mRNA_P-wetherbeei_contig5420.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5420.1.1
Unique NamemRNA_P-wetherbeei_contig5420.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5420.1.1 vs. uniprot
Match: A0A835ZAD6_9STRA (Homoserine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD6_9STRA)

HSP 1 Score: 194 bits (494), Expect = 3.060e-56
Identity = 98/149 (65.77%), Postives = 114/149 (76.51%), Query Frame = 1
Query:    4 TMPPLRIGMFGGGVVGGGVYEIVETVKKAFFQSIGANVTIVKICVRDASKPRSFVVGAHTTIVTDYEAILGDSSINCVIELMGGTTHAKDVVFEAIRRGKSVITANKALLAEYLPTIRTLLKENAGVSLAYEAAVCGGAYAVRFTRNSF 450
            T  PL IG+FGGG VGGGVYEI E   K F   IGA+V I KICVRD SK R F +GAHTT+V+DY+AIL D SINCV+ELMGG T+AKDVVFEAI+RGK V+TANKALLA+YLP I+ LLK++  V  AYEAAVCGG   +   +N F
Sbjct:    5 TPEPLNIGLFGGGTVGGGVYEICEESNKDFLAGIGADVKISKICVRDTSKARDFSIGAHTTVVSDYKAILEDDSINCVVELMGGVTNAKDVVFEAIKRGKHVVTANKALLAQYLPEIQELLKQHPEVHFAYEAAVCGGIPIINVLQNDF 153          
BLAST of mRNA_P-wetherbeei_contig5420.1.1 vs. uniprot
Match: D8LHG9_ECTSI (Homoserine dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHG9_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.470e-54
Identity = 91/146 (62.33%), Postives = 116/146 (79.45%), Query Frame = 1
Query:   13 PLRIGMFGGGVVGGGVYEIVETVKKAFFQSIGANVTIVKICVRDASKPRSFVVGAHTTIVTDYEAILGDSSINCVIELMGGTTHAKDVVFEAIRRGKSVITANKALLAEYLPTIRTLLKENAGVSLAYEAAVCGGAYAVRFTRNSF 450
            PL++GMFGGG VGGGVYEI+E  KK  F++ G +VTI KICVRD +K RSF +  HTT+VTDY+ IL D SINCV+ELMGG THAKDVVF+A+++GK V+TANKALLA+ LP +++L+ ENAG +L YEAAVCGG   +   + S+
Sbjct:    4 PLKVGMFGGGTVGGGVYEIMEQTKKELFKAGGVDVTIAKICVRDVNKKRSFELEKHTTMVTDYDEILEDDSINCVVELMGGVTHAKDVVFKALKKGKHVVTANKALLAQLLPEVKSLVAENAGTTLGYEAAVCGGIPIIHNMQGSY 149          
BLAST of mRNA_P-wetherbeei_contig5420.1.1 vs. uniprot
Match: A0A835YR06_9STRA (Homoserine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR06_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.590e-52
Identity = 93/134 (69.40%), Postives = 107/134 (79.85%), Query Frame = 1
Query:   16 LRIGMFGGGVVGGGVYEIVETVKKAFFQSIGANVTIVKICVRDASKPRSFVVGAHTTIVTDYEAILGDSSINCVIELMGGTTHAKDVVFEAIRRGKSVITANKALLAEYLPTIRTLLKENAGVSLAYEAAVCGG 417
            LRIGMFGGGVVGGGVYEI+ + K+A F ++G + T+VKICVRD +KPR+F V  HT +VTDY+AIL D SINC+IELMGG THAKDVVFEA++RGK VITANKALLA YLP I  LL       L YEAAVCGG
Sbjct:    5 LRIGMFGGGVVGGGVYEILTSRKQAAFAAMGIDATVVKICVRDLAKPRTFQVEPHTQLVTDYDAILKDDSINCIIELMGGVTHAKDVVFEALKRGKHVITANKALLAAYLPEIEALLAAAPQARLGYEAAVCGG 138          
BLAST of mRNA_P-wetherbeei_contig5420.1.1 vs. uniprot
Match: D7FNL8_ECTSI (Homoserine dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL8_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 2.190e-52
Identity = 92/146 (63.01%), Postives = 110/146 (75.34%), Query Frame = 1
Query:   13 PLRIGMFGGGVVGGGVYEIVETVKKAFFQSIGANVTIVKICVRDASKPRSFVVGAHTTIVTDYEAILGDSSINCVIELMGGTTHAKDVVFEAIRRGKSVITANKALLAEYLPTIRTLLKENAGVSLAYEAAVCGGAYAVRFTRNSF 450
            PLR+GMFGGG VGGGVYEI E  KKAFFQ +G +  I+K+CVRD+ KPR + +   T +VTDY AIL D SINCV+ELMGG T AKDVVFEAIRR K V+TANKAL+A YL  I+ LLKE+ GV+  YEAAVCGG   +   +N +
Sbjct:   72 PLRVGMFGGGTVGGGVYEICEQDKKAFFQGLGCDSEIIKVCVRDSKKPRDYKMDPKTEVVTDYAAILDDDSINCVVELMGGVTDAKDVVFEAIRRNKHVVTANKALVAAYLGEIQELLKEHPGVTFGYEAAVCGGIPIIATLQNDY 217          
BLAST of mRNA_P-wetherbeei_contig5420.1.1 vs. uniprot
Match: A0A7S4D8P3_HETAK (Homoserine dehydrogenase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8P3_HETAK)

HSP 1 Score: 174 bits (441), Expect = 2.470e-49
Identity = 88/150 (58.67%), Postives = 112/150 (74.67%), Query Frame = 1
Query:    1 ITMPPLRIGMFGGGVVGGGVYEIVETVKKAFFQSIGANVTIVKICVRDASKPRSFVVGAHTTIVTDYEAILGDSSINCVIELMGGTTHAKDVVFEAIRRGKSVITANKALLAEYLPTIRTLLKENAGVSLAYEAAVCGGAYAVRFTRNSF 450
            ++  PL +GMFGGG VGGGVYEI +  KK  F+S+GAN+ I KICV+DA+K R F + ++T IVTD+ AIL D  INCVIE+MGGTT AKDVV+ AI +GK V+TANKALLA++LP I+ LL +N GV   +EAAVCGG   +   +N F
Sbjct:   75 LSPEPLIVGMFGGGTVGGGVYEICQK-KKQLFESLGANIKIKKICVKDATKSRDFKLDSNTEIVTDFNAILDDPEINCVIEVMGGTTAAKDVVYAAIGKGKHVVTANKALLAQHLPEIQELLAQNPGVKFGFEAAVCGGIPIIHTLQNDF 223          
BLAST of mRNA_P-wetherbeei_contig5420.1.1 vs. uniprot
Match: A0A6V1RNX4_HETAK (Homoserine dehydrogenase n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RNX4_HETAK)

HSP 1 Score: 167 bits (422), Expect = 4.990e-45
Identity = 86/148 (58.11%), Postives = 103/148 (69.59%), Query Frame = 1
Query:    7 MPPLRIGMFGGGVVGGGVYEIVETVKKAFFQSIGANVTIVKICVRDASKPRSFVVGAHTTIVTDYEAILGDSSINCVIELMGGTTHAKDVVFEAIRRGKSVITANKALLAEYLPTIRTLLKENAGVSLAYEAAVCGGAYAVRFTRNSF 450
            M  L IGMFGGG VGGGVYEI +  KKA F+S+GAN+ I  ICVR   KPR F V   TTI TD+ AIL D  INCV+E+MGGTT AKDVV+ AI +GK V+TANKALLA+YLP ++  LK    +   YEAAVCGG   +   +N +
Sbjct:   78 METLVIGMFGGGTVGGGVYEICQK-KKALFESLGANIRIKTICVRSLDKPRDFTVADGTTITTDFNAILDDDEINCVVEVMGGTTAAKDVVYAAIEKGKHVVTANKALLAQYLPELQARLKARPLLKFGYEAAVCGGIPIIHTLQNDY 224          
BLAST of mRNA_P-wetherbeei_contig5420.1.1 vs. uniprot
Match: A0A6A4YYC0_9STRA (Homoserine dehydrogenase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YYC0_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.520e-44
Identity = 83/153 (54.25%), Postives = 112/153 (73.20%), Query Frame = 1
Query:    1 ITMPPLRIGMFGGGVVGGGVYEIVETVKKAFFQSIGANVTIVKICVRDASKPR--SFVVGAHTTIVTDYEAILGDSSINCVIELMGGTTHAKDVVFEAIRRGKSVITANKALLAEYLPTIRTLLKENAGVSLAYEAAVCGGAYAVRFTRNSFS 453
            +T+ PLRIG+FG G VGGGV++I+E+ + AF +SIG N TI KICVR+A+KP   + V G  TTI T Y+ IL DSSINC++ELMGG T AKDVVF+AI++ K VITANKAL+A ++  +  LL+ +  V   YEA+VCGG   +   ++S+S
Sbjct:    1 MTLVPLRIGLFGCGTVGGGVFQILES-RAAFLKSIGVNATIEKICVRNATKPELVALVKGHSTTITTKYDDILDDSSINCIVELMGGVTDAKDVVFKAIQKNKHVITANKALVANHMTELNELLQAHPTVRFGYEASVCGGIPIIHTLQSSYS 152          
BLAST of mRNA_P-wetherbeei_contig5420.1.1 vs. uniprot
Match: A0A3R6YZ54_9STRA (Homoserine dehydrogenase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YZ54_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.470e-43
Identity = 82/153 (53.59%), Postives = 110/153 (71.90%), Query Frame = 1
Query:    1 ITMPPLRIGMFGGGVVGGGVYEIVETVKKAFFQSIGANVTIVKICVRDASKPR--SFVVGAHTTIVTDYEAILGDSSINCVIELMGGTTHAKDVVFEAIRRGKSVITANKALLAEYLPTIRTLLKENAGVSLAYEAAVCGGAYAVRFTRNSFS 453
            +T+  LRIG+FG G VGGGV++I+E+ +  F +SIG N TI KICVR+A+KP   + V G  TTI T Y+ IL DSSINC++ELMGG T AKDVVF+AI++ K VITANKAL+A Y+  +  LL+ +  V   YEA+VCGG   +   ++S+S
Sbjct:    1 MTVGALRIGLFGCGTVGGGVFQILES-RATFLKSIGVNATIEKICVRNATKPELVALVQGHSTTITTKYDDILEDSSINCIVELMGGVTDAKDVVFKAIQKNKHVITANKALVASYMTELSDLLQAHPTVRFGYEASVCGGIPIIHTLQSSYS 152          
BLAST of mRNA_P-wetherbeei_contig5420.1.1 vs. uniprot
Match: A0A3R7Z5R8_9STRA (Homoserine dehydrogenase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A3R7Z5R8_9STRA)

HSP 1 Score: 158 bits (400), Expect = 3.350e-42
Identity = 83/153 (54.25%), Postives = 112/153 (73.20%), Query Frame = 1
Query:    1 ITMPPLRIGMFGGGVVGGGVYEIVETVKKAFFQSIGANVTIVKICVRDASKPR--SFVVGAHTTIVTDYEAILGDSSINCVIELMGGTTHAKDVVFEAIRRGKSVITANKALLAEYLPTIRTLLKENAGVSLAYEAAVCGGAYAVRFTRNSFS 453
            +T+ PLRIG+FG G VGGGV++I+E+ + AF +SIG N TI KICVR+A+KP   + V G  TTI T Y+ IL DSSINC++ELMGG T AKDVVF+AI++ K VITANKAL+A ++  +  LL+ +  V   YEA+VCGG   +   ++S+S
Sbjct:   21 MTLVPLRIGLFGCGTVGGGVFQILES-RAAFLKSIGVNATIEKICVRNATKPELVALVKGHSTTITTKYDDILDDSSINCIVELMGGVTDAKDVVFKAIQKNKHVITANKALVANHMTELNELLQAHPTVRFGYEASVCGGIPIIHTLQSSYS 172          
BLAST of mRNA_P-wetherbeei_contig5420.1.1 vs. uniprot
Match: A0A7S2EQA9_9STRA (Homoserine dehydrogenase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EQA9_9STRA)

HSP 1 Score: 155 bits (392), Expect = 4.640e-42
Identity = 79/149 (53.02%), Postives = 104/149 (69.80%), Query Frame = 1
Query:   16 LRIGMFGGGVVGGGVYEIVETVKKAFFQSIGANVTIVKICVRDASKPRSFVVGAHTTIVTDYEAILGDSSINCVIELMGGTTHAKDVVFEAIRRGKSVITANKALLAEYLPTIRTLLKE----NAGVSLAYEAAVCGGAYAVRFTRNSF 450
            LR+G+FGGG VGGG+ EI++   K F +    N+ + KICVRDASKPR F V + T IVT+Y+ IL D  I+ V+E+MGGTT AKD+VF A+R+GK V+TANKAL+A YLP I  +L+E     + V   YEAAVCGG   +R  ++ F
Sbjct:   21 LRLGIFGGGTVGGGIVEIIQQKAKYFNELTTQNIDVRKICVRDASKPRDFTVPSTTEIVTNYDDILNDDEIDVVVEVMGGTTDAKDIVFSALRKGKDVVTANKALIAAYLPEIEAILEEVNSDGSRVEFRYEAAVCGGIPVIRSLQSDF 169          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5420.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAD6_9STRA3.060e-5665.77Homoserine dehydrogenase n=1 Tax=Tribonema minus T... [more]
D8LHG9_ECTSI1.470e-5462.33Homoserine dehydrogenase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YR06_9STRA1.590e-5269.40Homoserine dehydrogenase n=1 Tax=Tribonema minus T... [more]
D7FNL8_ECTSI2.190e-5263.01Homoserine dehydrogenase n=1 Tax=Ectocarpus silicu... [more]
A0A7S4D8P3_HETAK2.470e-4958.67Homoserine dehydrogenase (Fragment) n=1 Tax=Hetero... [more]
A0A6V1RNX4_HETAK4.990e-4558.11Homoserine dehydrogenase n=3 Tax=Heterosigma akash... [more]
A0A6A4YYC0_9STRA2.520e-4454.25Homoserine dehydrogenase n=1 Tax=Aphanomyces astac... [more]
A0A3R6YZ54_9STRA1.470e-4353.59Homoserine dehydrogenase n=1 Tax=Aphanomyces invad... [more]
A0A3R7Z5R8_9STRA3.350e-4254.25Homoserine dehydrogenase n=5 Tax=Aphanomyces TaxID... [more]
A0A7S2EQA9_9STRA4.640e-4253.02Homoserine dehydrogenase (Fragment) n=1 Tax=Ditylu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5420contigP-wetherbeei_contig5420:2870..3848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNL8
PFAMsHomoserine_dh,NAD_binding_3
Model size758
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.3e-54
EggNOG OGsCOG0460@1|root,2QT5B@2759|Eukaryota
Ec32 ortholog descriptionHomoserine dehydrogenase
Ec32 orthologEc-01_005000.1
DescriptionHomoserine dehydrogenase
Cds size480
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186810.3279407-UTR-P-wetherbeei_contig5420:2869..28751683186810.3279407-UTR-P-wetherbeei_contig5420:2869..2875Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5420 2870..2875 +
1683186810.3768733-UTR-P-wetherbeei_contig5420:3576..38481683186810.3768733-UTR-P-wetherbeei_contig5420:3576..3848Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5420 3577..3848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186810.3449328-CDS-P-wetherbeei_contig5420:2875..29241683186810.3449328-CDS-P-wetherbeei_contig5420:2875..2924Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5420 2876..2924 +
1683186810.3575737-CDS-P-wetherbeei_contig5420:3034..31081683186810.3575737-CDS-P-wetherbeei_contig5420:3034..3108Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5420 3035..3108 +
1683186810.3668747-CDS-P-wetherbeei_contig5420:3219..35761683186810.3668747-CDS-P-wetherbeei_contig5420:3219..3576Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5420 3220..3576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5420.1.1prot_P-wetherbeei_contig5420.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5420 2876..3576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5420.1.1

>prot_P-wetherbeei_contig5420.1.1 ID=prot_P-wetherbeei_contig5420.1.1|Name=mRNA_P-wetherbeei_contig5420.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MPPLRIGMFGGGVVGGGVYEIVETVKKAFFQSIGANVTIVKICVRDASKP
RSFVVGAHTTIVTDYEAILGDSSINCVIELMGGTTHAKDVVFEAIRRGKS
VITANKALLAEYLPTIRTLLKENAGVSLAYEAAVCGGAYAVRFTRNSFSS
RMRPGGKPS*
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mRNA from alignment at P-wetherbeei_contig5420:2870..3848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5420.1.1 ID=mRNA_P-wetherbeei_contig5420.1.1|Name=mRNA_P-wetherbeei_contig5420.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=979bp|location=Sequence derived from alignment at P-wetherbeei_contig5420:2870..3848+ (Phaeothamnion wetherbeei SAG_119_79)
ATCACCATGCCACCTCTCCGCATCGGCATGTTTGGCGGCGGCGTCGTGGG CGGCGGTAGGTCGGATTGCTTGTTAAGCGATTAGGTCCCCATCAACCACA AAGTGCGATTTGCGCATGAAAGAACAACCAATCTCACGCCGCTGCGCTAC TGTGACACTTCGCAGGCGTTTACGAGATAGTCGAAACCGTCAAGAAGGCC TTCTTTCAGTCCATTGGTGCTAATGTGACCATTGTGAAGGTAGGCCCGAG AGGAGTGTGATGTTATCGCCTTGGCAGTCCTTTGTCAACGAGATGCTTTA TCCGCGACGCTCGAGGACACGTCGTCTTTGCCTGTAACATGGAACGACAG ATTTGCGTGCGGGATGCCTCCAAGCCCCGCTCCTTCGTCGTGGGCGCCCA CACTACCATCGTCACGGACTACGAGGCTATCCTCGGAGACAGCAGCATCA ACTGCGTCATCGAGTTGATGGGTGGCACGACGCATGCCAAGGACGTCGTG TTTGAGGCAATTCGGCGCGGCAAGAGCGTCATCACGGCCAACAAGGCCCT CTTGGCCGAGTACCTTCCGACGATCCGCACGCTACTGAAGGAGAATGCCG GCGTATCTTTGGCCTATGAAGCGGCCGTCTGCGGAGGTGCGTATGCAGTT CGGTTTACTCGAAACTCATTCAGTTCCCGAATGCGACCAGGAGGAAAGCC CTCGTAGCTTTCCAGACAGAGCATGCGATTCTGTTTCAGAGGCATCTACA GTTTACGAATCCAAGGCTCTCCGTTTACTTTACCTGCCATTCAGGGTGGA CTAGCTGAAGAACGGAGAGGTTTCTTCCTCTCTTTCTGCCTTATTGTGTC TGGCTTTGCGCCATGTTCAGCAAGATCGACATTTCGTGTCGTAAACACTG CTAAGCTGTCACTGCCAGGAGTGCCTCACCCCATGTGCACATCGTTGTCC CTTTCGCCCTCCGCTTTTCCGTATTCCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5420:2870..3848+

>mRNA_P-wetherbeei_contig5420.1.1 ID=mRNA_P-wetherbeei_contig5420.1.1|Name=mRNA_P-wetherbeei_contig5420.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig5420:2870..3848+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCACCTCTCCGCATCGGCATGTTTGGCGGCGGCGTCGTGGGCGGCGG
CGTTTACGAGATAGTCGAAACCGTCAAGAAGGCCTTCTTTCAGTCCATTG
GTGCTAATGTGACCATTGTGAAGATTTGCGTGCGGGATGCCTCCAAGCCC
CGCTCCTTCGTCGTGGGCGCCCACACTACCATCGTCACGGACTACGAGGC
TATCCTCGGAGACAGCAGCATCAACTGCGTCATCGAGTTGATGGGTGGCA
CGACGCATGCCAAGGACGTCGTGTTTGAGGCAATTCGGCGCGGCAAGAGC
GTCATCACGGCCAACAAGGCCCTCTTGGCCGAGTACCTTCCGACGATCCG
CACGCTACTGAAGGAGAATGCCGGCGTATCTTTGGCCTATGAAGCGGCCG
TCTGCGGAGGTGCGTATGCAGTTCGGTTTACTCGAAACTCATTCAGTTCC
CGAATGCGACCAGGAGGAAAGCCCTCGTAG
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