mRNA_P-wetherbeei_contig54402.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54402.1.1
Unique NamemRNA_P-wetherbeei_contig54402.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54402.1.1 vs. uniprot
Match: UPI0019975279 (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019975279)

HSP 1 Score: 241 bits (614), Expect = 1.630e-76
Identity = 120/175 (68.57%), Postives = 143/175 (81.71%), Query Frame = 1
Query:    1 MLGQQFGVDNRSGASGNIGVEMAAKSLPDGYTVVINNVSTGAINPIAFAKTLKFDSSKELIGVSLLASVPNLLVAGSNFPPNSLKELIDYAKARPGQLNYSNPIGAYSHLDMLEFMSKAGIQMVNVPSKGAGSSFAPVIAGEIHASFLNAATVTPQVKAGRMKAFVTTAKSRLPD 525
             LGQQF VDNR+GASGNIG E+ A++ PDG+TV+I NVST AINP AFA TL FD  KEL+GV+L++ +PNLLVA + FPP   KEL+ YA+ARPGQLNYSNPIGAYSHLDMLEF+++AGIQMVNVP+KGAG++ A V+ GEIH  F NAATVTPQV  GRMKA+ T+   RL D
Sbjct:   74 QLGQQFIVDNRAGASGNIGTEIVARAQPDGHTVLIGNVSTNAINPTAFAGTLSFDPVKELVGVTLISRIPNLLVAAATFPPKDFKELLAYARARPGQLNYSNPIGAYSHLDMLEFLTRAGIQMVNVPTKGAGATVAAVLNGEIHFYFTNAATVTPQVLGGRMKAYATSGAQRLAD 248          
BLAST of mRNA_P-wetherbeei_contig54402.1.1 vs. uniprot
Match: UPI0019C66C64 (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019C66C64)

HSP 1 Score: 233 bits (595), Expect = 3.120e-74
Identity = 115/175 (65.71%), Postives = 143/175 (81.71%), Query Frame = 1
Query:    1 MLGQQFGVDNRSGASGNIGVEMAAKSLPDGYTVVINNVSTGAINPIAFAKTLKFDSSKELIGVSLLASVPNLLVAGSNFPPNSLKELIDYAKARPGQLNYSNPIGAYSHLDMLEFMSKAGIQMVNVPSKGAGSSFAPVIAGEIHASFLNAATVTPQVKAGRMKAFVTTAKSRLPD 525
            +LGQ   VDNR+GA+GNI +E+ A++ PDGYTV+++NVST +INPI +A TLKFD  KEL GV+LLA++PNLLV+G+ FPP S KE+I YA+ARPGQ+NYS P+G YSHLDML+  ++ G+Q+VNVPSKGAGSS A +I GEIH S  NAA+ T QVKAGRMKAF TTA  RLPD
Sbjct:   29 VLGQSVIVDNRAGAAGNIAMEIVARAQPDGYTVLVSNVSTASINPILYAGTLKFDPVKELAGVTLLAAIPNLLVSGAGFPPTSFKEVIAYARARPGQMNYSTPLGGYSHLDMLDLAARTGMQLVNVPSKGAGSSAASIINGEIHFSIANAASTTAQVKAGRMKAFATTATKRLPD 203          
BLAST of mRNA_P-wetherbeei_contig54402.1.1 vs. uniprot
Match: UPI001C0C8473 (tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Polynucleobacter sp. UK-Mo-2m-Kol15 TaxID=2576916 RepID=UPI001C0C8473)

HSP 1 Score: 214 bits (546), Expect = 2.150e-66
Identity = 103/174 (59.20%), Postives = 140/174 (80.46%), Query Frame = 1
Query:    1 MLGQQFGVDNRSGASGNIGVEMAAKSLPDGYTVVINNVSTGAINPIAFAKTLKFDSSKELIGVSLLASVPNLLVAGSNFPPNSLKELIDYAKARPGQLNYSNPIGAYSHLDMLEFMSKAGIQMVNVPSKGAGSSFAPVIAGEIHASFLNAATVTPQVKAGRMKAFVTTAKSRLP 522
            ++G+   V+N++GASGNIG+   A+S PDGYT+++ NVST AIN   +AK LK   S++L+ ++++AS+PN++V+G NFPPN+LKEL+ YAK RPG+LN+S P+G YS+LDML+F  +AGI MVN+PSKGAGSS   +IAGEIH S LNAATVT  +K+GRMKAF TT+ +RLP
Sbjct:   62 VVGESVFVENKTGASGNIGMTAVAQSAPDGYTLLMGNVSTNAINEFIYAKQLKVSPSQDLVPITMIASIPNIIVSGPNFPPNNLKELVAYAKQRPGELNFSAPLGGYSNLDMLDFNRQAGISMVNIPSKGAGSSQTSIIAGEIHFSILNAATVTEIIKSGRMKAFATTSATRLP 235          
BLAST of mRNA_P-wetherbeei_contig54402.1.1 vs. uniprot
Match: A0A3N5WKU2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WKU2_9PROT)

HSP 1 Score: 189 bits (479), Expect = 3.680e-56
Identity = 91/174 (52.30%), Postives = 127/174 (72.99%), Query Frame = 1
Query:    4 LGQQFGVDNRSGASGNIGVEMAAKSLPDGYTVVINNVSTGAINPIAFAKTLKFDSSKELIGVSLLASVPNLLVAGSNFPPNSLKELIDYAKARPGQLNYSNPIGAYSHLDMLEFMSKAGIQMVNVPSKGAGSSFAPVIAGEIHASFLNAATVTPQVKAGRMKAFVTTAKSRLPD 525
            LGQQ  +DNR+GA+GNI VE+ A++ PDGYT+++ N+ST +INPI FAK  K ++ K+L GVS L ++PN ++     P  +LKE +DYAKARPGQLN+  P+G+YSHLDML   + AG++MV++PSKGAG +   ++ G+IH +  N A+    VKAG++KAF  TA  RLPD
Sbjct:   75 LGQQVVIDNRTGAAGNIAVELVAQAQPDGYTLLVGNISTNSINPIMFAKRSKVNALKDLTGVSKLVAIPNFILGSPKIPATTLKEALDYAKARPGQLNFQAPLGSYSHLDMLALTAAAGVKMVHLPSKGAGETIPALLRGDIHITESNVASNIGAVKAGQVKAFAVTAAQRLPD 248          
BLAST of mRNA_P-wetherbeei_contig54402.1.1 vs. uniprot
Match: A0A7C2YWM6_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YWM6_9PROT)

HSP 1 Score: 182 bits (462), Expect = 8.610e-54
Identity = 86/174 (49.43%), Postives = 128/174 (73.56%), Query Frame = 1
Query:    4 LGQQFGVDNRSGASGNIGVEMAAKSLPDGYTVVINNVSTGAINPIAFAKTLKFDSSKELIGVSLLASVPNLLVAGSNFPPNSLKELIDYAKARPGQLNYSNPIGAYSHLDMLEFMSKAGIQMVNVPSKGAGSSFAPVIAGEIHASFLNAATVTPQVKAGRMKAFVTTAKSRLPD 525
            LGQQ  VDNR GA+GNI VE+ A++ PDGYT+++ N+ST +INPI FA+ +K ++ K+L GV+ L ++PN ++     P N+LKE I+YA+ARPGQLNY  P+G+YSHLDML   + AGI+MV++PS+GAG +   ++ G+IH +  N A+    V+AG++KA+  T++ RL +
Sbjct:   59 LGQQIVVDNRPGAAGNIAVELTAQAQPDGYTLLVGNISTNSINPILFARQMKVNAVKDLTGVTKLVAIPNFILGSPKLPANTLKEAIEYARARPGQLNYQAPLGSYSHLDMLALQAAAGIKMVHLPSRGAGETLPALLRGDIHITESNVASNIGAVRAGQIKAYAVTSEKRLDE 232          
BLAST of mRNA_P-wetherbeei_contig54402.1.1 vs. uniprot
Match: A0A1F4DRR8_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DRR8_9PROT)

HSP 1 Score: 181 bits (460), Expect = 1.590e-53
Identity = 88/174 (50.57%), Postives = 125/174 (71.84%), Query Frame = 1
Query:    4 LGQQFGVDNRSGASGNIGVEMAAKSLPDGYTVVINNVSTGAINPIAFAKTLKFDSSKELIGVSLLASVPNLLVAGSNFPPNSLKELIDYAKARPGQLNYSNPIGAYSHLDMLEFMSKAGIQMVNVPSKGAGSSFAPVIAGEIHASFLNAATVTPQVKAGRMKAFVTTAKSRLPD 525
            LGQQ  VDNR GA+GNI VE+ A++ PDGYT+++ N+ST +INP+ FAK +K ++ K+L GV+ L ++PN ++     P N+LKE I YAK RPGQLNY  P+G+YSHLDML   + AGI+MV++PS+GAG +   ++ G+IH +  N A+    V+AG++KAF  T+  RL D
Sbjct:   61 LGQQVVVDNRPGAAGNIAVELTAQAQPDGYTLLVGNISTNSINPLLFAKQMKTNAIKDLAGVTKLVAIPNFILGSPKLPANTLKEAIAYAKERPGQLNYQAPLGSYSHLDMLALQAAAGIKMVHLPSRGAGETLTAMLRGDIHITESNVASNIGGVRAGQVKAFAVTSDKRLAD 234          
BLAST of mRNA_P-wetherbeei_contig54402.1.1 vs. uniprot
Match: A0A7C3NPA8_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3NPA8_9PROT)

HSP 1 Score: 179 bits (455), Expect = 9.690e-53
Identity = 87/174 (50.00%), Postives = 125/174 (71.84%), Query Frame = 1
Query:    4 LGQQFGVDNRSGASGNIGVEMAAKSLPDGYTVVINNVSTGAINPIAFAKTLKFDSSKELIGVSLLASVPNLLVAGSNFPPNSLKELIDYAKARPGQLNYSNPIGAYSHLDMLEFMSKAGIQMVNVPSKGAGSSFAPVIAGEIHASFLNAATVTPQVKAGRMKAFVTTAKSRLPD 525
            LGQQ  VDNR GA+GNI VE+ A++ PDGYT+++ N+ST +INPI FA  +K ++ K+L GV+ L ++PN ++     P N+LKE I YA+ RPGQLNY  P+G+YSHLDML F + AGI+MV++PS+GAG +   ++ G+IH +  N A+    V+AG++KAF  T+  RL +
Sbjct:   59 LGQQLVVDNRPGAAGNIAVELTAQAQPDGYTLLVGNISTNSINPILFAGKMKTNAIKDLTGVTKLVAIPNFILGSPKLPANTLKEAIAYARERPGQLNYQAPLGSYSHLDMLAFQAAAGIRMVHLPSRGAGETLPALLRGDIHITESNVASNIGAVRAGQIKAFAVTSDKRLAE 232          
BLAST of mRNA_P-wetherbeei_contig54402.1.1 vs. uniprot
Match: A0A536ZDT2_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536ZDT2_9PROT)

HSP 1 Score: 178 bits (452), Expect = 6.380e-52
Identity = 90/176 (51.14%), Postives = 127/176 (72.16%), Query Frame = 1
Query:    4 LGQQFGVDNRSGASGNIGVEMAAKSLPDGYTVVINNVSTGAINPIAFAKTLKFDSSKELIGVSLLASVPNLLVAGSNFPPNSLKELIDYAKARPGQLNYSNP-IGAYSHLDMLEFMSKAGIQMVNVPSKG-AGSSFAPVIAGEIHASFLNAATVTPQVKAGRMKAFVTTAKSRLPD 525
            LGQ F VDNR+GASGNI +E  AK+ PDGYT+++ NVST AIN   FA  L+   S++L+G+S L  +P++LVA ++FPPN++ E+I++AK  PG+LNY++  IG Y HLDML F   AGI ++++P KG AG     +++GE+  SF+N A+   QVKAGR+KA  TT  +RLP+
Sbjct:   90 LGQPFVVDNRAGASGNIALEAEAKAAPDGYTLLVGNVSTNAINESTFAGVLQTQPSRDLVGISKLVEIPHVLVAATSFPPNTVAEVIEWAKKNPGKLNYASAGIGTYPHLDMLRFAKAAGIDVIHIPYKGGAGQMLPALMSGEVQLSFINLASTIEQVKAGRIKAIATTMPTRLPE 265          
BLAST of mRNA_P-wetherbeei_contig54402.1.1 vs. uniprot
Match: A0A537A6I6_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A6I6_9PROT)

HSP 1 Score: 172 bits (437), Expect = 8.310e-50
Identity = 86/177 (48.59%), Postives = 124/177 (70.06%), Query Frame = 1
Query:    1 MLGQQFGVDNRSGASGNIGVEMAAKSLPDGYTVVINNVSTGAINPIAFAKTLKFDSSKELIGVSLLASVPNLLVAGSNFPPNSLKELIDYAKARPGQLNYSNP-IGAYSHLDMLEFMSKAGIQMVNVPSKG-AGSSFAPVIAGEIHASFLNAATVTPQVKAGRMKAFVTTAKSRLPD 525
            +LGQ F VDNR GASGNI +E AAK+ PDGYT+ + NVST AIN   FA  L    S++L+G+S L  +P++LVA ++FPPNS+ E+I++AK  PG+LNY++  +G Y  LDML  +  AGI+  ++P KG AG     +++GE+  SF+N A+   Q++AGR+KA  TT  +R+P+
Sbjct:   77 VLGQPFVVDNRPGASGNIALEAAAKATPDGYTLEVGNVSTNAINESTFANVLPIKPSRDLVGISKLVEIPHVLVAATSFPPNSVAEMIEWAKRNPGKLNYASAGLGTYPQLDMLRLLKVAGIEATHIPYKGGAGQMLPALMSGEVQVSFINLASTIEQIRAGRLKALATTMPTRVPE 253          
BLAST of mRNA_P-wetherbeei_contig54402.1.1 vs. uniprot
Match: A0A537DK57_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537DK57_9PROT)

HSP 1 Score: 171 bits (432), Expect = 4.320e-49
Identity = 83/177 (46.89%), Postives = 124/177 (70.06%), Query Frame = 1
Query:    1 MLGQQFGVDNRSGASGNIGVEMAAKSLPDGYTVVINNVSTGAINPIAFAKTLKFDSSKELIGVSLLASVPNLLVAGSNFPPNSLKELIDYAKARPGQLNYSNP-IGAYSHLDMLEFMSKAGIQMVNVPSKGAGSSFAPVI-AGEIHASFLNAATVTPQVKAGRMKAFVTTAKSRLPD 525
            +LGQ F VDNR+GASGNI +E AAK+ PDGYT+++ NVST AIN   FA  L+   S++L+G+S L  +P+++VA  +FPPNS+ E+I++AK  PG+LNY++  +G Y  LDML  +  AGI+  ++P KG  +   P +  GE+  +F+N A+   Q++AGR+KA  TT  +R+P+
Sbjct:   74 VLGQPFVVDNRAGASGNIALEAAAKAAPDGYTLLVGNVSTNAINESTFAAVLQTRPSRDLVGISKLVEIPHVVVAAPSFPPNSVAEMIEWAKRNPGKLNYASAGLGTYPQLDMLRLLKAAGIEATHIPYKGGAAQMLPALMTGEVQVAFINLASTIEQIRAGRLKAIATTMPTRVPE 250          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54402.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00199752791.630e-7668.57Tripartite tricarboxylate transporter substrate bi... [more]
UPI0019C66C643.120e-7465.71Tripartite tricarboxylate transporter substrate bi... [more]
UPI001C0C84732.150e-6659.20tripartite tricarboxylate transporter substrate bi... [more]
A0A3N5WKU2_9PROT3.680e-5652.30Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7C2YWM6_9PROT8.610e-5449.43Tripartite tricarboxylate transporter substrate bi... [more]
A0A1F4DRR8_9PROT1.590e-5350.57Uncharacterized protein (Fragment) n=1 Tax=Betapro... [more]
A0A7C3NPA8_9PROT9.690e-5350.00Tripartite tricarboxylate transporter substrate bi... [more]
A0A536ZDT2_9PROT6.380e-5251.14Tripartite tricarboxylate transporter substrate bi... [more]
A0A537A6I6_9PROT8.310e-5048.59Tripartite tricarboxylate transporter substrate bi... [more]
A0A537DK57_9PROT4.320e-4946.89Tripartite tricarboxylate transporter substrate bi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54402contigP-wetherbeei_contig54402:2..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1125973.JNLC01000011_gene591
PFAMsTctC
Model size525
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.75e-41
EggNOG OGsCOG3181@1|root,COG3181@2|Bacteria,1MU58@1224|Proteobacteria,2TQWK@28211|Alphaproteobacteria
DescriptionProtein conserved in bacteria
Cds size525
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.0044358-CDS-P-wetherbeei_contig54402:1..5261683186813.0044358-CDS-P-wetherbeei_contig54402:1..526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54402 2..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54402.1.1prot_P-wetherbeei_contig54402.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54402 2..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54402.1.1

>prot_P-wetherbeei_contig54402.1.1 ID=prot_P-wetherbeei_contig54402.1.1|Name=mRNA_P-wetherbeei_contig54402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
MLGQQFGVDNRSGASGNIGVEMAAKSLPDGYTVVINNVSTGAINPIAFAK
TLKFDSSKELIGVSLLASVPNLLVAGSNFPPNSLKELIDYAKARPGQLNY
SNPIGAYSHLDMLEFMSKAGIQMVNVPSKGAGSSFAPVIAGEIHASFLNA
ATVTPQVKAGRMKAFVTTAKSRLPD
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mRNA from alignment at P-wetherbeei_contig54402:2..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54402.1.1 ID=mRNA_P-wetherbeei_contig54402.1.1|Name=mRNA_P-wetherbeei_contig54402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig54402:2..526+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGGGCAGCAGTTCGGCGTCGATAACCGGTCAGGCGCGTCCGGCAA TATCGGCGTCGAGATGGCGGCGAAGTCGCTGCCGGACGGCTACACCGTGG TGATCAACAACGTGTCTACAGGCGCGATCAATCCCATCGCGTTCGCGAAG ACGCTCAAGTTCGATTCTTCCAAAGAACTGATCGGCGTGTCGCTGCTCGC ATCCGTGCCCAATCTGCTGGTGGCGGGAAGCAACTTTCCGCCCAACAGCT TGAAGGAACTGATCGATTACGCGAAGGCGCGCCCCGGCCAGCTCAATTAC TCCAACCCGATCGGCGCCTATTCGCATCTCGACATGCTCGAGTTCATGTC GAAGGCCGGCATCCAGATGGTGAACGTGCCGTCGAAAGGCGCGGGCTCGT CGTTCGCGCCGGTGATCGCCGGTGAAATTCACGCGTCATTCCTCAACGCC GCCACGGTCACTCCGCAGGTCAAGGCGGGACGCATGAAAGCGTTCGTCAC GACCGCGAAGTCGCGCCTGCCGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54402:2..526+

>mRNA_P-wetherbeei_contig54402.1.1 ID=mRNA_P-wetherbeei_contig54402.1.1|Name=mRNA_P-wetherbeei_contig54402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig54402:2..526+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGGGCAGCAGTTCGGCGTCGATAACCGGTCAGGCGCGTCCGGCAA
TATCGGCGTCGAGATGGCGGCGAAGTCGCTGCCGGACGGCTACACCGTGG
TGATCAACAACGTGTCTACAGGCGCGATCAATCCCATCGCGTTCGCGAAG
ACGCTCAAGTTCGATTCTTCCAAAGAACTGATCGGCGTGTCGCTGCTCGC
ATCCGTGCCCAATCTGCTGGTGGCGGGAAGCAACTTTCCGCCCAACAGCT
TGAAGGAACTGATCGATTACGCGAAGGCGCGCCCCGGCCAGCTCAATTAC
TCCAACCCGATCGGCGCCTATTCGCATCTCGACATGCTCGAGTTCATGTC
GAAGGCCGGCATCCAGATGGTGAACGTGCCGTCGAAAGGCGCGGGCTCGT
CGTTCGCGCCGGTGATCGCCGGTGAAATTCACGCGTCATTCCTCAACGCC
GCCACGGTCACTCCGCAGGTCAAGGCGGGACGCATGAAAGCGTTCGTCAC
GACCGCGAAGTCGCGCCTGCCGGAC
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