mRNA_P-wetherbeei_contig54387.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A6B7EUY5_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUY5_9PHAE) HSP 1 Score: 102 bits (253), Expect = 6.560e-27 Identity = 58/73 (79.45%), Postives = 62/73 (84.93%), Query Frame = 1
Query: 10 MDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
M FFSLFSI+LNILLI IILIRSPNEQSLQENL PFKLFESS+RAE SIDK +QILT YF +AI YVI YF
Sbjct: 1 MTFFSLFSILLNILLILIILIRSPNEQSLQENLIPFKLFESSRRAETSIDKLLQILTILYFTIAICYVIGSYF 73
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: D1J765_ECTSI (Uncharacterized protein ycf47 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J765_ECTSI) HSP 1 Score: 102 bits (253), Expect = 7.120e-27 Identity = 57/75 (76.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query: 4 NSMDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
N FS+ SI+LNILLISIILIRSPNEQSLQENL PFK FESS RAE SIDK IQILT FYFI+A+ Y+IQ YF
Sbjct: 2 NYTTIFSIISILLNILLISIILIRSPNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTIFYFIIALIYIIQSYF 76
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A344PF79_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PF79_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 4.810e-25 Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1
Query: 4 NSMDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
NSM F + SI+LNILLI IILIRSPNEQSLQENL PF+LFESS RAE SIDK IQ+LT YF++A+ YVIQ YF
Sbjct: 2 NSMTLFGILSIMLNILLILIILIRSPNEQSLQENLAPFRLFESSSRAEKSIDKVIQLLTIGYFLLALLYVIQSYF 76
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A5A4MI59_9PHAE (Uncharacterized protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MI59_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 1.380e-24 Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query: 4 NSMDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
N M F + SI+LNILLI +IL+RSPNEQSLQENL PFKLFESS RAE SIDK IQ+LT YF++A+ YVIQ YF
Sbjct: 2 NYMTIFGVLSILLNILLILVILVRSPNEQSLQENLAPFKLFESSSRAEKSIDKFIQLLTVLYFLLALIYVIQSYF 76
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A0R6LUQ0_UNDPI (Probable protein-export membrane protein SecG n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUQ0_UNDPI) HSP 1 Score: 92.8 bits (229), Expect = 3.240e-23 Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 1
Query: 4 NSMDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
++++ FS+ SIILN L+ IIL+RSPNEQSLQENL PFKLFESS RAE SIDK IQILT YF++A+ Y IQ YF
Sbjct: 2 SNVNIFSILSIILNFSLVLIILVRSPNEQSLQENLDPFKLFESSSRAEKSIDKLIQILTILYFVLALVYTIQRYF 76
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A8F0F7T2_9PHAE (Probable protein-export membrane protein SecG n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7T2_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 9.300e-23 Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query: 4 NSMDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
N D FSL SI NILLI +IL+RSPNEQSLQENL P KLFESS +AE SIDK IQIL FYF++A+ Y IQ YF
Sbjct: 2 NYKDIFSLLSITSNILLILVILVRSPNEQSLQENLDPLKLFESSSKAEKSIDKLIQILAIFYFVLALCYNIQSYF 76
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A8F0F9M4_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9M4_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 2.190e-21 Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 10 MDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
M+ F + + ILNI+LI +IL+RSPNEQSLQENL PF LFESS RAE SID+ I+ LTF YF +A+ Y IQGYF
Sbjct: 4 MNIFGILTTILNIVLILVILVRSPNEQSLQENLDPFNLFESSSRAEKSIDRLIKRLTFMYFFLALFYAIQGYF 76
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A141BSB1_9PHAE (Probable protein-export membrane protein SecG n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSB1_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 1.660e-20 Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 1
Query: 10 MDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGY 225
M FFS+ SII+N L+ IILIRSPNEQSLQENL PFK+FESS +AE SID I+ILT YF +A+ Y I+ Y
Sbjct: 1 MKFFSIISIIVNFFLVLIILIRSPNEQSLQENLDPFKIFESSSKAENSIDNLIKILTIIYFSIALAYNIKNY 72
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A1I9LVL0_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVL0_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 5.980e-19 Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query: 4 NSMDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
N M F + SI+LNILLISIILIRSPNE SL+ENLTPF F SS AE SID I +L FYF++A+ ++IQG+F
Sbjct: 2 NDMMIFIIISIVLNILLISIILIRSPNEISLKENLTPFNFFASSSSAEKSIDNLIIVLITFYFLLALIHIIQGFF 76
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Match: A0A2R4QPS9_9PHAE (Hypothetical chloroplast protein ycf47 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPS9_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 3.450e-18 Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 1
Query: 16 FFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDKSIQILTFFYFIVAIGYVIQGYF 228
F S+ SI +NI+LI IILIRSPNEQSLQENL PFK FESS +AEI ID IQIL YF +A+ Y I+ YF
Sbjct: 6 FLSIISIGINIILIFIILIRSPNEQSLQENLDPFKFFESSSKAEIFIDNLIQILVVLYFSLALLYNIKNYF 76 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54387.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig54387.1.1 >prot_P-wetherbeei_contig54387.1.1 ID=prot_P-wetherbeei_contig54387.1.1|Name=mRNA_P-wetherbeei_contig54387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp MDFFSLFSIILNILLISIILIRSPNEQSLQENLTPFKLFESSKRAEISIDback to top mRNA from alignment at P-wetherbeei_contig54387:11..241- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig54387.1.1 ID=mRNA_P-wetherbeei_contig54387.1.1|Name=mRNA_P-wetherbeei_contig54387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig54387:11..241- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig54387:11..241- >mRNA_P-wetherbeei_contig54387.1.1 ID=mRNA_P-wetherbeei_contig54387.1.1|Name=mRNA_P-wetherbeei_contig54387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig54387:11..241- (Phaeothamnion wetherbeei SAG_119_79)back to top |