mRNA_P-wetherbeei_contig5427.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5427.2.1
Unique NamemRNA_P-wetherbeei_contig5427.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5427.2.1 vs. uniprot
Match: D8LGT0_ECTSI (Alpha-tubulin folding cofactor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT0_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 3.600e-54
Identity = 80/114 (70.18%), Postives = 96/114 (84.21%), Query Frame = 1 
Query:    1 MAEGISQLRDYVTGRDSQQFERLPDGVVSVTVTHNNIRARMIELKFDLHQTVGDIKAKIYTHCGTNPGMQKLVLKSGGQMLAALSDDSKMLGYYGVQSGMEVHVIDDDPFSLSR 342
            MA  ++ L+D+VT  D +QF RLP+GVVSV ++H+NI ARMIELKFDL QT+GD+K KIYTHCGTNPGMQKL L+SGGQ +  L DDSK LG+YGVQSGME+HV DDDPFSL+R
Sbjct:    1 MAADLAALKDWVTAADGEQFSRLPEGVVSVNISHSNITARMIELKFDLSQTLGDVKGKIYTHCGTNPGMQKLSLRSGGQTMCQLDDDSKKLGFYGVQSGMEIHVTDDDPFSLTR 114
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BLAST of mRNA_P-wetherbeei_contig5427.2.1 vs. uniprot
Match: A0A6H5KGJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ0_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.960e-53
Identity = 80/114 (70.18%), Postives = 96/114 (84.21%), Query Frame = 1 
Query:    1 MAEGISQLRDYVTGRDSQQFERLPDGVVSVTVTHNNIRARMIELKFDLHQTVGDIKAKIYTHCGTNPGMQKLVLKSGGQMLAALSDDSKMLGYYGVQSGMEVHVIDDDPFSLSR 342
            MA  ++ L+D+V   D +QF RLP+GVVSV ++H+NI ARMIELKFDL QT+GD+K KIYTHCGTNPGMQKL L+SGGQ +  L DDSKMLG+YGVQSGME+HV DDDPFSL+R
Sbjct:    1 MAADLAALKDWVIAADGEQFSRLPEGVVSVNISHSNITARMIELKFDLSQTIGDVKGKIYTHCGTNPGMQKLSLRSGGQTMCQLDDDSKMLGFYGVQSGMEIHVTDDDPFSLTR 114
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BLAST of mRNA_P-wetherbeei_contig5427.2.1 vs. uniprot
Match: A0A835ZAK6_9STRA (Putative tubulin-specific chaperone B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK6_9STRA)

HSP 1 Score: 153 bits (387), Expect = 4.550e-44
Identity = 69/114 (60.53%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:    1 MAEGISQLRDYVTGRDSQQFERLPDGVVSVTVTHNNIRARMIELKFDLHQTVGDIKAKIYTHCGTNPGMQKLVLKSGGQMLAALSDDSKMLGYYGVQSGMEVHVIDDDPFSLSR 342
            M+  ++ L+ +VT  D+  ++ LP G VS+TVTH+N++A MIELKFDLHQT+  +K KIYTHCGT P  QKL L+S G++L  L+DDS+MLGYYG +SGMEVHV+D DPFSLSR
Sbjct:    1 MSADMAALKGWVTAADANMYKSLPHGTVSLTVTHSNLKATMIELKFDLHQTIESVKRKIYTHCGTKPDSQKLQLRSAGRVLTMLADDSRMLGYYGAESGMEVHVMDTDPFSLSR 114
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BLAST of mRNA_P-wetherbeei_contig5427.2.1 vs. uniprot
Match: A0A7S2W9K5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9K5_9STRA)

HSP 1 Score: 150 bits (380), Expect = 7.740e-43
Identity = 67/113 (59.29%), Postives = 90/113 (79.65%), Query Frame = 1 
Query:    4 AEGISQLRDYVTGRDSQQFERLPDGVVSVTVTHNNIRARMIELKFDLHQTVGDIKAKIYTHCGTNPGMQKLVLKSGGQMLAALSDDSKMLGYYGVQSGMEVHVIDDDPFSLSR 342
            AE    +RDYVT  D +Q++RLP G+++V  TH+N+ ARMIELKFDLH TVG++K+K++ HCGT    Q+LVLK GGQ +  LSDDS+MLG+Y V+SGM +H+ID+DP+SLSR
Sbjct:   14 AEMRGAIRDYVTQDDGRQWDRLPQGMIAVHCTHSNVSARMIELKFDLHTTVGEVKSKLHRHCGTPAQFQRLVLKDGGQPICELSDDSRMLGFYSVESGMTIHIIDEDPYSLSR 126
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BLAST of mRNA_P-wetherbeei_contig5427.2.1 vs. uniprot
Match: A0A7S2D093_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D093_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.150e-39
Identity = 60/113 (53.10%), Postives = 87/113 (76.99%), Query Frame = 1 
Query:    4 AEGISQLRDYVTGRDSQQFERLPDGVVSVTVTHNNIRARMIELKFDLHQTVGDIKAKIYTHCGTNPGMQKLVLKSGGQMLAALSDDSKMLGYYGVQSGMEVHVIDDDPFSLSR 342
            AE  + +R+Y+T  D QQ+  LP G+V++  TH+N+  +MIELKFDLH T+GD+KA+++ HCGT    Q+L+L+ GGQ +A L DDSKM+G+Y ++SGM +H+ID DPFS+SR
Sbjct:   14 AEMRTDIRNYITAGDDQQWSGLPQGMVAIHCTHSNLMKKMIELKFDLHTTIGDLKARLHMHCGTPASAQRLILRDGGQDIAHLDDDSKMMGFYSIESGMTIHIIDTDPFSMSR 126
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BLAST of mRNA_P-wetherbeei_contig5427.2.1 vs. uniprot
Match: A0A7S3GWA4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWA4_9STRA)

HSP 1 Score: 135 bits (340), Expect = 7.140e-38
Identity = 57/107 (53.27%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:   22 LRDYVTGRDSQQFERLPDGVVSVTVTHNNIRARMIELKFDLHQTVGDIKAKIYTHCGTNPGMQKLVLKSGGQMLAALSDDSKMLGYYGVQSGMEVHVIDDDPFSLSR 342
            +RDY+T  D  Q+  LPDG+V++ +TH+NI A  ++++ DLH T+GD+K K  TH GT+   Q+L+LKS GQ +  ++DD++MLG+Y V+SGME+HVID DPFSLSR
Sbjct:   11 VRDYITAHDHLQYTTLPDGIVAILLTHSNIPANHVDIRLDLHNTIGDVKEKFRTHIGTHVDHQRLILKSDGQTICEMADDNRMLGFYSVKSGMEIHVIDTDPFSLSR 117
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BLAST of mRNA_P-wetherbeei_contig5427.2.1 vs. uniprot
Match: A0A7S3UUL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUL1_HETAK)

HSP 1 Score: 137 bits (344), Expect = 1.520e-37
Identity = 60/112 (53.57%), Postives = 87/112 (77.68%), Query Frame = 1 
Query:    7 EGISQLRDYVTGRDSQQFERLPDGVVSVTVTHNNIRARMIELKFDLHQTVGDIKAKIYTHCGTNPGMQKLVLKSGGQMLAALSDDSKMLGYYGVQSGMEVHVIDDDPFSLSR 342
            E +  +R++VT +D +Q++ LPDGVVSVT++H+N++ARM+ELKFDLH ++  +K +I TH GT P  Q+L+L+  G+ +  L D   MLGYY V+SGME+HV+DDDP+SLSR
Sbjct:    8 EALRAIRNWVTAKDHEQYQNLPDGVVSVTISHSNLQARMMELKFDLHDSIQTVKERIRTHVGTAPQYQRLILRLNGEEICELGDG--MLGYYSVESGMEIHVVDDDPYSLSR 117
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BLAST of mRNA_P-wetherbeei_contig5427.2.1 vs. uniprot
Match: A0A024TND1_9STRA (CAP-Gly domain-containing protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TND1_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.010e-35
Identity = 53/114 (46.49%), Postives = 82/114 (71.93%), Query Frame = 1 
Query:    1 MAEGISQLRDYVTGRDSQQFERLPDGVVSVTVTHNNIRARMIELKFDLHQTVGDIKAKIYTHCGTNPGMQKLVLKSGGQMLAALSDDSKMLGYYGVQSGMEVHVIDDDPFSLSR 342
            MA+ +  LRDYVT +D  ++  + DG+V + +TH+N+RA +++++ DLH T+  +K K+Y HCGT P    L+LKSG  ++  L D+ +MLGYY VQ GM +HV+D+DPFSL++
Sbjct:    1 MAQDMRALRDYVTAKDGYEYAEVSDGLVCLHITHSNLRATIVDIRLDLHMTLAQVKEKVYRHCGTKPDYMTLILKSGSTVIGTLDDERRMLGYYPVQHGMTLHVVDNDPFSLAK 114
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BLAST of mRNA_P-wetherbeei_contig5427.2.1 vs. uniprot
Match: A0A6A3ZRF9_9STRA (CAP-Gly domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZRF9_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.060e-35
Identity = 56/115 (48.70%), Postives = 86/115 (74.78%), Query Frame = 1 
Query:    1 MAEGISQLRDYVTGRDSQQFERLPDGVVSVTVTHNNIRARMIELKFDLHQTVGDIKAKIYTHCGTNP-GMQKLVLKSGGQMLAALSDDSKMLGYYGVQSGMEVHVIDDDPFSLSR 342
            MA+ +  LR Y+T  D +Q+E LP+GVV + +TH+N++ +M++++ DLH TVG+++ K+Y H GT P  M+ LV++S G + A L DD +MLG+Y V++GM +HV+D DPFSLSR
Sbjct:    1 MAQDMRALRQYITAMDGRQYENLPEGVVCLLITHSNLKLQMMDIRLDLHGTVGELRHKVYQHTGTKPDAMELLVMRSDGSVYARLDDDRRMLGFYSVENGMHLHVVDKDPFSLSR 115
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BLAST of mRNA_P-wetherbeei_contig5427.2.1 vs. uniprot
Match: K3X7H1_GLOUD (CAP-Gly domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7H1_GLOUD)

HSP 1 Score: 131 bits (329), Expect = 2.060e-35
Identity = 57/115 (49.57%), Postives = 85/115 (73.91%), Query Frame = 1 
Query:    1 MAEGISQLRDYVTGRDSQQFERLPDGVVSVTVTHNNIRARMIELKFDLHQTVGDIKAKIYTHCGTNP-GMQKLVLKSGGQMLAALSDDSKMLGYYGVQSGMEVHVIDDDPFSLSR 342
            MAE +  LR+YVT +D  ++E LP+G+V++ +TH+N+R +M++++ DLH T+ +++ K+Y H GT P  M+ L++     +LA L DD KMLGYY VQSGM +HVID DPFSLS+
Sbjct:    1 MAEDLRTLRNYVTAKDGLEYENLPEGMVALHITHSNLRMQMVDIRLDLHLTIAEVRHKVYRHSGTKPDSMELLIMGPDESVLARLDDDRKMLGYYSVQSGMRLHVIDKDPFSLSK 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5427.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGT0_ECTSI3.600e-5470.18Alpha-tubulin folding cofactor n=1 Tax=Ectocarpus ... [more]
A0A6H5KGJ0_9PHAE2.960e-5370.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAK6_9STRA4.550e-4460.53Putative tubulin-specific chaperone B n=1 Tax=Trib... [more]
A0A7S2W9K5_9STRA7.740e-4359.29Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2D093_9STRA1.150e-3953.10Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3GWA4_9STRA7.140e-3853.27Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A7S3UUL1_HETAK1.520e-3753.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024TND1_9STRA1.010e-3546.49CAP-Gly domain-containing protein n=5 Tax=Aphanomy... [more]
A0A6A3ZRF9_9STRA1.060e-3548.70CAP-Gly domain-containing protein n=2 Tax=Phytopht... [more]
K3X7H1_GLOUD2.060e-3549.57CAP-Gly domain-containing protein n=1 Tax=Globispo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5427contigP-wetherbeei_contig5427:2862..3794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGT0
Preferred nameTBCB
PFAMsCAP_GLY,Ubiquitin_2
Model size345
Max annot lvl2759|Eukaryota
KEGG koko:K10423,ko:K17262
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007389,GO:0008150,GO:0009798,GO:0009987,GO:0009994,GO:0015630,GO:0016043,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0030010,GO:0030154,GO:0031122,GO:0032501,GO:0032502,GO:0032504,GO:0034622,GO:0035088,GO:0035089,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0051704,GO:0061162,GO:0061245,GO:0061339,GO:0065003,GO:0071840,GO:0071944,GO:0072686,GO:0097435,GO:0099568
Exons3
Evalue5.9e-55
EggNOG OGsKOG3206@1|root,KOG3206@2759|Eukaryota
Descriptioncell differentiation
Cds size345
COG categoryS
BRITEko00000,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186811.3687081-CDS-P-wetherbeei_contig5427:2861..30141683186811.3687081-CDS-P-wetherbeei_contig5427:2861..3014Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5427 2862..3014 +
1683186811.386936-CDS-P-wetherbeei_contig5427:3167..32541683186811.386936-CDS-P-wetherbeei_contig5427:3167..3254Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5427 3168..3254 +
1683186811.3989596-CDS-P-wetherbeei_contig5427:3689..37941683186811.3989596-CDS-P-wetherbeei_contig5427:3689..3794Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5427 3690..3794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5427.2.1prot_P-wetherbeei_contig5427.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5427 2862..3794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5427.2.1

>prot_P-wetherbeei_contig5427.2.1 ID=prot_P-wetherbeei_contig5427.2.1|Name=mRNA_P-wetherbeei_contig5427.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MAEGISQLRDYVTGRDSQQFERLPDGVVSVTVTHNNIRARMIELKFDLHQ
TVGDIKAKIYTHCGTNPGMQKLVLKSGGQMLAALSDDSKMLGYYGVQSGM
EVHVIDDDPFSLSR*
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mRNA from alignment at P-wetherbeei_contig5427:2862..3794+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5427.2.1 ID=mRNA_P-wetherbeei_contig5427.2.1|Name=mRNA_P-wetherbeei_contig5427.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=933bp|location=Sequence derived from alignment at P-wetherbeei_contig5427:2862..3794+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGAGGGAATATCGCAGCTCCGTGATTATGTGACGGGGAGGGATTC
GCAGCAGTTCGAAAGGTTACCTGACGGCGTCGTGTCTGTCACGGTGACAC
ATAACAACATCAGGGCGCGAATGATCGAGCTGAAGTTCGACTTGCACCAA
ACAGTGAGCTCCGCTGCCTCGAAGTCGCCGCCGTTCCTTCCTAAACTCCC
ATTTATTCTTGGCCTACTGTTCAAAGACTGCGACCTCTCCATTGTCGGCC
TGCAATGCCGTTTTGCACCTTTTCAACGTTGCCCCTGGACCTCGCTTCTT
GTTCAGGTCGGCGATATCAAGGCGAAAATATACACCCACTGTGGGACGAA
CCCAGGGATGCAAAAACTAGTTCTCAAATCAGGGGGCCAAATGGTGCGTT
CCCGCTTTCGCGTATTGCTTGCCAAGTGTTAGAATCATTTGCAGAGCATT
CTGTGGGATTGCCACAATCCATTTTGTGTTCTACTATCTTTTCATTTGCT
CTTGGTGGGCATTCGATGTCCAGCCTCGCTCCCCAAACATCTCCGCTAAA
AGCGTCCAGCCCTCCCATGGATGCTCAATGCGTACCCATCTGATCCCAGA
GCCTCGCAACATCACACGACCATCTGACCTGCCGCGCGACGCTAAATAAT
CTTTCTCTCTATGGCACCTTCCGTCGATCTGCCTCACGCTGCATCGAACA
CCCCCACCGCCATCGCTCTCCGCACCCATTCGTCGCACTGGTCGCTCGCC
ACGGCCGTCTTCATCGCCCGCCGGCGCCGTCGCCCTCGCACACCTCGCCC
GGTGGAAAAATGGTCCTCTCTTTGCCAGCTGGCAGCGCTGTCAGATGACT
CAAAGATGCTGGGCTACTACGGCGTGCAGTCGGGCATGGAGGTTCACGTC
ATTGATGACGACCCCTTCTCGCTCTCCCGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5427:2862..3794+

>mRNA_P-wetherbeei_contig5427.2.1 ID=mRNA_P-wetherbeei_contig5427.2.1|Name=mRNA_P-wetherbeei_contig5427.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig5427:2862..3794+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGAGGGAATATCGCAGCTCCGTGATTATGTGACGGGGAGGGATTC
GCAGCAGTTCGAAAGGTTACCTGACGGCGTCGTGTCTGTCACGGTGACAC
ATAACAACATCAGGGCGCGAATGATCGAGCTGAAGTTCGACTTGCACCAA
ACAGTCGGCGATATCAAGGCGAAAATATACACCCACTGTGGGACGAACCC
AGGGATGCAAAAACTAGTTCTCAAATCAGGGGGCCAAATGCTGGCAGCGC
TGTCAGATGACTCAAAGATGCTGGGCTACTACGGCGTGCAGTCGGGCATG
GAGGTTCACGTCATTGATGACGACCCCTTCTCGCTCTCCCGGTGA
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