mRNA_P-wetherbeei_contig5435.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5435.1.1
Unique NamemRNA_P-wetherbeei_contig5435.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5435.1.1 vs. uniprot
Match: A0A482SYC1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYC1_9ARCH)

HSP 1 Score: 65.1 bits (157), Expect = 5.830e-10
Identity = 33/97 (34.02%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:    1 HHLQVGIGHIFLGIFVLQGDPTLDTVRRLLSAEIRAGAVTVVP---------FKIAGFDCIDTDPLKLSFYHACLHRAKGTSEYVAMWDVDEYWLPN 264
            HHL +GI HIFLG+      P +  + R+L   +  G +++           F +AG   I   P+K+   + CL+ AKG ++Y+A+WDVDE+++ N
Sbjct:  987 HHLSIGIQHIFLGVTFAWKSPHMRRLLRVLKPFMDEGKLSIASHTADNLDYRFTLAG-TVIRNTPIKVYSVNLCLYYAKGMADYIAIWDVDEFFVLN 1082
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BLAST of mRNA_P-wetherbeei_contig5435.1.1 vs. uniprot
Match: A0A835Z1P6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1P6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.350e-8
Identity = 29/89 (32.58%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    1 HHLQVGIGHIFLGIFVLQGDPTLDTVRRLLSAEIRAGAVTVVPFKIAGF-DCIDTDPLKLSFYHACLHRAKGTSEYVAMWDVDEYWLPN 264
            HHLQ+G+G I+LG +          V++ L+  I  G V ++      F   ++T   ++  Y  CL  AKG ++++A+WD+DEY++P+
Sbjct:  321 HHLQIGVGLIYLGTY----KENFYAVKQELAHFIHQGTVVLLMVHEPCFLSSLNTIATQVELYQVCLAHAKGHAKFMAIWDIDEYFVPS 405
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BLAST of mRNA_P-wetherbeei_contig5435.1.1 vs. uniprot
Match: A0A812MFP4_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812MFP4_SYMMI)

HSP 1 Score: 57.4 bits (137), Expect = 2.870e-7
Identity = 31/96 (32.29%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:    1 HHLQVGIGHIFLGIFVLQGDPTL----DTVR-----RLLSAEIRAGAVTVVPFKIAGFDCIDTDPLKLSFYHACLHRAKGTSEYVAMWDVDEYWLP 261
            HH  +G+ H+ +      G P +    + VR      L+S    AG   +V +   G   +D D +K+   + CL+ AKG ++YVA+WD+DEY++P
Sbjct:  748 HHFNLGVQHMHIAATYTWGSPNMNMFVEAVRPYIDDSLMSVTSEAGDEDLV-YGFLGMS-MDRDNVKIFNVNMCLYHAKGVADYVAIWDIDEYFIP 841
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5435.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A482SYC1_9ARCH5.830e-1034.02Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A835Z1P6_9STRA4.350e-832.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812MFP4_SYMMI2.870e-732.29Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5435contigP-wetherbeei_contig5435:6..335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size330
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186812.0390599-CDS-P-wetherbeei_contig5435:5..3351683186812.0390599-CDS-P-wetherbeei_contig5435:5..335Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5435 6..335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5435.1.1prot_P-wetherbeei_contig5435.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5435 6..335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5435.1.1

>prot_P-wetherbeei_contig5435.1.1 ID=prot_P-wetherbeei_contig5435.1.1|Name=mRNA_P-wetherbeei_contig5435.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
HHLQVGIGHIFLGIFVLQGDPTLDTVRRLLSAEIRAGAVTVVPFKIAGFD
CIDTDPLKLSFYHACLHRAKGTSEYVAMWDVDEYWLPNGLGGGGLDGRGD
GEITETAETA
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mRNA from alignment at P-wetherbeei_contig5435:6..335+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5435.1.1 ID=mRNA_P-wetherbeei_contig5435.1.1|Name=mRNA_P-wetherbeei_contig5435.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig5435:6..335+ (Phaeothamnion wetherbeei SAG_119_79)
CATCACCTGCAAGTCGGCATTGGCCATATCTTCCTCGGGATCTTCGTCTT
GCAAGGCGATCCCACGCTAGACACTGTAAGGCGCCTCCTGAGCGCCGAAA
TCCGCGCCGGCGCCGTGACCGTCGTGCCGTTTAAGATAGCGGGGTTCGAC
TGCATCGATACTGACCCGCTGAAGTTGAGCTTTTACCATGCCTGCCTCCA
CCGTGCCAAGGGCACGTCCGAATACGTCGCCATGTGGGATGTCGATGAGT
ACTGGCTGCCGAACGGGCTAGGGGGCGGCGGCCTGGACGGCCGCGGTGAC
GGCGAAATCACCGAAACGGCCGAAACGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5435:6..335+

>mRNA_P-wetherbeei_contig5435.1.1 ID=mRNA_P-wetherbeei_contig5435.1.1|Name=mRNA_P-wetherbeei_contig5435.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig5435:6..335+ (Phaeothamnion wetherbeei SAG_119_79)
CATCACCTGCAAGTCGGCATTGGCCATATCTTCCTCGGGATCTTCGTCTT
GCAAGGCGATCCCACGCTAGACACTGTAAGGCGCCTCCTGAGCGCCGAAA
TCCGCGCCGGCGCCGTGACCGTCGTGCCGTTTAAGATAGCGGGGTTCGAC
TGCATCGATACTGACCCGCTGAAGTTGAGCTTTTACCATGCCTGCCTCCA
CCGTGCCAAGGGCACGTCCGAATACGTCGCCATGTGGGATGTCGATGAGT
ACTGGCTGCCGAACGGGCTAGGGGGCGGCGGCCTGGACGGCCGCGGTGAC
GGCGAAATCACCGAAACGGCCGAAACGGCC
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