mRNA_P-wetherbeei_contig542.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig542.4.1
Unique NamemRNA_P-wetherbeei_contig542.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig542.4.1 vs. uniprot
Match: D8LN18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN18_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 6.390e-8
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 GDDEEGLRALRQQLAAVQRIRIEHERKDAIIAALR 105
            G DEEGL  LRQQL+AVQRIRIEHERKDA IAALR
Sbjct:  112 GGDEEGLGLLRQQLSAVQRIRIEHERKDATIAALR 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig542.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN18_ECTSI6.390e-885.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig542contigP-wetherbeei_contig542:8609..8713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size105
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size105
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186810.2939982-CDS-P-wetherbeei_contig542:8608..87131683186810.2939982-CDS-P-wetherbeei_contig542:8608..8713Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig542 8609..8713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig542.4.1prot_P-wetherbeei_contig542.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig542 8609..8713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig542.4.1

>prot_P-wetherbeei_contig542.4.1 ID=prot_P-wetherbeei_contig542.4.1|Name=mRNA_P-wetherbeei_contig542.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=35bp
GDDEEGLRALRQQLAAVQRIRIEHERKDAIIAALR
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mRNA from alignment at P-wetherbeei_contig542:8609..8713+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig542.4.1 ID=mRNA_P-wetherbeei_contig542.4.1|Name=mRNA_P-wetherbeei_contig542.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=105bp|location=Sequence derived from alignment at P-wetherbeei_contig542:8609..8713+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGACGACGAGGAAGGGCTGCGGGCCTTGCGGCAGCAGCTTGCTGCAGT
GCAGCGCATCCGCATCGAGCACGAGCGCAAGGACGCCATCATTGCTGCGC
TGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig542:8609..8713+

>mRNA_P-wetherbeei_contig542.4.1 ID=mRNA_P-wetherbeei_contig542.4.1|Name=mRNA_P-wetherbeei_contig542.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=105bp|location=Sequence derived from alignment at P-wetherbeei_contig542:8609..8713+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGACGACGAGGAAGGGCTGCGGGCCTTGCGGCAGCAGCTTGCTGCAGT
GCAGCGCATCCGCATCGAGCACGAGCGCAAGGACGCCATCATTGCTGCGC
TGCGG
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