mRNA_P-wetherbeei_contig5421.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5421.1.2
Unique NamemRNA_P-wetherbeei_contig5421.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5421.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5421contigP-wetherbeei_contig5421:2..3522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1535
Hectar predicted targeting categoryother localisation
Exons9
Cds size1398
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5421.1.2prot_P-wetherbeei_contig5421.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5421 139..3522 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186810.4844835-UTR-P-wetherbeei_contig5421:1..1381683186810.4844835-UTR-P-wetherbeei_contig5421:1..138Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5421 2..138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186810.4981-CDS-P-wetherbeei_contig5421:138..1671683186810.4981-CDS-P-wetherbeei_contig5421:138..167Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5421 139..167 +
1683186810.5111623-CDS-P-wetherbeei_contig5421:369..8531683186810.5111623-CDS-P-wetherbeei_contig5421:369..853Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5421 370..853 +
1683186810.5246923-CDS-P-wetherbeei_contig5421:1196..13311683186810.5246923-CDS-P-wetherbeei_contig5421:1196..1331Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5421 1197..1331 +
1683186810.537364-CDS-P-wetherbeei_contig5421:1500..17031683186810.537364-CDS-P-wetherbeei_contig5421:1500..1703Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5421 1501..1703 +
1683186810.5476604-CDS-P-wetherbeei_contig5421:1956..22231683186810.5476604-CDS-P-wetherbeei_contig5421:1956..2223Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5421 1957..2223 +
1683186810.558094-CDS-P-wetherbeei_contig5421:2418..24641683186810.558094-CDS-P-wetherbeei_contig5421:2418..2464Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5421 2419..2464 +
1683186810.5680115-CDS-P-wetherbeei_contig5421:2811..29191683186810.5680115-CDS-P-wetherbeei_contig5421:2811..2919Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5421 2812..2919 +
1683186810.578036-CDS-P-wetherbeei_contig5421:3182..32391683186810.578036-CDS-P-wetherbeei_contig5421:3182..3239Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5421 3183..3239 +
1683186810.5888834-CDS-P-wetherbeei_contig5421:3453..35221683186810.5888834-CDS-P-wetherbeei_contig5421:3453..3522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5421 3454..3522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5421.1.2

>prot_P-wetherbeei_contig5421.1.2 ID=prot_P-wetherbeei_contig5421.1.2|Name=mRNA_P-wetherbeei_contig5421.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=466bp
MNFLTTLRDTLTKDYKLLLHIEMCASELLALPQYQRCLRLANALSGSAKL
DPSTSSNLKASLMAEQFEPSDASGGATAAAATAAAATAASLRASIMQQAG
ANRKSTRQLWASTTAAMSSVSSGDNDGELDLNGGGTAGAGGDGIDARAES
EWALFETRKDRLRASLLWAREVSLSLCHKRKHHDLDFELEMHSAESGGEY
TFSADGQIQRQCAIAQAVAKRSLRAHMESRHSKLTSVASEHDYGGGGGGD
TNGKDAHVTDSVRMRSSRRSLELSARHEQTRVLGWLLGRGSDGHGNGGSG
VDAGSGDVGGPAGTYNLSPARLLSFPRSYGRILVVFVALWAHERWEAEFD
MADDLTEEYKAAAKVKLEDELRRRLANGSESFVEVLNEVTLRDYSEKYAE
PLCALILEGRLDEVSFLWHFPGEEVPSDPLRLVLAMKDLLVHKEFFVSCD
EHGWNSYTAVFVDPK*
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mRNA from alignment at P-wetherbeei_contig5421:2..3522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5421.1.2 ID=mRNA_P-wetherbeei_contig5421.1.2|Name=mRNA_P-wetherbeei_contig5421.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3521bp|location=Sequence derived from alignment at P-wetherbeei_contig5421:2..3522+ (Phaeothamnion wetherbeei SAG_119_79)
TCGTTACGAACACTGTATGCGATTTTAAGGAGGTCACGATTCCGTTCTGA
ACTATTCCGGGCGCACCTCGGACGCAGAGACGCAGAGACGCAGAGACACA
GATCAGCAGTTCAAATCCCTTCTTCCACCTCCCAACCATGAACTTCCTCA
CGACGTTGAGAGATACGTAAGTTTCCACTTGCTTCCTAGCGATGGCCCAT
TGTCCGATCAGCTTCCAGCTTTTGCCTCAATCTATCTCAATGCAAAGCAA
TGCATCAGGTACACTTTCCGCTTTTCGCCCGCCTATCGCTCTGGTTGACC
GCCCCTCTTCGTTTGGATGTTCCGATTGGCCACATGACGGTCGCCATCCC
GATCGCCTTGCTGAAAAGGCTTACAAAGGACTACAAACTCTTGCTGCACA
TCGAGATGTGCGCGAGCGAGCTTTTGGCGTTGCCACAGTACCAGCGATGC
CTGCGGCTGGCGAACGCCCTGTCCGGGTCCGCCAAGCTCGATCCGTCCAC
CTCCAGCAACCTGAAGGCGTCGCTCATGGCAGAGCAGTTCGAGCCTTCCG
ACGCCTCCGGCGGCGCGACGGCTGCCGCGGCGACGGCGGCAGCGGCGACG
GCGGCGAGCCTTCGAGCGTCCATAATGCAGCAGGCGGGCGCCAACCGGAA
GTCGACCCGCCAGCTCTGGGCGTCGACCACGGCTGCGATGAGCAGCGTGT
CATCCGGTGACAACGACGGCGAGCTGGACCTGAACGGCGGCGGCACGGCG
GGGGCTGGCGGCGACGGGATCGACGCGCGGGCGGAGAGCGAGTGGGCGCT
GTTCGAGACCCGGAAGGACCGGCTTCGCGCATCGCTGCTCTGGGCCCGCG
AAGTGAGTGTTTCGTGTGTTCACGCTGTCTTGTCAATGTTATTTCTACCT
GCTGCAAAGTCTCACCGTCCTTGTTCCACTTTTGGGGCTATTTGTTGTCG
CCGTTCTAACATCTGGATGCGTGTTCCTGTCCTTCGCTCCATTTTCAGAT
GCATACCCGTTCTGGCAGTCGCGTCCGGCCTCATGCCTGACCCCTTCTTC
CCTTCTTTCTCGATTCCATTTCCATCTCTGAACTTCTCGCGCTGCCGAGT
CCATTCTTCCATGCCGTAGGGGGCACTCCCTCACACATCGTTGCAGTTCC
CCGATGCGTTTCCCCTGCTTTTGTGGCCTTTGGCGTAACTGGCAGGTTTC
GCTGTCGCTGTGCCACAAGCGGAAGCACCACGACCTCGACTTCGAGCTTG
AGATGCACAGCGCCGAGTCGGGCGGCGAGTACACCTTCTCGGCCGACGGA
CAGATCCAGAGGCAGTGCGCCATCGCCCAGGTGAAGTGAAGGCAAGAAAT
GAAAGAGAAGTGTTCGGTAGGAAGAGAGAGGGGGAGAAAGAAGGAAGGCC
TTTTATGGGGGCCTACTTTTTGTCCTTCGCCTGCACTCCGGGAATTCTGG
GCTCAGCTTTCGATATCTGACCGGACTCGGCGCACGGCATCGCTTTCAGG
CGGTGGCAAAGCGGTCCCTGCGGGCGCACATGGAGAGCCGCCACAGCAAA
CTGACCTCGGTGGCGTCCGAACACGACTACGGCGGCGGCGGCGGCGGCGA
TACCAATGGCAAGGATGCGCACGTGACCGACAGCGTGAGGATGCGCAGCA
GCCGCCGGAGCCTCGAGCTTTCGGCGCGGCACGAGCAGACGCGGGTGCTC
GGGTACGATGGAAACGGGCAGAATTGGACAGGAGAGAGGACGGGACTGGA
CCGGTGGTGGGCAAGACTGGATAAGGAAGAGGCAACCGATGCTTCTTTTC
TCTGCTCGTTGTTGCGCGTTGCATGGCACATCTAACCACCTGCTGTGCGC
GCGCCGCTTGCAGCTGTCTTCTGTTTCTTTCGGTTGTTGGCACGCATTCG
TTGCTATGCACTGTGTGTAAAAGTGTCACACTGCCGTCGCGCGTCCTTCT
ATCAGGTGGCTGCTGGGGCGGGGCAGCGACGGCCACGGCAATGGCGGCAG
TGGCGTCGACGCCGGCAGCGGCGACGTCGGCGGCCCGGCGGGAACCTACA
ACCTGTCGCCGGCCCGCCTGCTCTCCTTTCCGCGGTCGTACGGCCGGATC
CTGGTAGTATTTGTGGCGCTGTGGGCGCACGAGCGGTGGGAGGCTGAGTT
CGATATGGCGGACGACCTGACGGAGGAGTACAAGGCCGCGGCCAAGGTCA
AGCTCGAGGATGAGCTGCGCAGGTGGGCAGATTGGGGGGAATTTCCGGGA
AGGGGGAGAACTTTTGGGGGAATTATGTTGTATCTTGTACCTTTAGGGAG
TTGTGTGTGCCGCCGGATCGTATTTCTATGGCTTACGCCCGTGGTTCTTC
TGGGGCAGCGAAAAAAGCCTTTGTAACGAAAAGCCATTCTGGCAAATCTC
CGTCTCGCCCTCCTCAGGAGGCTGGCAAACGGTAGCGAGTCCTTCGTCGA
AGTGCTCAACGAGGTGCGCTGCTTTCCCGAAGACTTCCATCCCGCTGAAT
TCCGGCTGTGACGTTGTTTCCTGAGCCAAATCTTTGCGTTTCAAGACTGA
AGAAGGGAGGCAGGGCCGGGCAAAGCGCAGTGCAGCCCCTGTCGTTCCCC
TGTGGGGGTTTTACATCGGTCGGACAGGGTTGTTTCATCCCTCTGTGCTC
TTGTTTAGTCAGGCCGAACTTGAATGCTCATTCGTCTCCGTTAACACTTA
TCCTGCACATTTTGGCAGCTGTCAGATCCGGAGAATTTGCCTCCTCCTCT
GCTCTCCCTCCTCCCTTGAATCGGATGTGTGTAACGATCGTGTGTAAAAT
CTACCGGCAGGTGACGCTGCGCGACTACAGCGAAAAGTACGCGGAGCCGC
TGTGCGCCCTCATTCTCGAAGGGCGGCTGGACGAGGTGTCCTTCCTCTGG
CACTTCCCCGGGGAGGAGGTGAGATAGTTTCTCATGGGCCGCCGCCGCCG
CCTTAATTGCGGCTGCAGGCCTGCCGTGGTCGCCGTTGCTTGGTGAAGGC
TTGCTGTCGGGAAGTGCTGGTTTTGCCTCTGATCAGGGTGTCACCGCAAC
AGTTGGGAGCGAACTGGCGAGCTTTCCACTTTTTGACTGCATCTATTAGA
CTCGTCCTCTTCCTTGAGGCGTCTCTTAGACAGCGCAGAACCTCATCCTT
TTTTACACATGCTGTACTCGTGTCATGGCAGGTGCCGTCCGACCCTCTCC
GGCTGGTCCTGGCGATGAAGGATTTGCTGGTACACAAGGTGAATGGAGGA
CACATGATCCCCTCCCCCTTCTTATCTCTCTTCTTTTCGCTGCGACTTCT
GTTAGCCATGGTTTTGACACAGTCTGAGAGTGGTACCTGCTTGCCATCTT
GAATGAGATGCTGGTATTGTAAAGATTTCGGCGCAAACATGCCTCTTCCT
CTTCTTCTGCCTCGCCAACCGCATTCGCACGGTACCCGTTGCGCCTCGAC
AGGAGTTCTTCGTCTCGTGCGACGAGCATGGCTGGAATTCGTACACCGCC
GTCTTTGTTGATCCCAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5421:2..3522+

>mRNA_P-wetherbeei_contig5421.1.2 ID=mRNA_P-wetherbeei_contig5421.1.2|Name=mRNA_P-wetherbeei_contig5421.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1398bp|location=Sequence derived from alignment at P-wetherbeei_contig5421:2..3522+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACTTCCTCACGACGTTGAGAGATACGCTTACAAAGGACTACAAACT
CTTGCTGCACATCGAGATGTGCGCGAGCGAGCTTTTGGCGTTGCCACAGT
ACCAGCGATGCCTGCGGCTGGCGAACGCCCTGTCCGGGTCCGCCAAGCTC
GATCCGTCCACCTCCAGCAACCTGAAGGCGTCGCTCATGGCAGAGCAGTT
CGAGCCTTCCGACGCCTCCGGCGGCGCGACGGCTGCCGCGGCGACGGCGG
CAGCGGCGACGGCGGCGAGCCTTCGAGCGTCCATAATGCAGCAGGCGGGC
GCCAACCGGAAGTCGACCCGCCAGCTCTGGGCGTCGACCACGGCTGCGAT
GAGCAGCGTGTCATCCGGTGACAACGACGGCGAGCTGGACCTGAACGGCG
GCGGCACGGCGGGGGCTGGCGGCGACGGGATCGACGCGCGGGCGGAGAGC
GAGTGGGCGCTGTTCGAGACCCGGAAGGACCGGCTTCGCGCATCGCTGCT
CTGGGCCCGCGAAGTTTCGCTGTCGCTGTGCCACAAGCGGAAGCACCACG
ACCTCGACTTCGAGCTTGAGATGCACAGCGCCGAGTCGGGCGGCGAGTAC
ACCTTCTCGGCCGACGGACAGATCCAGAGGCAGTGCGCCATCGCCCAGGC
GGTGGCAAAGCGGTCCCTGCGGGCGCACATGGAGAGCCGCCACAGCAAAC
TGACCTCGGTGGCGTCCGAACACGACTACGGCGGCGGCGGCGGCGGCGAT
ACCAATGGCAAGGATGCGCACGTGACCGACAGCGTGAGGATGCGCAGCAG
CCGCCGGAGCCTCGAGCTTTCGGCGCGGCACGAGCAGACGCGGGTGCTCG
GGTGGCTGCTGGGGCGGGGCAGCGACGGCCACGGCAATGGCGGCAGTGGC
GTCGACGCCGGCAGCGGCGACGTCGGCGGCCCGGCGGGAACCTACAACCT
GTCGCCGGCCCGCCTGCTCTCCTTTCCGCGGTCGTACGGCCGGATCCTGG
TAGTATTTGTGGCGCTGTGGGCGCACGAGCGGTGGGAGGCTGAGTTCGAT
ATGGCGGACGACCTGACGGAGGAGTACAAGGCCGCGGCCAAGGTCAAGCT
CGAGGATGAGCTGCGCAGGAGGCTGGCAAACGGTAGCGAGTCCTTCGTCG
AAGTGCTCAACGAGGTGACGCTGCGCGACTACAGCGAAAAGTACGCGGAG
CCGCTGTGCGCCCTCATTCTCGAAGGGCGGCTGGACGAGGTGTCCTTCCT
CTGGCACTTCCCCGGGGAGGAGGTGCCGTCCGACCCTCTCCGGCTGGTCC
TGGCGATGAAGGATTTGCTGGTACACAAGGAGTTCTTCGTCTCGTGCGAC
GAGCATGGCTGGAATTCGTACACCGCCGTCTTTGTTGATCCCAAGTAA
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