mRNA_P-wetherbeei_contig54164.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54164.1.1
Unique NamemRNA_P-wetherbeei_contig54164.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54164.1.1 vs. uniprot
Match: UPI001E64B2A6 (DUF6069 family protein n=1 Tax=Aeromicrobium sp. Leaf350 TaxID=2876565 RepID=UPI001E64B2A6)

HSP 1 Score: 54.7 bits (130), Expect = 1.730e-7
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   76 GLIGGIVAAVANTALVAAAHGADVSLDVADEAIPLAGFAMLTIVGALLGIGLAAIL 243
            GL+ G+VAA+  TA+ A A  ADVSL+V   AIPLA FA+ TIVGA+LGI LA +L
Sbjct:   15 GLLAGVVAAIGTTAVAATASAADVSLEVDGAAIPLAAFALWTIVGAVLGIVLARVL 70
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BLAST of mRNA_P-wetherbeei_contig54164.1.1 vs. uniprot
Match: A0A3L8PN73_9ACTN (Uncharacterized protein n=1 Tax=Aeromicrobium phragmitis TaxID=2478914 RepID=A0A3L8PN73_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 8.580e-7
Identity = 35/65 (53.85%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   58 GRYVRAGLIGGIVAAVANTALVAAAHGADVSLDVADEAIPLAGFAMLTIVGALLGIGLAAILRRR 252
            G   + G I G+ AA+A T L   A  ADVSL+V    IP   FAM TIVGA+LGIGLA +LR R
Sbjct:    5 GSLAKTGAIAGVAAALATTGLAVIAKAADVSLEVDAVPIPPGAFAMWTIVGAVLGIGLALLLRTR 69
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BLAST of mRNA_P-wetherbeei_contig54164.1.1 vs. uniprot
Match: A0A0Q8V228_9ACTN (Cell envelope biogenesis protein OmpA n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A0Q8V228_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 1.660e-6
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    1 MSTTTFPATQAPAVTGTSTGRYVRAGLIGGIVAAVANTALVAAAHGADVSL-DVADEAIPLAGFAMLTIVGALLGIGLAAILRRR 252
            MSTT  P ++  A   T      R GL   +VA+VA T+L A A  A VS  D    +IPLAGFA LT++ +LLG+GLAA++ RR
Sbjct:    1 MSTTYSPTSRTSATRATRRPTVWRHGLAASVVASVATTSLAAIASAAGVSFADSTGASIPLAGFAQLTLMFSLLGVGLAAVMARR 85
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BLAST of mRNA_P-wetherbeei_contig54164.1.1 vs. uniprot
Match: UPI00167D7C47 (DUF6069 family protein n=3 Tax=Streptomyces TaxID=1883 RepID=UPI00167D7C47)

HSP 1 Score: 48.9 bits (115), Expect = 3.510e-5
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:   52 STGRYVRAGLIGGIVAAVANTALVAAAHGADVSLDVADEAIPLAGFAMLTIVGALLGIGLAAILRRR 252
            ST   VR G + G  AAV  TA+ A A  ADV L+V   AIP+A FA+ T+VGA LG+ +A +LR R
Sbjct:   19 STLLLVRRGGLAGAFAAVCTTAMAAIARAADVGLEVDAAAIPIAAFALWTLVGAALGVLMARLLRAR 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54164.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI001E64B2A61.730e-760.71DUF6069 family protein n=1 Tax=Aeromicrobium sp. L... [more]
A0A3L8PN73_9ACTN8.580e-753.85Uncharacterized protein n=1 Tax=Aeromicrobium phra... [more]
A0A0Q8V228_9ACTN1.660e-647.06Cell envelope biogenesis protein OmpA n=2 Tax=uncl... [more]
UPI00167D7C473.510e-550.75DUF6069 family protein n=3 Tax=Streptomyces TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54164contigP-wetherbeei_contig54164:2..253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1048339.KB913029_gene4722
Model size252
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.95e-08
EggNOG OGs2E10F@1|root,32WGJ@2|Bacteria,2IRR8@201174|Actinobacteria,4ET73@85013|Frankiales
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186809.6197164-CDS-P-wetherbeei_contig54164:1..2531683186809.6197164-CDS-P-wetherbeei_contig54164:1..253Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54164 2..253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54164.1.1prot_P-wetherbeei_contig54164.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54164 2..253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54164.1.1

>prot_P-wetherbeei_contig54164.1.1 ID=prot_P-wetherbeei_contig54164.1.1|Name=mRNA_P-wetherbeei_contig54164.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
MSTTTFPATQAPAVTGTSTGRYVRAGLIGGIVAAVANTALVAAAHGADVS
LDVADEAIPLAGFAMLTIVGALLGIGLAAILRRR
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mRNA from alignment at P-wetherbeei_contig54164:2..253-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54164.1.1 ID=mRNA_P-wetherbeei_contig54164.1.1|Name=mRNA_P-wetherbeei_contig54164.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig54164:2..253- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACCACCACGTTCCCCGCAACGCAGGCTCCCGCCGTCACCGGCAC
GTCGACCGGTCGCTACGTCCGCGCGGGTCTCATCGGCGGCATCGTCGCCG
CAGTCGCGAACACCGCCCTCGTGGCTGCGGCCCATGGCGCCGACGTCAGC
CTGGACGTCGCCGACGAGGCGATCCCGTTGGCCGGGTTCGCCATGCTGAC
CATCGTCGGCGCCCTGCTCGGCATCGGGCTCGCGGCCATCCTGCGCCGTC
GT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54164:2..253-

>mRNA_P-wetherbeei_contig54164.1.1 ID=mRNA_P-wetherbeei_contig54164.1.1|Name=mRNA_P-wetherbeei_contig54164.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig54164:2..253- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACCACCACGTTCCCCGCAACGCAGGCTCCCGCCGTCACCGGCAC
GTCGACCGGTCGCTACGTCCGCGCGGGTCTCATCGGCGGCATCGTCGCCG
CAGTCGCGAACACCGCCCTCGTGGCTGCGGCCCATGGCGCCGACGTCAGC
CTGGACGTCGCCGACGAGGCGATCCCGTTGGCCGGGTTCGCCATGCTGAC
CATCGTCGGCGCCCTGCTCGGCATCGGGCTCGCGGCCATCCTGCGCCGTC
GT
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