mRNA_P-wetherbeei_contig5430.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5430.1.1
Unique NamemRNA_P-wetherbeei_contig5430.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5430.1.1 vs. uniprot
Match: A0A3C0TSF1_9PROT (Crotonase/enoyl-CoA hydratase family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TSF1_9PROT)

HSP 1 Score: 257 bits (656), Expect = 1.330e-84
Identity = 124/131 (94.66%), Postives = 128/131 (97.71%), Query Frame = 1
Query:   10 MHALFEKQGHVAIITMNRPEALNALSPEMLCRLVDYWKEVRDNPDIRVAVVTGAGPKSFCSGADLGQLIPLFTGARTPQNDYEKRVVEDRGLTGIGILRDFDTVKPVVAAVNGFAVAGGTEMLQGTEIRVA 402
            MHALFEKQGHV IITMNRP+ALNALSPEM+C+L DYWKEVRDNPDIRVAVVTGAGPKSFCSGADLGQLIPLFTGARTPQNDYEKRVV DRGLTGIGILRDFDTVKPVVAAVNGFAVAGGTEMLQGT+IRVA
Sbjct:    1 MHALFEKQGHVGIITMNRPDALNALSPEMICQLADYWKEVRDNPDIRVAVVTGAGPKSFCSGADLGQLIPLFTGARTPQNDYEKRVVADRGLTGIGILRDFDTVKPVVAAVNGFAVAGGTEMLQGTDIRVA 131          
BLAST of mRNA_P-wetherbeei_contig5430.1.1 vs. uniprot
Match: A0A353LU98_9PROT (Crotonase/enoyl-CoA hydratase family protein (Fragment) n=5 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LU98_9PROT)

HSP 1 Score: 244 bits (624), Expect = 4.600e-80
Identity = 117/134 (87.31%), Postives = 128/134 (95.52%), Query Frame = 1
Query:    1 EENMHALFEKQGHVAIITMNRPEALNALSPEMLCRLVDYWKEVRDNPDIRVAVVTGAGPKSFCSGADLGQLIPLFTGARTPQNDYEKRVVEDRGLTGIGILRDFDTVKPVVAAVNGFAVAGGTEMLQGTEIRVA 402
            EE MHALFEKQGH+A ITMNRP+ALNALSPEM+CRLVDYW+EV D+ +IRVA+VTGAG KSFCSGADLGQLIPLFTGAR PQN+YE+RVV+DRGLTGIGILRDFDTVKPVVAAVNGFAVAGGTEMLQGT+IRVA
Sbjct:   16 EETMHALFEKQGHIATITMNRPDALNALSPEMICRLVDYWQEVHDDDNIRVAIVTGAGAKSFCSGADLGQLIPLFTGAREPQNEYEERVVKDRGLTGIGILRDFDTVKPVVAAVNGFAVAGGTEMLQGTDIRVA 149          
BLAST of mRNA_P-wetherbeei_contig5430.1.1 vs. uniprot
Match: A0A3D5V084_9HYPH (Crotonase/enoyl-CoA hydratase family protein (Fragment) n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A3D5V084_9HYPH)

HSP 1 Score: 184 bits (466), Expect = 1.350e-56
Identity = 82/129 (63.57%), Postives = 108/129 (83.72%), Query Frame = 1
Query:   16 ALFEKQGHVAIITMNRPEALNALSPEMLCRLVDYWKEVRDNPDIRVAVVTGAGPKSFCSGADLGQLIPLFTGARTPQNDYEKRVVEDRGLTGIGILRDFDTVKPVVAAVNGFAVAGGTEMLQGTEIRVA 402
            AL EK+GH+A+IT+NRPEA N+ SPEML RL D+W+EVRD+ +IRVA+VTGAG K+FCSGADLGQLIPL  GAR PQN+++++++ D  +   G+LR FD  KPV+AA+NGFAVAGG E+ QGT++R+A
Sbjct:    6 ALLEKRGHIALITLNRPEARNSFSPEMLVRLADHWEEVRDDANIRVAIVTGAGDKAFCSGADLGQLIPLINGAREPQNEWDRKILADPDILAKGLLRTFDVTKPVIAAINGFAVAGGMELAQGTDMRIA 134          
BLAST of mRNA_P-wetherbeei_contig5430.1.1 vs. uniprot
Match: A0A2D8RZD0_9HYPH (Enoyl-CoA hydratase n=15 Tax=Proteobacteria TaxID=1224 RepID=A0A2D8RZD0_9HYPH)

HSP 1 Score: 184 bits (466), Expect = 9.570e-56
Identity = 82/129 (63.57%), Postives = 108/129 (83.72%), Query Frame = 1
Query:   16 ALFEKQGHVAIITMNRPEALNALSPEMLCRLVDYWKEVRDNPDIRVAVVTGAGPKSFCSGADLGQLIPLFTGARTPQNDYEKRVVEDRGLTGIGILRDFDTVKPVVAAVNGFAVAGGTEMLQGTEIRVA 402
            AL EK+GH+A+IT+NRPEA N+ SPEML RL D+W+EVRD+ +IRVA+VTGAG K+FCSGADLGQLIPL  GAR PQN+++++++ D  +   G+LR FD  KPV+AA+NGFAVAGG E+ QGT++R+A
Sbjct:    6 ALLEKRGHIALITLNRPEARNSFSPEMLVRLADHWEEVRDDANIRVAIVTGAGDKAFCSGADLGQLIPLINGAREPQNEWDRKILADPDILAKGLLRTFDVTKPVIAAINGFAVAGGMELAQGTDMRIA 134          
BLAST of mRNA_P-wetherbeei_contig5430.1.1 vs. uniprot
Match: A0A2N3E7H5_9PROT (Enoyl-CoA hydratase (Fragment) n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-10 TaxID=2013656 RepID=A0A2N3E7H5_9PROT)

HSP 1 Score: 176 bits (447), Expect = 9.450e-55
Identity = 79/124 (63.71%), Postives = 103/124 (83.06%), Query Frame = 1
Query:   16 ALFEKQGHVAIITMNRPEALNALSPEMLCRLVDYWKEVRDNPDIRVAVVTGAGPKSFCSGADLGQLIPLFTGARTPQNDYEKRVVEDRGLTGIGILRDFDTVKPVVAAVNGFAVAGGTEMLQGT 387
            AL EK+GH+A+IT+NRPEA N+ SPEML RL  +W+EVRD+ +IRVA+VTGAG K+FCSGADLGQLIPL  GAR PQN++++++++D  +   G+LR FD  KPV+AA+NGFAVAGG E+ QGT
Sbjct:    6 ALLEKKGHIALITLNRPEARNSFSPEMLVRLAGHWEEVRDDVNIRVAIVTGAGDKAFCSGADLGQLIPLINGARKPQNEWDRKILDDPNILAKGLLRTFDVTKPVIAAINGFAVAGGMELAQGT 129          
BLAST of mRNA_P-wetherbeei_contig5430.1.1 vs. uniprot
Match: A0A3B8XKT4_9HYPH (Crotonase/enoyl-CoA hydratase family protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A3B8XKT4_9HYPH)

HSP 1 Score: 179 bits (454), Expect = 5.890e-54
Identity = 82/128 (64.06%), Postives = 107/128 (83.59%), Query Frame = 1
Query:   19 LFEKQGHVAIITMNRPEALNALSPEMLCRLVDYWKEVRDNPDIRVAVVTGAGPKSFCSGADLGQLIPLFTGARTPQNDYEKRVVEDRGLTGIGILRDFDTVKPVVAAVNGFAVAGGTEMLQGTEIRVA 402
            LFEK+GH+AI+T+NRPEA NA SPEML RL D WK+VRD+ DIR AVVTGAG K+FC+GADLG+LIPL +GAR P+++++++ +E   L G G+LR FD VKPV+AA+NG A+AGG E+ QGT++RVA
Sbjct:    5 LFEKRGHIAIVTLNRPEARNAFSPEMLVRLGDAWKQVRDDGDIRAAVVTGAGDKAFCAGADLGKLIPLISGARKPEDEWDQKALEAPDLIGAGLLRTFDAVKPVIAAINGHAIAGGMELAQGTDMRVA 132          
BLAST of mRNA_P-wetherbeei_contig5430.1.1 vs. uniprot
Match: A0A521PTR4_9CAUL (Crotonase/enoyl-CoA hydratase family protein n=2 Tax=unclassified Phenylobacterium TaxID=2640670 RepID=A0A521PTR4_9CAUL)

HSP 1 Score: 175 bits (444), Expect = 1.960e-52
Identity = 79/127 (62.20%), Postives = 106/127 (83.46%), Query Frame = 1
Query:   22 FEKQGHVAIITMNRPEALNALSPEMLCRLVDYWKEVRDNPDIRVAVVTGAGPKSFCSGADLGQLIPLFTGARTPQNDYEKRVVEDRGLTGIGILRDFDTVKPVVAAVNGFAVAGGTEMLQGTEIRVA 402
            FE++ HVAI+T+NRPEALNA+SPEML RL + W  VRD+ +IRVAVVTGAG ++FCSGADLG+ IPL + AR P++++++RV+ DR + G G+LR FD VKPV+AA+NG A+AGG E+ QGT++RVA
Sbjct:    7 FERRRHVAIVTLNRPEALNAISPEMLVRLAEAWTRVRDDQEIRVAVVTGAGDRAFCSGADLGRFIPLMSRARPPEDEWDRRVLADRDMLGTGLLRTFDVVKPVIAAINGHAIAGGMELAQGTDLRVA 133          
BLAST of mRNA_P-wetherbeei_contig5430.1.1 vs. uniprot
Match: A0A328BKC9_9CAUL (Crotonase/enoyl-CoA hydratase family protein n=3 Tax=Phenylobacterium TaxID=20 RepID=A0A328BKC9_9CAUL)

HSP 1 Score: 174 bits (442), Expect = 3.940e-52
Identity = 80/126 (63.49%), Postives = 104/126 (82.54%), Query Frame = 1
Query:   25 EKQGHVAIITMNRPEALNALSPEMLCRLVDYWKEVRDNPDIRVAVVTGAGPKSFCSGADLGQLIPLFTGARTPQNDYEKRVVEDRGLTGIGILRDFDTVKPVVAAVNGFAVAGGTEMLQGTEIRVA 402
            E+ GHVAI+T+NRPEA NAL+PEM+ RL   W+ VRD+PDIR AVVTG G K+FCSGADLG+LIPL + +R P++D++++VVEDR + G  +LR FD VKPVVAA+NG A+AGG E+ QGT++RVA
Sbjct:    8 ERIGHVAIVTLNRPEARNALNPEMIVRLAAAWRTVRDDPDIRAAVVTGVGDKAFCSGADLGRLIPLISRSREPEDDWDRQVVEDREILGTALLRTFDAVKPVVAAINGHAIAGGMELAQGTDLRVA 133          
BLAST of mRNA_P-wetherbeei_contig5430.1.1 vs. uniprot
Match: A0A2E5BV74_9HYPH (Enoyl-CoA hydratase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E5BV74_9HYPH)

HSP 1 Score: 172 bits (435), Expect = 4.370e-51
Identity = 79/127 (62.20%), Postives = 104/127 (81.89%), Query Frame = 1
Query:   19 LFEKQGHVAIITMNRPEALNALSPEMLCRLVDYWKEVRDNPDIRVAVVTGAGPKSFCSGADLGQLIPLFTGARTPQNDYEKRVVEDRGLTGIGILRDFDTVKPVVAAVNGFAVAGGTEMLQGTEIRV 399
            LFEK GHVA+IT+NRPEA NA +PEML RL   W+EVRD+ DIRVA++TGAG K+FCSGADLG+LIPL +GAR P+++++++ +E   L G G+LR FD  KPVVAA+NG A+AGG E+ QGT++R+
Sbjct:    5 LFEKHGHVALITLNRPEARNAFNPEMLVRLGGMWEEVRDDDDIRVAIITGAGDKAFCSGADLGKLIPLISGARQPEDEWDRKALEVPDLIGNGLLRTFDAGKPVVAALNGHAIAGGMELTQGTDLRI 131          
BLAST of mRNA_P-wetherbeei_contig5430.1.1 vs. uniprot
Match: A0A2D7ZLJ9_9CAUL (Enoyl-CoA hydratase n=5 Tax=Caulobacteraceae TaxID=76892 RepID=A0A2D7ZLJ9_9CAUL)

HSP 1 Score: 171 bits (432), Expect = 1.270e-50
Identity = 78/126 (61.90%), Postives = 103/126 (81.75%), Query Frame = 1
Query:   25 EKQGHVAIITMNRPEALNALSPEMLCRLVDYWKEVRDNPDIRVAVVTGAGPKSFCSGADLGQLIPLFTGARTPQNDYEKRVVEDRGLTGIGILRDFDTVKPVVAAVNGFAVAGGTEMLQGTEIRVA 402
            E++G V +IT+NRPEA NA+SPEML RL D W  VRD+PDIRVAVVTGAG K+FCSGADLG+ IPL + AR P++++++R++ D  + G G+LR FD VKPV+AA+NG A+AGG E+ QGT++RVA
Sbjct:    8 ERKGQVVLITLNRPEARNAISPEMLVRLADAWTAVRDDPDIRVAVVTGAGDKAFCSGADLGRFIPLMSRARPPEDEWDRRLLADGEMLGRGLLRTFDVVKPVIAAINGHAIAGGMELAQGTDLRVA 133          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5430.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TSF1_9PROT1.330e-8494.66Crotonase/enoyl-CoA hydratase family protein n=1 T... [more]
A0A353LU98_9PROT4.600e-8087.31Crotonase/enoyl-CoA hydratase family protein (Frag... [more]
A0A3D5V084_9HYPH1.350e-5663.57Crotonase/enoyl-CoA hydratase family protein (Frag... [more]
A0A2D8RZD0_9HYPH9.570e-5663.57Enoyl-CoA hydratase n=15 Tax=Proteobacteria TaxID=... [more]
A0A2N3E7H5_9PROT9.450e-5563.71Enoyl-CoA hydratase (Fragment) n=1 Tax=Alphaproteo... [more]
A0A3B8XKT4_9HYPH5.890e-5464.06Crotonase/enoyl-CoA hydratase family protein n=1 T... [more]
A0A521PTR4_9CAUL1.960e-5262.20Crotonase/enoyl-CoA hydratase family protein n=2 T... [more]
A0A328BKC9_9CAUL3.940e-5263.49Crotonase/enoyl-CoA hydratase family protein n=3 T... [more]
A0A2E5BV74_9HYPH4.370e-5162.20Enoyl-CoA hydratase n=2 Tax=Hyphomicrobiales TaxID... [more]
A0A2D7ZLJ9_9CAUL1.270e-5061.90Enoyl-CoA hydratase n=5 Tax=Caulobacteraceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5430contigP-wetherbeei_contig5430:6..407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1333998.M2A_2786
PFAMsECH_1
Model size402
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115
KEGG koko:K01692
KEGG ReactionR03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093
KEGG Pathwayko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212
KEGG ModuleM00032,M00087
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.6e-56
EggNOG OGsCOG1024@1|root,COG1024@2|Bacteria,1R3Q4@1224|Proteobacteria,2U3E5@28211|Alphaproteobacteria
EC4.2.1.17
DescriptionBelongs to the enoyl-CoA hydratase isomerase family
Cds size393
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186811.6000395-CDS-P-wetherbeei_contig5430:5..3981683186811.6000395-CDS-P-wetherbeei_contig5430:5..398Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5430 6..398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186811.6098616-UTR-P-wetherbeei_contig5430:398..4071683186811.6098616-UTR-P-wetherbeei_contig5430:398..407Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5430 399..407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5430.1.1prot_P-wetherbeei_contig5430.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5430 6..398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5430.1.1

>prot_P-wetherbeei_contig5430.1.1 ID=prot_P-wetherbeei_contig5430.1.1|Name=mRNA_P-wetherbeei_contig5430.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
MHALFEKQGHVAIITMNRPEALNALSPEMLCRLVDYWKEVRDNPDIRVAV
VTGAGPKSFCSGADLGQLIPLFTGARTPQNDYEKRVVEDRGLTGIGILRD
FDTVKPVVAAVNGFAVAGGTEMLQGTEIRVA
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mRNA from alignment at P-wetherbeei_contig5430:6..407-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5430.1.1 ID=mRNA_P-wetherbeei_contig5430.1.1|Name=mRNA_P-wetherbeei_contig5430.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig5430:6..407- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAAAACATGCACGCATTATTCGAAAAACAGGGCCATGTGGCCATCAT CACCATGAACCGGCCCGAGGCGCTGAATGCGCTTAGCCCGGAAATGCTGT GCCGCTTGGTCGATTACTGGAAGGAAGTGCGTGACAATCCCGATATTCGC GTCGCCGTCGTCACTGGCGCTGGCCCGAAATCATTTTGCTCGGGCGCCGA TCTTGGCCAGTTGATCCCGCTGTTTACCGGCGCGCGCACCCCGCAAAACG ATTATGAAAAGCGCGTGGTCGAAGATCGCGGCCTGACCGGCATCGGCATT CTGCGGGATTTTGACACCGTAAAGCCCGTCGTGGCGGCGGTGAACGGTTT CGCAGTCGCGGGCGGCACGGAAATGCTGCAAGGCACCGAGATCCGCGTGG CG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5430:6..407-

>mRNA_P-wetherbeei_contig5430.1.1 ID=mRNA_P-wetherbeei_contig5430.1.1|Name=mRNA_P-wetherbeei_contig5430.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig5430:6..407- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGCATTATTCGAAAAACAGGGCCATGTGGCCATCATCACCATGAA
CCGGCCCGAGGCGCTGAATGCGCTTAGCCCGGAAATGCTGTGCCGCTTGG
TCGATTACTGGAAGGAAGTGCGTGACAATCCCGATATTCGCGTCGCCGTC
GTCACTGGCGCTGGCCCGAAATCATTTTGCTCGGGCGCCGATCTTGGCCA
GTTGATCCCGCTGTTTACCGGCGCGCGCACCCCGCAAAACGATTATGAAA
AGCGCGTGGTCGAAGATCGCGGCCTGACCGGCATCGGCATTCTGCGGGAT
TTTGACACCGTAAAGCCCGTCGTGGCGGCGGTGAACGGTTTCGCAGTCGC
GGGCGGCACGGAAATGCTGCAAGGCACCGAGATCCGCGTGGCG
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