mRNA_P-wetherbeei_contig54243.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54243.1.1
Unique NamemRNA_P-wetherbeei_contig54243.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54243.1.1 vs. uniprot
Match: A0A7S4MRM6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MRM6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.460e-9
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    4 SNGNGRGSRLTSMQWANEASASLLLVGSDDGVVRVWDSLLEAGYG 138
            SNGN +GSR+TS  W NE + SLLL GSDDG VRVWD +L+ G+G
Sbjct: 1416 SNGNPKGSRMTSASWMNEMTTSLLLAGSDDGTVRVWDGILD-GFG 1459          
BLAST of mRNA_P-wetherbeei_contig54243.1.1 vs. uniprot
Match: A0A836CAT4_9STRA (Raptor_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAT4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.550e-9
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 1
Query:    7 NGNGRGSRLTSMQWANEASASLLLVGSDDGVVRVWDSLLEAG 132
            NG+  G+R+T++ W N A+ SLLLVGSDDGVVR+WD L+E G
Sbjct: 1356 NGHPCGARMTALHWLNPAARSLLLVGSDDGVVRIWDGLVEGG 1397          
BLAST of mRNA_P-wetherbeei_contig54243.1.1 vs. uniprot
Match: A0A7S1XT27_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XT27_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.350e-8
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 1
Query:    1 VSNGNGRGSRLTSMQWANEASASLLLVGSDDGVVRVWDSLLE 126
            ++NGN  G+R+TS++W N  + SLLLV SDDGVVRVWD +L+
Sbjct:  118 LNNGNAYGTRMTSLKWINPETKSLLLVCSDDGVVRVWDGMLD 159          
BLAST of mRNA_P-wetherbeei_contig54243.1.1 vs. uniprot
Match: A0A7S2U9H4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9H4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.500e-8
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query:    7 NGNGRGSRLTSMQWANEASASLLLVGSDDGVVRVWDSLLE 126
            NGN + SR TS+ W NE S SLL+ GSDDG VRVWD +++
Sbjct:   73 NGNAKDSRTTSISWINEMSTSLLITGSDDGSVRVWDGIIK 112          
BLAST of mRNA_P-wetherbeei_contig54243.1.1 vs. uniprot
Match: A0A7S4QVF6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QVF6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.230e-8
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    4 SNGNGRGSRLTSMQWANEASASLLLVGSDDGVVRVWDSLLE 126
            SN N + SR+TS+ W NE S SLLL GSDDGVVR+W+ L+E
Sbjct:  302 SNRNPKKSRITSISWINEMSTSLLLTGSDDGVVRIWEGLIE 342          
BLAST of mRNA_P-wetherbeei_contig54243.1.1 vs. uniprot
Match: A0A7S1YZH6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YZH6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.240e-8
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    4 SNGNGRGSRLTSMQWANEASASLLLVGSDDGVVRVWDSLLE 126
            SN N + SR+TS+ W NE S SLLL GSDDGVVR+W+ L+E
Sbjct:  634 SNRNPKKSRITSISWINEMSTSLLLTGSDDGVVRIWEGLIE 674          
BLAST of mRNA_P-wetherbeei_contig54243.1.1 vs. uniprot
Match: A0A7S2P9P3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P9P3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.170e-7
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    4 SNGNGRGSRLTSMQWANEASASLLLVGSDDGVVRVWDSLLEA 129
            SN N +G+R+T+ QW NEA++SLLL GS+DG VR++D LLEA
Sbjct: 1494 SNENPKGTRMTAAQWVNEATSSLLLTGSNDGSVRIFDGLLEA 1535          
BLAST of mRNA_P-wetherbeei_contig54243.1.1 vs. uniprot
Match: A0A3P3YLQ5_PLABS (Raptor_N domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YLQ5_PLABS)

HSP 1 Score: 53.9 bits (128), Expect = 4.080e-7
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1
Query:    1 VSNGNGRGSRLTSMQWANEASASLLLVGSDDGVVRVWDSLLEA 129
            ++NGN RGS +TS+QW N    SL+ VGSDDGVVRVW +  +A
Sbjct:  880 ITNGNTRGSAITSLQWLNPKHVSLVAVGSDDGVVRVWRNCHDA 922          
BLAST of mRNA_P-wetherbeei_contig54243.1.1 vs. uniprot
Match: A0A4D9DFT2_9STRA (Raptor_N domain-containing protein n=5 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DFT2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.020e-6
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1
Query:   19 RGSRLTSMQWANEASASLLLVGSDDGVVRVWDSLLEAG 132
            + SR+TS+ W NEA++SLLL G+D+GVVRVW  ++  G
Sbjct: 1542 KASRITSLAWLNEATSSLLLTGTDEGVVRVWSGVVPTG 1579          
BLAST of mRNA_P-wetherbeei_contig54243.1.1 vs. uniprot
Match: B8CBK6_THAPS (Raptor_N domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBK6_THAPS)

HSP 1 Score: 48.5 bits (114), Expect = 3.290e-5
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 1
Query:    4 SNGNGRGSRLTSMQWANEASASLLLVGSDDGVVRVWDSLLE 126
            SN N + +R+T+  W NE + SLLL GS+DG VR+WD L E
Sbjct: 1442 SNENPKQTRMTAAAWINETNTSLLLTGSNDGSVRIWDGLFE 1482          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54243.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7S4MRM6_9STRA1.460e-964.44Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A836CAT4_9STRA9.550e-961.90Raptor_N domain-containing protein n=1 Tax=Tribone... [more]
A0A7S1XT27_9STRA2.350e-859.52Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2U9H4_9STRA4.500e-860.00Hypothetical protein (Fragment) n=2 Tax=Attheya se... [more]
A0A7S4QVF6_9STRA6.230e-863.41Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1YZH6_9STRA6.240e-863.41Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2P9P3_9STRA1.170e-761.90Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A3P3YLQ5_PLABS4.080e-758.14Raptor_N domain-containing protein n=2 Tax=Plasmod... [more]
A0A4D9DFT2_9STRA5.020e-655.26Raptor_N domain-containing protein n=5 Tax=Monodop... [more]
B8CBK6_THAPS3.290e-553.66Raptor_N domain-containing protein n=1 Tax=Thalass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54243contigP-wetherbeei_contig54243:101..244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIL7
PFAMsRaptor_N,WD40
Model size144
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.34e-07
EggNOG OGsKOG1517@1|root,KOG1517@2759|Eukaryota
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-27_000220.1
DescriptionTOR signaling
Cds size144
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186811.0369-CDS-P-wetherbeei_contig54243:100..2441683186811.0369-CDS-P-wetherbeei_contig54243:100..244Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54243 101..244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54243.1.1prot_P-wetherbeei_contig54243.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54243 101..244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54243.1.1

>prot_P-wetherbeei_contig54243.1.1 ID=prot_P-wetherbeei_contig54243.1.1|Name=mRNA_P-wetherbeei_contig54243.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=48bp
VSNGNGRGSRLTSMQWANEASASLLLVGSDDGVVRVWDSLLEAGYGAA
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mRNA from alignment at P-wetherbeei_contig54243:101..244-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54243.1.1 ID=mRNA_P-wetherbeei_contig54243.1.1|Name=mRNA_P-wetherbeei_contig54243.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig54243:101..244- (Phaeothamnion wetherbeei SAG_119_79)
GTGAGCAACGGGAACGGGCGCGGCAGCCGGCTGACGTCGATGCAGTGGGC CAACGAGGCTAGCGCATCGCTGCTGCTGGTCGGCTCCGACGACGGCGTTG TGCGCGTGTGGGACTCGCTCCTCGAGGCCGGCTACGGTGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54243:101..244-

>mRNA_P-wetherbeei_contig54243.1.1 ID=mRNA_P-wetherbeei_contig54243.1.1|Name=mRNA_P-wetherbeei_contig54243.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig54243:101..244- (Phaeothamnion wetherbeei SAG_119_79)
GTGAGCAACGGGAACGGGCGCGGCAGCCGGCTGACGTCGATGCAGTGGGC
CAACGAGGCTAGCGCATCGCTGCTGCTGGTCGGCTCCGACGACGGCGTTG
TGCGCGTGTGGGACTCGCTCCTCGAGGCCGGCTACGGTGCCGCC
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