mRNA_P-wetherbeei_contig54232.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54232.1.1
Unique NamemRNA_P-wetherbeei_contig54232.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54232.1.1 vs. uniprot
Match: A0A6M0BSJ7_9CYAN (Site-specific DNA-methyltransferase (adenine-specific) (Fragment) n=1 Tax=Okeania sp. SIO2H7 TaxID=2607802 RepID=A0A6M0BSJ7_9CYAN)

HSP 1 Score: 91.3 bits (225), Expect = 4.450e-19
Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    4 QFVEVADHSKMDVFEEAQTYPLVSLFSK-SKQENYDFRVLSYIDEKAPLE-RTFNSSLLGAGDELLLGFILSDKYDITHKVQSQSVAILSAGQINATSTASEAEDF 315
            +F+ V D+S + VF+EA TYP+VS+  K S Q NY F+  +++DE    E R F+S LL    + LLGFILS K+ +T K+   SV++L+AG INATSTA+EA+ F
Sbjct:  669 RFIVVGDYSNVQVFKEAATYPIVSILQKKSNQGNYCFKSFTFVDELDNFEWRKFDSKLLTYLSDRLLGFILSSKFPLTKKIVDNSVSLLNAGIINATSTAAEADAF 774          
BLAST of mRNA_P-wetherbeei_contig54232.1.1 vs. uniprot
Match: A0A419S1W6_9SPHI (Site-specific DNA-methyltransferase (adenine-specific) n=1 Tax=Pelobium manganitolerans TaxID=1842495 RepID=A0A419S1W6_9SPHI)

HSP 1 Score: 85.9 bits (211), Expect = 3.520e-17
Identity = 44/101 (43.56%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   16 VADHSKMDVFEEAQTYPLVSLFSKSKQENYDFRVLSYIDEKAPLE-RTFNSSLLGAGDELLLGFILSDKYDITHKVQSQSVAILSAGQINATSTASEAEDF 315
            + D+S + VF+EA TYP+ +LF KS   +++ +  +++DE  P++ RT+ +  L + ++ +LGF+LS+KY+I  K+ SQSV +   G INATSTA EA+DF
Sbjct:  914 IGDYSNVKVFKEASTYPITTLFKKSPN-HHNLKSFTFVDEHQPIKYRTYRTEDLFSLNDFILGFVLSEKYEIVSKIISQSVPLGKCGIINATSTAKEADDF 1013          
BLAST of mRNA_P-wetherbeei_contig54232.1.1 vs. uniprot
Match: UPI001F4A60AF (Eco57I restriction-modification methylase domain-containing protein n=1 Tax=Belliella sp. DSM 111904 TaxID=2923435 RepID=UPI001F4A60AF)

HSP 1 Score: 81.6 bits (200), Expect = 1.080e-15
Identity = 43/101 (42.57%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   16 VADHSKMDVFEEAQTYPLVSLFSKSKQENYDFRVLSYIDEKAPLE-RTFNSSLLGAGDELLLGFILSDKYDITHKVQSQSVAILSAGQINATSTASEAEDF 315
            + D+S + VF+EA TYP+ +LF K    N++ +  ++IDE  P++ RT+ +  L + ++ +LGF+LS+KY+I  K+ +QS  +   G INATSTA EA+DF
Sbjct:  928 IGDYSNVKVFKEASTYPVTTLFKKLPN-NHNLKSFTFIDEYQPIKFRTYKTEDLFSLNDFILGFVLSEKYEIVSKIITQSEPLGKCGIINATSTAKEADDF 1027          
BLAST of mRNA_P-wetherbeei_contig54232.1.1 vs. uniprot
Match: A0A840EN00_9FLAO (Site-specific DNA-methyltransferase (adenine-specific) n=3 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A840EN00_9FLAO)

HSP 1 Score: 80.5 bits (197), Expect = 2.710e-15
Identity = 42/106 (39.62%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 YQFVEVADHSKMDVFEEAQTYPLVSLFSKSKQENYDFRVLSYID-EKAPLERTFNSSLLGAGDELLLGFILSDKYDITHKVQSQSVAILSAGQINATSTASEAEDF 315
            Y+ + + D+S   VF++A TYP++S   K ++ENY      + +  K  +E  F+S  L   ++ +LGF+L+DK  IT K+ +QS ++ + G+INATSTASEA+D+
Sbjct:  698 YEILSLIDYSDKRVFQDASTYPVISFLKKKERENYKVTTGRFDEISKQIIESKFDSKKLNVLEDYILGFLLNDKLIITEKIINQSESLENVGKINATSTASEADDY 803          
BLAST of mRNA_P-wetherbeei_contig54232.1.1 vs. uniprot
Match: UPI001C2D13D9 (N-6 DNA methylase n=1 Tax=Paeniglutamicibacter sp. ABSL32-1 TaxID=2849498 RepID=UPI001C2D13D9)

HSP 1 Score: 73.2 bits (178), Expect = 9.940e-13
Identity = 43/103 (41.75%), Postives = 67/103 (65.05%), Query Frame = 1
Query:   22 DHSKMDVFEEAQTYPLVSLFSKSKQ---ENYDFRVLSYIDEKAP--LERTFNSSLLGAGDELLLGFILSDKYDITHKVQSQSVAILSAGQINATSTASEAEDF 315
            D+S  +VFE+A TYP+++L  K K    E Y+  +   IDE++   + R F+SS+L   D+ ++GF+L+D+ D+T KV  Q   +  A +INATSTA EA+D+
Sbjct:  674 DYSDKNVFEDASTYPVITLLDKLKPVDGETYEV-MAGRIDEESSQAVTRAFDSSMLTKLDDNIMGFLLNDRIDVTLKVFGQDAPLERAAKINATSTAGEADDY 775          
BLAST of mRNA_P-wetherbeei_contig54232.1.1 vs. uniprot
Match: UPI001F091646 (N-6 DNA methylase n=1 Tax=Tunicatimonas sp. TK19036 TaxID=2867963 RepID=UPI001F091646)

HSP 1 Score: 70.1 bits (170), Expect = 1.200e-11
Identity = 39/101 (38.61%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   16 VADHSKMDVFEEAQTYPLVSLFSKSKQENYDFRVLSYIDEKAPLERTFNSS-LLGAGDELLLGFILSDKYDITHKVQSQSVAILSAGQINATSTASEAEDF 315
            + D+S + VF+EA TYP+++    +K   Y+  +  Y  +++ L   + SS  L   D  L G++L+DK ++T KV +QS+ + +A +INATSTASEAE++
Sbjct:  842 IIDYSNVRVFKEASTYPILTFLEVAKNRKYNILIGKYSHQQSSLNYHYVSSEKLDMLDGYLWGYLLNDKIELTEKVINQSIKLGNACKINATSTASEAENY 942          
BLAST of mRNA_P-wetherbeei_contig54232.1.1 vs. uniprot
Match: K6BAV8_9BACT (Site-specific DNA-methyltransferase (adenine-specific) n=6 Tax=Bacteroidales TaxID=171549 RepID=K6BAV8_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 5.680e-11
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   16 VADHSKMDVFEEAQTYPLVSLFSKSKQ-ENYDFRVLSYIDEKAPLERTFNSSLLGAGDELLLGFILSDKYDITHKVQSQSVAILSAGQINATSTASEAEDF 315
            V D S+  VF+ A TYP+VS+  KS   + Y+F  +    +K  +E  FNSS L    E   GFILS KY +T K+  +S +IL   +INATSTASEA++F
Sbjct:  832 VLDVSRDSVFD-ADTYPVVSIIRKSSDTKTYEFIAI----DKYKIEHKFNSSQLSELPENNWGFILSTKYKLTKKILLKSKSILDVCKINATSTASEADEF 927          
BLAST of mRNA_P-wetherbeei_contig54232.1.1 vs. uniprot
Match: A0A5C4S7W7_CHLTI (Site-specific DNA-methyltransferase (adenine-specific) n=2 Tax=Chlorobaculum thiosulfatiphilum TaxID=115852 RepID=A0A5C4S7W7_CHLTI)

HSP 1 Score: 67.0 bits (162), Expect = 1.380e-10
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 YQFVEVADHSKMDVFEEAQTYPLVSLFSKSKQENYDFRVLSYIDEKAPLE-RTFNSSLLGAGDELLLGFILSDKYDITHKVQSQSVAILSAGQINATSTASEAEDF 315
            Y+   + ++S   VF +A TYP++++ +     +YD     + +     E + F S  L   D+ +LGF+L+DK  IT KV +QS  +  AG INATSTASEA+++
Sbjct:  271 YEIESIVNYSDKKVFPDASTYPIITVLANRSGMDYDVNSGKFNELTKEFEGKPFPSKRLQIIDKSILGFLLNDKLPITEKVINQSDTLAVAGVINATSTASEADEY 376          
BLAST of mRNA_P-wetherbeei_contig54232.1.1 vs. uniprot
Match: A0A7I7UT93_MYCPV (Site-specific DNA-methyltransferase (adenine-specific) n=1 Tax=Mycolicibacterium pulveris TaxID=36813 RepID=A0A7I7UT93_MYCPV)

HSP 1 Score: 63.9 bits (154), Expect = 1.730e-9
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   16 VADHSKMDVFEEAQTYPLVSLFSKSKQENYDFRVLSYIDEKA--PLERTFNSSLLGAGDELLLGFILSDKYDITHKVQSQSVAILSAGQINATSTASEAEDF 315
            + + S   VFE+A TYP+V+  +K K E     +  ++ E+   PL    +S  L    E ++GF+L+DK  +T K+  QS  +   G+INATSTA+EA+++
Sbjct:  701 ILNASDTRVFEDAATYPVVTTMTKGKPERRYRIIAGHLQERTAVPLAVQHDSMKLAVLPENIMGFLLNDKLPLTEKIFEQSEPLDRVGEINATSTAAEADEY 802          
BLAST of mRNA_P-wetherbeei_contig54232.1.1 vs. uniprot
Match: UPI00024A1F53 (Eco57I restriction-modification methylase domain-containing protein n=1 Tax=Mycolicibacterium tusciae TaxID=75922 RepID=UPI00024A1F53)

HSP 1 Score: 62.8 bits (151), Expect = 4.380e-9
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    7 FVEVADHSKMDVFEEAQTYPLVSLFSKSKQENYDFRVLSYIDEK---APLERTFNSSLLGAGDELLLGFILSDKYDITHKVQSQSVAILSAGQINATSTASEAEDF 315
            FV + + S   VFE+A  YP++++ +K K    D+++ +   E+    PL    +S+ L +  + ++GF+L+DK  IT KV  Q+  +   G INATSTA EA+D+
Sbjct:  660 FVSILNASDTQVFEDADVYPVITILTKGKATE-DYKITAGRLEEMTAVPLGMDHDSAKLTSLPDNIMGFLLNDKLPITEKVFGQAERLGVVGDINATSTAGEADDY 764          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54232.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6M0BSJ7_9CYAN4.450e-1949.06Site-specific DNA-methyltransferase (adenine-speci... [more]
A0A419S1W6_9SPHI3.520e-1743.56Site-specific DNA-methyltransferase (adenine-speci... [more]
UPI001F4A60AF1.080e-1542.57Eco57I restriction-modification methylase domain-c... [more]
A0A840EN00_9FLAO2.710e-1539.62Site-specific DNA-methyltransferase (adenine-speci... [more]
UPI001C2D13D99.940e-1341.75N-6 DNA methylase n=1 Tax=Paeniglutamicibacter sp.... [more]
UPI001F0916461.200e-1138.61N-6 DNA methylase n=1 Tax=Tunicatimonas sp. TK1903... [more]
K6BAV8_9BACT5.680e-1145.54Site-specific DNA-methyltransferase (adenine-speci... [more]
A0A5C4S7W7_CHLTI1.380e-1036.79Site-specific DNA-methyltransferase (adenine-speci... [more]
A0A7I7UT93_MYCPV1.730e-936.27Site-specific DNA-methyltransferase (adenine-speci... [more]
UPI00024A1F534.380e-935.85Eco57I restriction-modification methylase domain-c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54232contigP-wetherbeei_contig54232:42..386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog746697.Aeqsu_3121
PFAMsEco57I,N6_Mtase,TaqI_C
Model size345
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.28e-12
EggNOG OGsCOG0827@1|root,COG1002@1|root,COG0827@2|Bacteria,COG1002@2|Bacteria,4NEHR@976|Bacteroidetes,1HYJU@117743|Flavobacteriia
DescriptionRestriction
Cds size345
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186810.9130847-CDS-P-wetherbeei_contig54232:41..3861683186810.9130847-CDS-P-wetherbeei_contig54232:41..386Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54232 42..386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54232.1.1prot_P-wetherbeei_contig54232.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54232 42..386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54232.1.1

>prot_P-wetherbeei_contig54232.1.1 ID=prot_P-wetherbeei_contig54232.1.1|Name=mRNA_P-wetherbeei_contig54232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
YQFVEVADHSKMDVFEEAQTYPLVSLFSKSKQENYDFRVLSYIDEKAPLE
RTFNSSLLGAGDELLLGFILSDKYDITHKVQSQSVAILSAGQINATSTAS
EAEDFRVAEQGCSG*
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mRNA from alignment at P-wetherbeei_contig54232:42..386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54232.1.1 ID=mRNA_P-wetherbeei_contig54232.1.1|Name=mRNA_P-wetherbeei_contig54232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig54232:42..386+ (Phaeothamnion wetherbeei SAG_119_79)
TATCAGTTCGTGGAGGTCGCGGACCACTCGAAAATGGATGTTTTTGAAGA GGCGCAAACTTATCCGCTAGTGTCCTTGTTTAGTAAATCAAAGCAGGAAA ATTATGATTTCAGAGTGTTGAGCTATATCGATGAGAAAGCGCCATTAGAA CGGACTTTCAATTCATCATTGCTCGGGGCCGGAGACGAGCTGCTCTTGGG GTTCATACTTAGCGATAAGTATGACATTACGCATAAAGTGCAGTCGCAGT CGGTAGCAATTCTAAGTGCTGGGCAGATTAATGCGACCAGTACGGCTTCG GAGGCGGAGGATTTCCGAGTTGCAGAGCAAGGCTGCAGCGGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54232:42..386+

>mRNA_P-wetherbeei_contig54232.1.1 ID=mRNA_P-wetherbeei_contig54232.1.1|Name=mRNA_P-wetherbeei_contig54232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig54232:42..386+ (Phaeothamnion wetherbeei SAG_119_79)
TATCAGTTCGTGGAGGTCGCGGACCACTCGAAAATGGATGTTTTTGAAGA
GGCGCAAACTTATCCGCTAGTGTCCTTGTTTAGTAAATCAAAGCAGGAAA
ATTATGATTTCAGAGTGTTGAGCTATATCGATGAGAAAGCGCCATTAGAA
CGGACTTTCAATTCATCATTGCTCGGGGCCGGAGACGAGCTGCTCTTGGG
GTTCATACTTAGCGATAAGTATGACATTACGCATAAAGTGCAGTCGCAGT
CGGTAGCAATTCTAAGTGCTGGGCAGATTAATGCGACCAGTACGGCTTCG
GAGGCGGAGGATTTCCGAGTTGCAGAGCAAGGCTGCAGCGGGTGA
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