mRNA_P-wetherbeei_contig54267.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54267.1.1
Unique NamemRNA_P-wetherbeei_contig54267.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54267.1.1 vs. uniprot
Match: A0A7X9AFH1_9BURK (Type IV pilus assembly protein PilM n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AFH1_9BURK)

HSP 1 Score: 242 bits (617), Expect = 1.250e-76
Identity = 122/172 (70.93%), Postives = 150/172 (87.21%), Query Frame = 1
Query:    7 TVALLNLGASSCSINIFKQGALRHNRTISVAGNSFTKAIGQALNLSFEEAEKIKKEKGVIKVDKDPTPLPPTTMRIFSVIGPVLSELVTEIQRSFDYYRSRYKFEGVENVVLCGGTSKFKNIDVFLSNELKVKCELANPFKAINTAKLQGVSAEELADLAPMAMVVAGLALR 522
            T+AL+NLGASS SINIF  G LRHNRTI+VAGN+FTKAIGQ+LNLSFEEAEKIKKEKGVI+V+KD TP+ PTTMRIF+VI PVL+ELVTEIQRSFDYYR+R++ E V+ V+L GGT+KFKNID+F+S+EL + C++ANPF+ I+   +QG+  ++L  LAPMAMVV GLALR
Sbjct:  193 TIALINLGASSSSINIFNDGTLRHNRTITVAGNNFTKAIGQSLNLSFEEAEKIKKEKGVIRVEKDATPVAPTTMRIFNVIIPVLTELVTEIQRSFDYYRNRFRGESVDLVILSGGTAKFKNIDIFISSELSIDCQIANPFRNISIQNVQGILPDDLEALAPMAMVVTGLALR 364          
BLAST of mRNA_P-wetherbeei_contig54267.1.1 vs. uniprot
Match: A0A7Z9Q194_9BACT (Type IV pilus assembly protein PilM n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9Q194_9BACT)

HSP 1 Score: 204 bits (520), Expect = 2.460e-62
Identity = 106/172 (61.63%), Postives = 136/172 (79.07%), Query Frame = 1
Query:    7 TVALLNLGASSCSINIFKQGALRHNRTISVAGNSFTKAIGQALNLSFEEAEKIKKEKGVIKVDKDPTPLPPTTMRIFSVIGPVLSELVTEIQRSFDYYRSRYKFEGVENVVLCGGTSKFKNIDVFLSNELKVKCELANPFKAINTAKLQGVSAEELADLAPMAMVVAGLALR 522
            TV L+N GAS  SINIF  G L+HNRTISVAGNSFTKAIGQ+LN+SF+EAEKIKKEKGVIKVD     + PTT +IF+++ PVL + VTE+QRS DYYRSR K E ++ VVL GGT+ FKNI+ +LS E  V+C +A+PF  +N +K++G+++ EL +LAP +MVV GLAL+
Sbjct:  168 TVVLVNCGASFSSINIFSAGRLKHNRTISVAGNSFTKAIGQSLNVSFDEAEKIKKEKGVIKVDGGAEDVAPTTQKIFNLVEPVLKDFVTEVQRSIDYYRSRNKDESIDLVVLSGGTAAFKNIESYLSKEFGVECVVADPFSNLNLSKVKGMTSSELRELAPASMVVLGLALQ 339          
BLAST of mRNA_P-wetherbeei_contig54267.1.1 vs. uniprot
Match: A0A2W5YWL3_9BACT (FtsA domain-containing protein n=1 Tax=Candidatus Eremiobacter sp. RRmetagenome_bin22 TaxID=2599629 RepID=A0A2W5YWL3_9BACT)

HSP 1 Score: 147 bits (370), Expect = 1.450e-39
Identity = 80/175 (45.71%), Postives = 116/175 (66.29%), Query Frame = 1
Query:    1 ESTVALLNLGASSCSINIFKQGALRHNRTISVAGNSFTKAIGQALNLSFEEAEKIKKEKGVIKVDKDPTPLPPTTMRIFSVIGPVLSELVTEIQRSFDYYRSRYKFEGVENVVLCGGTSKFKNIDVFLSNELKVKCELANPFKAINTAKLQGVSAEELADLAPMAMVVAGLALRE 525
            E  VA++N+G SS SIN+ K G +   R + + GN+ TKAI   LN+S E+AEK+K+EK  I   +D  P+PPT  RIF+VI P L+ELVTEI +S DY+R+R++ E +++V+L GG+S+ +N+D FLS+EL +   LANP +  +T       A+ L D  P  +V AGL  R+
Sbjct:  189 EQNVAIINVGGSSTSINVTKAGFVPFTRNVPIGGNAITKAIANGLNVSNEDAEKMKREKARILSQQDTGPVPPTVTRIFNVITPPLTELVTEIHKSLDYFRTRFRGETIQSVMLGGGSSRLENLDAFLSHELGLPVSLANPLER-STHNAADFPADFLRDAGPSMIVAAGLGKRD 362          
BLAST of mRNA_P-wetherbeei_contig54267.1.1 vs. uniprot
Match: A0A7C4Q4D4_9BACT (Type IV pilus assembly protein PilM n=3 Tax=bacterium TaxID=1869227 RepID=A0A7C4Q4D4_9BACT)

HSP 1 Score: 120 bits (301), Expect = 1.990e-29
Identity = 65/150 (43.33%), Postives = 97/150 (64.67%), Query Frame = 1
Query:    7 TVALLNLGASSCSINIFKQGALRHNRTISVAGNSFTKAIGQALNLSFEEAEKIKKEKGVIKVDKD------PTPLPPTTMRIFSVIGPVLSELVTEIQRSFDYYRSRYKFEGVENVVLCGGTSKFKNIDVFLSNELKVKCELANPFKAIN 438
            TVAL+N+GA   S+ I + G    +R I++ GN+FTK I +  NLSF +AE++KK++ VI V+ +      P+     +++IF  I P L++L+ +I+RSFDYY S  K + V+ ++L GG+SK KNID FLS  L +  E+  PFK IN
Sbjct:  193 TVALINIGARFTSVTIVENGIPHFSRDINIGGNNFTKEIQREFNLSFAQAEELKKQQAVIMVESEEILLTTPSTEDSKSVKIFEAITPALNKLLNDIRRSFDYYESTVKKKPVQKILLSGGSSKIKNIDRFLSERLGIPVEINFPFKNIN 342          
BLAST of mRNA_P-wetherbeei_contig54267.1.1 vs. uniprot
Match: A0A7C3YUE6_9BACT (Type IV pilus assembly protein PilM n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C3YUE6_9BACT)

HSP 1 Score: 119 bits (299), Expect = 3.210e-29
Identity = 72/180 (40.00%), Postives = 108/180 (60.00%), Query Frame = 1
Query:    7 TVALLNLGASSCSINIFKQGALRHNRTISVAGNSFTKAIGQALNLSFEEAEKIKKEKGVIKVDKDPTPLP--PT----TMRIFSVIGPVLSELVTEIQRSFDYYRSRYKFEGVENVVLCGGTSKFKNIDVFLSNELKVKCELANPFKAINTAKLQGVSAEELADLAPMAMVVAGLALREV 528
            TVALLN GA   ++NI + G  R +R I + G + T+ I +  N+SF EAEK+K+E+G I ++ +   L   PT    ++RIFS I P LS+L+ E++R+FD+Y S  K   +  ++L GG+SK KNID F+S  L+V  E+ NPF  I    +  +  E++  L     V  GL++R V
Sbjct:  183 TVALLNFGAKYTNLNILEDGITRFSRDIPIGGINLTRDIQREFNISFSEAEKLKREEGSIIIESEDIVLTRIPTKEDKSIRIFSSISPTLSKLMLEVRRAFDFYESTSKKRSISKILLSGGSSKLKNIDKFISERLRVPVEMHNPFTNIEIEDITSLD-EKIKQLDLYMPVSVGLSIRRV 361          
BLAST of mRNA_P-wetherbeei_contig54267.1.1 vs. uniprot
Match: A0A7C1D9C1_9BACT (Type IV pilus assembly protein PilM n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C1D9C1_9BACT)

HSP 1 Score: 112 bits (280), Expect = 2.260e-26
Identity = 62/151 (41.06%), Postives = 93/151 (61.59%), Query Frame = 1
Query:    7 TVALLNLGASSCSINIFKQGALRHNRTISVAGNSFTKAIGQALNLSFEEAEKIKKEKGVIKVDKDPTPL-------PPTTMRIFSVIGPVLSELVTEIQRSFDYYRSRYKFEGVENVVLCGGTSKFKNIDVFLSNELKVKCELANPFKAIN 438
            TVAL+N+GA   ++ I ++G     R +++ GN+FTK I +  NLSF +AE++KK++  I V+ +   L            RI+  I P L++L+ +I+RSFD+Y S  K + V+ V++ GG+SK KNID FLS  L V  E+  PFK IN
Sbjct:  195 TVALINMGAKFTTVTILEKGIPHLTRDVNIGGNNFTKEIQREFNLSFAQAEELKKQQAAIMVESEALLLGGMPGGGDDKASRIYEAITPALNKLLNDIRRSFDFYESSIKKKPVQKVLISGGSSKIKNIDRFLSERLGVPVEVNYPFKNIN 345          
BLAST of mRNA_P-wetherbeei_contig54267.1.1 vs. uniprot
Match: A0A1Q7P9J0_9BACT (FtsA domain-containing protein n=3 Tax=Terrabacteria group TaxID=1783272 RepID=A0A1Q7P9J0_9BACT)

HSP 1 Score: 111 bits (277), Expect = 4.370e-26
Identity = 65/174 (37.36%), Postives = 100/174 (57.47%), Query Frame = 1
Query:    1 ESTVALLNLGASSCSINIFKQGALRHNRTISVAGNSFTKAIGQALNLSFEEAEKIKKEKGVIKVDKDPTPLPPTTMRIFSVIGPVLSELVTEIQRSFDYYRSRYKFEGVENVVLCGGTSKFKNIDVFLSNELKVKCELANPFKAINTAKLQGVSAEELADLAPMAMVVAGLALR 522
            + T+  ++LGA S  I I +   LR  R IS  GN+ TKAI +A++L    A+ +K+E+  + ++    P   T   +   I PV++ + TE++RS DYY++R + + +  VVL GGT+K +N+  FLS EL +  E+ANPF          V  + L ++APM  V  GLALR
Sbjct:  181 QGTIVYVDLGAESSDIIIMEADRLRLARNISTGGNAVTKAIAEAMSLEIPAAQALKEERAQLLLEGQ-QPQDTTITHLHEAILPVVNSIFTEVRRSLDYYQTRSRGQTISKVVLTGGTAKLRNLPAFLSEELGLPVEIANPFATFKAEP--AVQKDYLTEIAPMMAVAVGLALR 351          
BLAST of mRNA_P-wetherbeei_contig54267.1.1 vs. uniprot
Match: A0A2N1W6F0_9BACT (FtsA domain-containing protein n=2 Tax=Bacteria candidate phyla TaxID=1783234 RepID=A0A2N1W6F0_9BACT)

HSP 1 Score: 109 bits (272), Expect = 3.200e-25
Identity = 60/151 (39.74%), Postives = 91/151 (60.26%), Query Frame = 1
Query:    7 TVALLNLGASSCSINIFKQGALRHNRTISVAGNSFTKAIGQALNLSFEEAEKIKKEKGVIKVDKD-------PTPLPPTTMRIFSVIGPVLSELVTEIQRSFDYYRSRYKFEGVENVVLCGGTSKFKNIDVFLSNELKVKCELANPFKAIN 438
            TVAL+N+G+   +I I +      +R + + GNS TK I +  N+SF +AE++KK++ VI V+         P      + RIF  I P L++++ +I+R+FDYY S  K + V+ ++L GGTSK KNID FLS  L +  E+  PFK +N
Sbjct:  194 TVALINMGSKLTTITITENNIPHLSRDVGIGGNSLTKEIQRDFNISFAQAEELKKQQAVIMVESXXXXXSSMPGGEDDKSSRIFEAITPALNKMLNDIRRAFDYYESTVKRKPVQKILLSGGTSKIKNIDRFLSERLGIPVEINYPFKNVN 344          
BLAST of mRNA_P-wetherbeei_contig54267.1.1 vs. uniprot
Match: A0A1V5V8E0_9BACT (Cell division protein FtsA n=1 Tax=bacterium ADurb.Bin236 TaxID=1866925 RepID=A0A1V5V8E0_9BACT)

HSP 1 Score: 107 bits (268), Expect = 1.590e-24
Identity = 62/173 (35.84%), Postives = 96/173 (55.49%), Query Frame = 1
Query:    7 TVALLNLGASSCSINIFKQGALRHNRTISVAGNSFTKAIGQALNLSFEEAEKIKKEKGVIKVDKDPTPLPPTTMRIFSVIGPVLSELVTEIQRSFDYYRSRYKFEGVENVVLCGGTSKFKNIDVFLSNELKVKCELANPFKAINTAKLQGVSAEELADLAPMAMVVAGLALRE 525
            T  L+++GA+S S+NI K G LR  R  +V G++ T AI     L++ EAEK+K+EK V  +D++  P+         ++ P +  L  EI+RS  YY S+Y+ EGV  ++L GG S  + +  F   +L +    ANP K  N   +  +  E +A +AP   V  GLA+R+
Sbjct:  198 TFLLIDMGATSTSLNILKNGVLRFTRVFAVGGDTLTHAIESGYGLTYLEAEKLKREKAVAFIDEERAPITEEERDAHELVRPHIETLALEIRRSLAYYTSKYRGEGVTKILLTGGGSLLRGVAAFFEEDLGIPVAHANPLK--NIFYIGDMKDEAVAKMAPYMGVALGLAMRQ 368          
BLAST of mRNA_P-wetherbeei_contig54267.1.1 vs. uniprot
Match: A0A2V9ML40_9BACT (Pilus assembly protein PilM (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9ML40_9BACT)

HSP 1 Score: 101 bits (252), Expect = 8.200e-24
Identity = 63/172 (36.63%), Postives = 95/172 (55.23%), Query Frame = 1
Query:    7 TVALLNLGASSCSINIFKQGALRHNRTISVAGNSFTKAIGQALNLSFEEAEKIKKEKGVIKVDKDPTPLPPTTMRIFSVIGPVLSELVTEIQRSFDYYRSRYKFEGVENVVLCGGTSKFKNIDVFLSNELKVKCELANPFKAINTAKLQGVSAEELADLAPMAMVVAGLALR 522
            TVALLN+GAS  +I + K G     R +S  GN FT  + + LNLSFEEAE++KK K +  ++         T  I S++  V   L+ EIQ++FD++R+    E ++ + + GG +        L N   +  EL NPFK I+  K  G+++  L +++P   V  GLALR
Sbjct:   27 TVALLNIGASIMNIVVTKGGTPLFTRDVSAGGNQFTDVLQKELNLSFEEAEQLKKGKSIAGIE---------TANINSLLQSVAEVLLLEIQKTFDFFRATSIGEHIQRIYVSGGCANVTGFLGLLQNRFSMPVELLNPFKNISVGK--GIASSYLEEISPSMAVAVGLALR 187          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54267.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9AFH1_9BURK1.250e-7670.93Type IV pilus assembly protein PilM n=1 Tax=Burkho... [more]
A0A7Z9Q194_9BACT2.460e-6261.63Type IV pilus assembly protein PilM n=1 Tax=Phycis... [more]
A0A2W5YWL3_9BACT1.450e-3945.71FtsA domain-containing protein n=1 Tax=Candidatus ... [more]
A0A7C4Q4D4_9BACT1.990e-2943.33Type IV pilus assembly protein PilM n=3 Tax=bacter... [more]
A0A7C3YUE6_9BACT3.210e-2940.00Type IV pilus assembly protein PilM n=1 Tax=bacter... [more]
A0A7C1D9C1_9BACT2.260e-2641.06Type IV pilus assembly protein PilM n=1 Tax=bacter... [more]
A0A1Q7P9J0_9BACT4.370e-2637.36FtsA domain-containing protein n=3 Tax=Terrabacter... [more]
A0A2N1W6F0_9BACT3.200e-2539.74FtsA domain-containing protein n=2 Tax=Bacteria ca... [more]
A0A1V5V8E0_9BACT1.590e-2435.84Cell division protein FtsA n=1 Tax=bacterium ADurb... [more]
A0A2V9ML40_9BACT8.200e-2436.63Pilus assembly protein PilM (Fragment) n=1 Tax=Aci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54267contigP-wetherbeei_contig54267:2..529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1499967.BAYZ01000068_gene1962
Preferred namepilM
PFAMsPilM_2
Model size528
Max annot lvl2|Bacteria
KEGG koko:K02662
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.47e-20
EggNOG OGsCOG4972@1|root,COG4972@2|Bacteria,2NPF6@2323|unclassified Bacteria
DescriptionType IV pilus assembly protein PilM;
Cds size528
COG categoryNU
BRITEko00000,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186811.187207-CDS-P-wetherbeei_contig54267:1..5291683186811.187207-CDS-P-wetherbeei_contig54267:1..529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54267 2..529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54267.1.1prot_P-wetherbeei_contig54267.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54267 2..529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54267.1.1

>prot_P-wetherbeei_contig54267.1.1 ID=prot_P-wetherbeei_contig54267.1.1|Name=mRNA_P-wetherbeei_contig54267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
ESTVALLNLGASSCSINIFKQGALRHNRTISVAGNSFTKAIGQALNLSFE
EAEKIKKEKGVIKVDKDPTPLPPTTMRIFSVIGPVLSELVTEIQRSFDYY
RSRYKFEGVENVVLCGGTSKFKNIDVFLSNELKVKCELANPFKAINTAKL
QGVSAEELADLAPMAMVVAGLALREV
back to top

mRNA from alignment at P-wetherbeei_contig54267:2..529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54267.1.1 ID=mRNA_P-wetherbeei_contig54267.1.1|Name=mRNA_P-wetherbeei_contig54267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig54267:2..529- (Phaeothamnion wetherbeei SAG_119_79)
GAGTCCACCGTGGCTCTCCTTAATTTGGGAGCCAGCTCTTGTAGTATCAA TATATTCAAGCAAGGGGCGCTACGCCATAACCGAACCATTTCAGTCGCTG GTAACAGTTTTACCAAGGCAATTGGTCAGGCGTTAAATTTGTCTTTTGAA GAAGCAGAAAAGATAAAAAAGGAGAAGGGTGTCATTAAGGTCGATAAGGA CCCGACCCCTCTCCCGCCCACGACAATGCGAATATTTAGTGTAATCGGTC CGGTTCTTAGCGAACTGGTAACAGAAATTCAGCGTTCCTTCGATTATTAT CGTTCTCGTTACAAGTTCGAGGGTGTTGAAAATGTTGTTTTGTGCGGGGG AACTTCAAAGTTCAAAAATATCGACGTATTCCTTTCCAATGAACTCAAAG TTAAGTGCGAGCTTGCGAATCCGTTCAAAGCGATAAATACTGCAAAATTG CAGGGTGTCTCTGCGGAAGAGTTAGCAGACCTTGCTCCAATGGCCATGGT GGTCGCGGGGTTAGCATTGCGGGAGGTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig54267:2..529-

>mRNA_P-wetherbeei_contig54267.1.1 ID=mRNA_P-wetherbeei_contig54267.1.1|Name=mRNA_P-wetherbeei_contig54267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig54267:2..529- (Phaeothamnion wetherbeei SAG_119_79)
GAGTCCACCGTGGCTCTCCTTAATTTGGGAGCCAGCTCTTGTAGTATCAA
TATATTCAAGCAAGGGGCGCTACGCCATAACCGAACCATTTCAGTCGCTG
GTAACAGTTTTACCAAGGCAATTGGTCAGGCGTTAAATTTGTCTTTTGAA
GAAGCAGAAAAGATAAAAAAGGAGAAGGGTGTCATTAAGGTCGATAAGGA
CCCGACCCCTCTCCCGCCCACGACAATGCGAATATTTAGTGTAATCGGTC
CGGTTCTTAGCGAACTGGTAACAGAAATTCAGCGTTCCTTCGATTATTAT
CGTTCTCGTTACAAGTTCGAGGGTGTTGAAAATGTTGTTTTGTGCGGGGG
AACTTCAAAGTTCAAAAATATCGACGTATTCCTTTCCAATGAACTCAAAG
TTAAGTGCGAGCTTGCGAATCCGTTCAAAGCGATAAATACTGCAAAATTG
CAGGGTGTCTCTGCGGAAGAGTTAGCAGACCTTGCTCCAATGGCCATGGT
GGTCGCGGGGTTAGCATTGCGGGAGGTC
back to top