mRNA_P-wetherbeei_contig5417.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5417.2.1
Unique NamemRNA_P-wetherbeei_contig5417.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5417.2.1 vs. uniprot
Match: A0A7R9ZH63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH63_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.220e-6
Identity = 33/76 (43.42%), Postives = 43/76 (56.58%), Query Frame = 2 
Query:  227 ENATVPSVATAGDEEGKAEAPARECGIRQKLVDFYSVHNPSKLATVDSILEQYQGQEDLLLRLLHEKYATRQPLPT 454
            E+A  PS       EG A+ P RE     +L+ FY  HNPSKL +VD  L  ++G+EDLL + L +KY    P PT
Sbjct:   60 ESAAKPSAQEEAKAEGGAKNPHRE-----RLIQFYEKHNPSKLGSVDKTLANFKGREDLLFKKLEDKYC---PAPT 127
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BLAST of mRNA_P-wetherbeei_contig5417.2.1 vs. uniprot
Match: A0A8K1CIT2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIT2_PYTOL)

HSP 1 Score: 57.0 bits (136), Expect = 1.510e-5
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 2 
Query:  308 RQKLVDFYSVHNPSKLATVDSILEQYQGQEDLLLRLLHEKYA 433
            RQ+LV FYS HNP KLA VD IL++Y+GQE+LL   L  KY+
Sbjct:  127 RQRLVAFYSKHNPPKLADVDKILKKYKGQEELLFTRLQRKYS 168
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BLAST of mRNA_P-wetherbeei_contig5417.2.1 vs. uniprot
Match: A0A3R6Z4V9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6Z4V9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.570e-5
Identity = 22/56 (39.29%), Postives = 38/56 (67.86%), Query Frame = 2 
Query:  272 GKAEAPARECGIRQKLVDFYSVHNPSKLATVDSILEQYQGQEDLLLRLLHEKYATR 439
            G A+ P+R      +LV FY+ HNPS + +++S+L +Y+G+E+ L++ +H KY  R
Sbjct:   24 GDAKGPSRVMSYHDRLVHFYTEHNPSMIPSIESLLRRYKGEEEALIQSVHIKYDVR 79
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BLAST of mRNA_P-wetherbeei_contig5417.2.1 vs. uniprot
Match: A0A7S4N3H3_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N3H3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.940e-5
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:  266 EEGKAEAP-----ARECGIRQKLVDFYSVHNPSKLATVDSILEQYQGQEDLLLRLLHEKYATRQPLPTG 457
            ++G+A +P     +++   R++LV+FY  HNPSK+ +VD  L  ++G+ED L + L +KY    PL  G
Sbjct:   11 DKGEASSPKKAEQSQQKSHRERLVEFYKKHNPSKMTSVDKTLVTFKGREDQLFKKLEQKYCPATPLAPG 79
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BLAST of mRNA_P-wetherbeei_contig5417.2.1 vs. uniprot
Match: A0A485KXP7_9STRA (Aste57867_13269 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXP7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.520e-5
Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 2 
Query:  305 IRQKLVDFYSVHNPSKLATVDSILEQYQGQEDLLLRLLHEKYATR 439
             R +LV FYSVHNP+KLA++D++  +Y G E+ L++ +H KY  R
Sbjct:   10 FRHRLVKFYSVHNPAKLASIDALQSKYDGDEEALIQKIHLKYGVR 54
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BLAST of mRNA_P-wetherbeei_contig5417.2.1 vs. uniprot
Match: A0A7S0A709_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A709_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 7.080e-5
Identity = 31/84 (36.90%), Postives = 44/84 (52.38%), Query Frame = 2 
Query:  239 VPSVATAGDEEGKAEAPARECGIRQKLVDFYSVHNPSKLATVDSILEQYQGQEDLLLRLLHEKYATRQPLPTGDKVRAHGKGSG 490
            +P +A + D     EA   +   R +LV+ Y+ HNPSKL  +D +LE+Y+GQE  L   + +KY   QPL   D   A     G
Sbjct:   47 IPCMAASPDV-NNFEAGRDKAWYRDRLVEIYTQHNPSKLGEIDKLLEKYKGQETTLYEKVCKKYGV-QPLQHRDCAAASAAAGG 128
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BLAST of mRNA_P-wetherbeei_contig5417.2.1 vs. uniprot
Match: A0A024U8K3_9STRA (Peroxin/Ferlin domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8K3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.950e-5
Identity = 22/56 (39.29%), Postives = 38/56 (67.86%), Query Frame = 2 
Query:  272 GKAEAPARECGIRQKLVDFYSVHNPSKLATVDSILEQYQGQEDLLLRLLHEKYATR 439
            G A+ P+R      +LV FY+ HNPS + +++S+L +Y+G+E+ L++ +H KY  R
Sbjct:    7 GDAKGPSRVMSYHDRLVHFYTEHNPSMIPSIESLLRRYKGEEEALIQSVHIKYDVR 62
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5417.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7R9ZH63_9STRA3.220e-643.42Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A8K1CIT2_PYTOL1.510e-561.90Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R6Z4V9_9STRA2.570e-539.29Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S4N3H3_9STRA3.940e-537.68Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A485KXP7_9STRA5.520e-548.89Aste57867_13269 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S0A709_9DINO7.080e-536.90Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A024U8K3_9STRA7.950e-539.29Peroxin/Ferlin domain-containing protein n=1 Tax=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5417contigP-wetherbeei_contig5417:440..1487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog42099.EPrPV00000019825
PFAMsPro_isomerase
Model size1049
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue9e-08
EggNOG OGsCOG0652@1|root,KOG0865@2759|Eukaryota,1MFQH@121069|Pythiales
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001010.1
DescriptionPeptidyl-prolyl cis-trans isomerase. Source PGD
Cds size1026
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186809.6899843-UTR-P-wetherbeei_contig5417:439..4611683186809.6899843-UTR-P-wetherbeei_contig5417:439..461Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5417 440..461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186809.704393-CDS-P-wetherbeei_contig5417:461..14871683186809.704393-CDS-P-wetherbeei_contig5417:461..1487Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5417 462..1487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5417.2.1prot_P-wetherbeei_contig5417.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5417 462..1487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5417.2.1

>prot_P-wetherbeei_contig5417.2.1 ID=prot_P-wetherbeei_contig5417.2.1|Name=mRNA_P-wetherbeei_contig5417.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=342bp
MEAETLKAEDAEVAENTEEIDRAPVPIPVSSLPVLDSEDEASSPDDKRGA
APPQHTSLDGDREDQSPPENATVPSVATAGDEEGKAEAPARECGIRQKLV
DFYSVHNPSKLATVDSILEQYQGQEDLLLRLLHEKYATRQPLPTGDKVRA
HGKGSGGGGAGGGDAAESTGNGGSAITNASTSPLLDDGSSTSSTSAGSVA
AASAYTAKASQSLYFLAHQLKTNVNSLLVPVPQKAPLPTAALTGVLAATA
VASPRVDGDVSVPSSGREPAAPGSLPSGAGPRHIASMSDTEISNTVSLAD
GLLPAGAPVSDPAAAAAAAIAASPLMAPGGAGLRAEDAQLPH
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mRNA from alignment at P-wetherbeei_contig5417:440..1487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5417.2.1 ID=mRNA_P-wetherbeei_contig5417.2.1|Name=mRNA_P-wetherbeei_contig5417.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1048bp|location=Sequence derived from alignment at P-wetherbeei_contig5417:440..1487+ (Phaeothamnion wetherbeei SAG_119_79)
GGTTCGTAAGAAAAAATCCGCGATGGAGGCCGAAACATTGAAAGCAGAGG
ACGCAGAAGTCGCTGAAAACACAGAAGAAATTGACAGAGCGCCAGTGCCC
ATCCCAGTATCATCTCTACCAGTCTTGGACAGCGAGGACGAGGCATCTTC
GCCGGATGACAAGAGAGGAGCAGCGCCGCCACAGCACACGTCTTTAGACG
GTGATCGGGAAGATCAATCACCACCAGAAAATGCCACGGTTCCGTCAGTT
GCAACAGCAGGCGACGAGGAGGGCAAAGCCGAGGCGCCCGCCAGAGAGTG
TGGCATAAGGCAAAAGCTCGTTGATTTTTACAGCGTGCACAATCCCTCGA
AGCTGGCGACGGTCGACTCAATTCTGGAGCAATATCAGGGTCAGGAGGAC
TTGCTCCTCCGGCTGCTTCACGAAAAATACGCAACGAGGCAACCTCTTCC
TACTGGCGACAAGGTCCGAGCCCATGGGAAAGGCAGCGGCGGCGGGGGAG
CTGGCGGAGGCGACGCCGCTGAAAGTACTGGCAACGGCGGCAGTGCAATT
ACCAACGCCAGTACGTCGCCTTTGCTGGACGACGGGAGCAGCACCAGCTC
CACAAGCGCTGGCAGCGTCGCCGCCGCGAGCGCCTATACTGCAAAAGCAT
CGCAGTCCCTCTATTTTCTGGCGCATCAACTGAAAACGAACGTTAATTCG
CTGCTGGTCCCCGTACCGCAAAAAGCCCCGCTGCCAACGGCGGCATTGAC
AGGAGTTTTGGCAGCGACTGCGGTGGCGTCGCCACGAGTGGATGGCGACG
TGTCGGTTCCATCGTCGGGGCGGGAACCGGCTGCTCCCGGGTCACTGCCT
TCCGGGGCAGGGCCGAGGCATATTGCGAGCATGTCTGATACCGAGATATC
CAACACTGTTTCATTAGCAGACGGCCTGCTTCCAGCAGGGGCGCCGGTCT
CCGACCCCGCCGCCGCAGCAGCAGCTGCAATAGCAGCAAGCCCTTTGATG
GCGCCCGGCGGCGCCGGACTGCGTGCGGAGGACGCGCAATTACCTCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5417:440..1487+

>mRNA_P-wetherbeei_contig5417.2.1 ID=mRNA_P-wetherbeei_contig5417.2.1|Name=mRNA_P-wetherbeei_contig5417.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1026bp|location=Sequence derived from alignment at P-wetherbeei_contig5417:440..1487+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCCGAAACATTGAAAGCAGAGGACGCAGAAGTCGCTGAAAACAC
AGAAGAAATTGACAGAGCGCCAGTGCCCATCCCAGTATCATCTCTACCAG
TCTTGGACAGCGAGGACGAGGCATCTTCGCCGGATGACAAGAGAGGAGCA
GCGCCGCCACAGCACACGTCTTTAGACGGTGATCGGGAAGATCAATCACC
ACCAGAAAATGCCACGGTTCCGTCAGTTGCAACAGCAGGCGACGAGGAGG
GCAAAGCCGAGGCGCCCGCCAGAGAGTGTGGCATAAGGCAAAAGCTCGTT
GATTTTTACAGCGTGCACAATCCCTCGAAGCTGGCGACGGTCGACTCAAT
TCTGGAGCAATATCAGGGTCAGGAGGACTTGCTCCTCCGGCTGCTTCACG
AAAAATACGCAACGAGGCAACCTCTTCCTACTGGCGACAAGGTCCGAGCC
CATGGGAAAGGCAGCGGCGGCGGGGGAGCTGGCGGAGGCGACGCCGCTGA
AAGTACTGGCAACGGCGGCAGTGCAATTACCAACGCCAGTACGTCGCCTT
TGCTGGACGACGGGAGCAGCACCAGCTCCACAAGCGCTGGCAGCGTCGCC
GCCGCGAGCGCCTATACTGCAAAAGCATCGCAGTCCCTCTATTTTCTGGC
GCATCAACTGAAAACGAACGTTAATTCGCTGCTGGTCCCCGTACCGCAAA
AAGCCCCGCTGCCAACGGCGGCATTGACAGGAGTTTTGGCAGCGACTGCG
GTGGCGTCGCCACGAGTGGATGGCGACGTGTCGGTTCCATCGTCGGGGCG
GGAACCGGCTGCTCCCGGGTCACTGCCTTCCGGGGCAGGGCCGAGGCATA
TTGCGAGCATGTCTGATACCGAGATATCCAACACTGTTTCATTAGCAGAC
GGCCTGCTTCCAGCAGGGGCGCCGGTCTCCGACCCCGCCGCCGCAGCAGC
AGCTGCAATAGCAGCAAGCCCTTTGATGGCGCCCGGCGGCGCCGGACTGC
GTGCGGAGGACGCGCAATTACCTCAT
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