more]
A0A2N2LUQ7_9CHLR1.870e-1029.05Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54406contigP-wetherbeei_contig54406:11..529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size519
Hectar predicted targeting categoryother localisation
Exons1
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.0908108-UTR-P-wetherbeei_contig54406:10..191683186813.0908108-UTR-P-wetherbeei_contig54406:10..19Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54406 11..19 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.0995934-CDS-P-wetherbeei_contig54406:19..5291683186813.0995934-CDS-P-wetherbeei_contig54406:19..529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54406 20..529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54406.1.1prot_P-wetherbeei_contig54406.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54406 20..529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54406.1.1

>prot_P-wetherbeei_contig54406.1.1 ID=prot_P-wetherbeei_contig54406.1.1|Name=mRNA_P-wetherbeei_contig54406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
MDENTAPNAVKTGGSYSVAYPIRDKAVASAISFVAYAKMTVRDYAKHLTS
IFNGDRAEVGKEILRRIFNNAATTFGDDLYGDLTVQPLANGDAIKYPPVA
GSEVEATANNYLVSNYLASAIDNTNNPYATISDLLESYFGGARTGGSPVV
IFISKSQEFVTRGLAGFVAV
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mRNA from alignment at P-wetherbeei_contig54406:11..529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54406.1.1 ID=mRNA_P-wetherbeei_contig54406.1.1|Name=mRNA_P-wetherbeei_contig54406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig54406:11..529+ (Phaeothamnion wetherbeei SAG_119_79)
TTCGAAGAGATGGACGAAAACACCGCTCCTAACGCGGTGAAGACCGGCGG CAGCTACTCGGTGGCCTACCCGATCCGCGACAAGGCGGTTGCCTCAGCGA TCAGCTTCGTTGCCTACGCGAAGATGACCGTCCGCGACTATGCCAAGCAC CTTACCAGCATCTTCAACGGCGACCGCGCCGAGGTGGGCAAGGAGATCCT TCGGCGGATCTTCAACAACGCCGCGACGACCTTCGGCGACGACCTGTACG GCGACCTGACCGTCCAGCCGCTGGCCAATGGCGATGCGATCAAGTATCCG CCCGTGGCCGGCTCCGAGGTCGAGGCGACCGCCAACAACTACCTGGTGTC GAACTATCTCGCGTCAGCGATCGACAACACCAACAACCCCTACGCGACCA TCAGCGACCTGCTGGAAAGCTACTTCGGTGGCGCTCGAACAGGTGGCTCT CCGGTCGTGATCTTCATCAGCAAGAGCCAGGAATTCGTGACGCGCGGCCT GGCCGGTTTCGTGGCCGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54406:11..529+

>mRNA_P-wetherbeei_contig54406.1.1 ID=mRNA_P-wetherbeei_contig54406.1.1|Name=mRNA_P-wetherbeei_contig54406.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig54406:11..529+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGAAAACACCGCTCCTAACGCGGTGAAGACCGGCGGCAGCTACTC
GGTGGCCTACCCGATCCGCGACAAGGCGGTTGCCTCAGCGATCAGCTTCG
TTGCCTACGCGAAGATGACCGTCCGCGACTATGCCAAGCACCTTACCAGC
ATCTTCAACGGCGACCGCGCCGAGGTGGGCAAGGAGATCCTTCGGCGGAT
CTTCAACAACGCCGCGACGACCTTCGGCGACGACCTGTACGGCGACCTGA
CCGTCCAGCCGCTGGCCAATGGCGATGCGATCAAGTATCCGCCCGTGGCC
GGCTCCGAGGTCGAGGCGACCGCCAACAACTACCTGGTGTCGAACTATCT
CGCGTCAGCGATCGACAACACCAACAACCCCTACGCGACCATCAGCGACC
TGCTGGAAAGCTACTTCGGTGGCGCTCGAACAGGTGGCTCTCCGGTCGTG
ATCTTCATCAGCAAGAGCCAGGAATTCGTGACGCGCGGCCTGGCCGGTTT
CGTGGCCGTT
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