mRNA_P-wetherbeei_contig54155.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54155.1.1
Unique NamemRNA_P-wetherbeei_contig54155.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54155.1.1 vs. uniprot
Match: A0A127ER86_9HYPH (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ER86_9HYPH)

HSP 1 Score: 213 bits (543), Expect = 2.270e-68
Identity = 98/143 (68.53%), Postives = 115/143 (80.42%), Query Frame = 1
Query:    4 TTDHDLVVLVDDNDVAIGTAEKLGAHQRGLKHRAISALVRNSAGEFLLQRRALEKYHSGGLWTNACCSHPLPGESPADAAQRRLMQEMGIACTLSPMFIVHYRADVSGGLIENELVHVFGGTHDGPVAPDPAEVSETRWMTLA 432
            T+D D ++LVD +DV IGTA KL AHQRGL+HRAIS LVRN++GEFLLQRR   KYHSGGLWTNACCSHPLP E+ +DAA+RRL QEMG  C L P+F+ HY   V GGLIENE+VHV+GG HDG + PDPAEVSE +W+  A
Sbjct:    8 TSDTDPIILVDADDVQIGTAGKLDAHQRGLRHRAISVLVRNASGEFLLQRRNPAKYHSGGLWTNACCSHPLPDEATSDAARRRLSQEMGFTCALEPLFVYHYNDPVPGGLIENEIVHVYGGRHDGAIRPDPAEVSEFKWVRYA 150          
BLAST of mRNA_P-wetherbeei_contig54155.1.1 vs. uniprot
Match: J6UJB3_9RHOB (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Rhodovulum sp. PH10 TaxID=1187851 RepID=J6UJB3_9RHOB)

HSP 1 Score: 191 bits (485), Expect = 1.600e-59
Identity = 90/139 (64.75%), Postives = 103/139 (74.10%), Query Frame = 1
Query:   22 VVLVDDNDVAIGTAEKLGAHQRGLKHRAISALVRNSAGEFLLQRRALEKYHSGGLWTNACCSHPLPGESPADAAQRRLMQEMGIACTLSPMFIVHYRADVSGGLIENELVHVFGGTHDGPVAPDPAEVSETRWMTLAAL 438
            ++LVD +D  IG A K   H+RGL HRAIS LVRNSAGE L+QRR  +KYHSGGLW N CCSHP PGES  DAA RRL +EMG +CTLSP+FI  YRA +S G IE+ELVH FGGT DG V+PDP EVSE  W+    L
Sbjct:   15 IILVDASDKPIGVAGKTEVHRRGLPHRAISVLVRNSAGELLIQRRNPQKYHSGGLWANTCCSHPRPGESTLDAALRRLPEEMGFSCTLSPLFITRYRAKLSNGFIEDELVHAFGGTFDGEVSPDPEEVSEHAWVAFDTL 153          
BLAST of mRNA_P-wetherbeei_contig54155.1.1 vs. uniprot
Match: A0A1G6ECW8_9HYPH (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Bauldia litoralis TaxID=665467 RepID=A0A1G6ECW8_9HYPH)

HSP 1 Score: 186 bits (472), Expect = 1.210e-57
Identity = 87/146 (59.59%), Postives = 109/146 (74.66%), Query Frame = 1
Query:    1 MTTDHDLVVLVDDNDVAIGTAEKLGAHQRGLKHRAISALVRNSAGEFLLQRRALEKYHSGGLWTNACCSHPLPGESPADAAQRRLMQEMGIACTLSPMFIVHYRADVSGGLIENELVHVFGGTHDGPVAPDPAEVSETRWMTLAAL 438
            ++TD+D V+LV+ +D  +GT +KL AHQ G+ HRA+S +V  S G  LLQ+RA  KYHSGGLWTN CCSHP PGE+   AAQRRL +EMG AC L+P+F VHYRA+VS  LIENELVHVFGG  +G   P+PAEV + RW +  A+
Sbjct:    2 VSTDNDRVILVERDDREVGTLDKLAAHQSGVLHRALSVIVARSDGSLLLQKRAAAKYHSGGLWTNTCCSHPRPGEAVDVAAQRRLEEEMGFACPLTPLFTVHYRANVSNDLIENELVHVFGGRFEGEPNPNPAEVEDWRWASPEAI 147          
BLAST of mRNA_P-wetherbeei_contig54155.1.1 vs. uniprot
Match: A0A327L7C7_9HYPH (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327L7C7_9HYPH)

HSP 1 Score: 181 bits (460), Expect = 1.010e-55
Identity = 86/139 (61.87%), Postives = 99/139 (71.22%), Query Frame = 1
Query:   22 VVLVDDNDVAIGTAEKLGAHQRGLKHRAISALVRNSAGEFLLQRRALEKYHSGGLWTNACCSHPLPGESPADAAQRRLMQEMGIACTLSPMFIVHYRADVSGGLIENELVHVFGGTHDGPVAPDPAEVSETRWMTLAAL 438
            ++LVD +D   G A K   H+RGL HRAIS LVRN+ GE L+QRR   KYHSGGLW N CCSHP PGES  DAA RRL +EMG  CTL+P+F  HYRA +S G IE+ELVH FGGT +GPVAP P EVSE  W+    L
Sbjct:   15 IILVDADDRPTGVAGKTEVHRRGLPHRAISVLVRNARGEMLIQRRNPAKYHSGGLWANTCCSHPRPGESTLDAALRRLPEEMGFVCTLAPLFKTHYRATLSNGFIEDELVHAFGGTWEGPVAPAPDEVSEYAWVPSETL 153          
BLAST of mRNA_P-wetherbeei_contig54155.1.1 vs. uniprot
Match: A0A0H5BF16_BLAVI (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Blastochloris viridis TaxID=1079 RepID=A0A0H5BF16_BLAVI)

HSP 1 Score: 181 bits (458), Expect = 1.900e-55
Identity = 87/139 (62.59%), Postives = 105/139 (75.54%), Query Frame = 1
Query:   22 VVLVDDNDVAIGTAEKLGAHQRGLKHRAISALVRNSAGEFLLQRRALEKYHSGGLWTNACCSHPLPGESPADAAQRRLMQEMGIACTLSPMFIVHYRADVSGGLIENELVHVFGGTHDGPVAPDPAEVSETRWMTLAAL 438
            VVL+D  D+ IGTAEKL AH++GLKH AIS +VR+ AG +LLQRRA  KYHSGGLWTN CCSHP PGE+   AA RRL++EMGIAC L   F+  YRA V   LIE+E+VHVF GT+DG ++PDP EV   RW+ +A L
Sbjct:   19 VVLLDGADLPIGTAEKLDAHRQGLKHLAISVIVRDGAGRWLLQRRAAGKYHSGGLWTNTCCSHPRPGEAVPAAAARRLVEEMGIACPLELAFVTTYRAAVEPDLIEHEVVHVFLGTYDGAISPDPDEVDAWRWVAVAEL 157          
BLAST of mRNA_P-wetherbeei_contig54155.1.1 vs. uniprot
Match: A0A2H6AZ12_9BACT (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=bacterium HR40 TaxID=2035435 RepID=A0A2H6AZ12_9BACT)

HSP 1 Score: 180 bits (456), Expect = 5.240e-55
Identity = 81/141 (57.45%), Postives = 103/141 (73.05%), Query Frame = 1
Query:    1 MTTDHDLVVLVDDNDVAIGTAEKLGAHQRGLKHRAISALVRNSAGEFLLQRRALEKYHSGGLWTNACCSHPLPGESPADAAQRRLMQEMGIACTLSPMFIVHYRADVSGGLIENELVHVFGGTHDGPVAPDPAEVSETRWM 423
            M    + V+LVDD+D A+GTA KL AH+ GL+HRA+S ++R+  G  LLQ+RA+ KYHSGGLWTN CCSHP P E    AAQRRL++EMG +C L P+  V YRADV GG+IE+E+VHVF G +DGP+ PDP E     W+
Sbjct:    1 MIDSEEFVLLVDDDDQAVGTAGKLEAHRHGLRHRALSVVIRDPRGRLLLQKRAIGKYHSGGLWTNTCCSHPRPQEPVERAAQRRLLEEMGFSCELLPLLRVPYRADVGGGMIEDEIVHVFAGVYDGPLRPDPREAEGYAWV 141          
BLAST of mRNA_P-wetherbeei_contig54155.1.1 vs. uniprot
Match: A0A327KH60_9HYPH (Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Rhodoplanes elegans TaxID=29408 RepID=A0A327KH60_9HYPH)

HSP 1 Score: 179 bits (454), Expect = 6.800e-55
Identity = 86/139 (61.87%), Postives = 97/139 (69.78%), Query Frame = 1
Query:   22 VVLVDDNDVAIGTAEKLGAHQRGLKHRAISALVRNSAGEFLLQRRALEKYHSGGLWTNACCSHPLPGESPADAAQRRLMQEMGIACTLSPMFIVHYRADVSGGLIENELVHVFGGTHDGPVAPDPAEVSETRWMTLAAL 438
            ++LVD +D   G A K   H+RGL HRAIS LVRN  GE L+QRR   KYHSGGLW N CCSHP PGES  DAA RRL +EMG AC L+P+F  HYRA +S G IE+ELVH FGGT DG VAP P EVSE  W+    L
Sbjct:    9 IILVDADDRPTGVAGKTEVHRRGLPHRAISVLVRNPRGEILIQRRNPAKYHSGGLWANTCCSHPRPGESTLDAALRRLPEEMGFACALAPIFKTHYRATLSNGFIEDELVHAFGGTFDGVVAPAPDEVSEYAWVPFETL 147          
BLAST of mRNA_P-wetherbeei_contig54155.1.1 vs. uniprot
Match: A0A327K3U9_9HYPH (Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A327K3U9_9HYPH)

HSP 1 Score: 178 bits (452), Expect = 1.650e-54
Identity = 84/139 (60.43%), Postives = 97/139 (69.78%), Query Frame = 1
Query:   22 VVLVDDNDVAIGTAEKLGAHQRGLKHRAISALVRNSAGEFLLQRRALEKYHSGGLWTNACCSHPLPGESPADAAQRRLMQEMGIACTLSPMFIVHYRADVSGGLIENELVHVFGGTHDGPVAPDPAEVSETRWMTLAAL 438
            ++LVD +D  +GTA K   H+RGL HRAIS LVRN  G+ L+QRR   KYHSGGLW N CCSHP PGE+   AAQRRL +EMG  C L P+F  HYRA +  G IE+ELVHVFGG  DGPVAP P EVSE  W+    L
Sbjct:   15 IILVDADDRPVGTAGKTEVHRRGLPHRAISVLVRNRQGDILVQRRNPAKYHSGGLWANTCCSHPRPGETTLAAAQRRLPEEMGFTCPLQPLFTTHYRATLENGFIEDELVHVFGGIWDGPVAPAPDEVSEFAWVPFDRL 153          
BLAST of mRNA_P-wetherbeei_contig54155.1.1 vs. uniprot
Match: A0A348G212_9HYPH (Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Blastochloris TaxID=59282 RepID=A0A348G212_9HYPH)

HSP 1 Score: 177 bits (448), Expect = 6.280e-54
Identity = 86/145 (59.31%), Postives = 106/145 (73.10%), Query Frame = 1
Query:    4 TTDHDLVVLVDDNDVAIGTAEKLGAHQRGLKHRAISALVRNSAGEFLLQRRALEKYHSGGLWTNACCSHPLPGESPADAAQRRLMQEMGIACTLSPMFIVHYRADVSGGLIENELVHVFGGTHDGPVAPDPAEVSETRWMTLAAL 438
            T +H  VVL+D  D   GTAEKL AH++GLKH AIS +VR+  G +LLQ+RA  KYHSGGLWTN CCSHP PGE+   AA RRL++EMGIAC L P F+  YRA V   LIE+E+VHVF GT+DG ++PDP EV   RW+++  L
Sbjct:   15 TLEH--VVLLDAADQPAGTAEKLDAHRKGLKHLAISVIVRDRDGRWLLQQRAAGKYHSGGLWTNTCCSHPRPGETVPAAASRRLVEEMGIACALEPAFVTTYRAAVDPDLIEHEVVHVFIGTYDGAISPDPDEVESWRWVSVEDL 157          
BLAST of mRNA_P-wetherbeei_contig54155.1.1 vs. uniprot
Match: A0A212S0S5_RHOAC (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Rhodoblastus acidophilus TaxID=1074 RepID=A0A212S0S5_RHOAC)

HSP 1 Score: 176 bits (446), Expect = 1.050e-53
Identity = 82/146 (56.16%), Postives = 101/146 (69.18%), Query Frame = 1
Query:    1 MTTDHDLVVLVDDNDVAIGTAEKLGAHQRGLKHRAISALVRNSAGEFLLQRRALEKYHSGGLWTNACCSHPLPGESPADAAQRRLMQEMGIACTLSPMFIVHYRADVSGGLIENELVHVFGGTHDGPVAPDPAEVSETRWMTLAAL 438
            M  D + V+LVDD D  +G   K+ AH+ GL+HRAIS  V N  GE LLQRRAL KYHSGGLWTN CC+HP  GE  ADAA RRL +E+G+AC L  + + HYRADV GG +E+E+VH+F    DG   PDPAEV +  W++ A L
Sbjct:    1 MIDDLETVILVDDEDRQVGALGKIEAHRLGLRHRAISVCVTNERGEMLLQRRALSKYHSGGLWTNTCCTHPRVGEDVADAAARRLNEELGVACDLRFLRVTHYRADVGGGFVEDEVVHIFHARFDGEPRPDPAEVMDYAWLSRAEL 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54155.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127ER86_9HYPH2.270e-6868.53Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Rh... [more]
J6UJB3_9RHOB1.600e-5964.75Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Rh... [more]
A0A1G6ECW8_9HYPH1.210e-5759.59Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ba... [more]
A0A327L7C7_9HYPH1.010e-5561.87Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Rh... [more]
A0A0H5BF16_BLAVI1.900e-5562.59Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Bl... [more]
A0A2H6AZ12_9BACT5.240e-5557.45Isopentenyl-diphosphate Delta-isomerase n=1 Tax=ba... [more]
A0A327KH60_9HYPH6.800e-5561.87Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Rh... [more]
A0A327K3U9_9HYPH1.650e-5460.43Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Rh... [more]
A0A348G212_9HYPH6.280e-5459.31Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Bl... [more]
A0A212S0S5_RHOAC1.050e-5356.16Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Rh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54155contigP-wetherbeei_contig54155:93..530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1187851.A33M_1983
Preferred nameidi
PFAMsNUDIX
Model size438
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00455
KEGG koko:K01823
KEGG ReactionR01123
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00095,M00096,M00364,M00365,M00366,M00367
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004452,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016853,GO:0016860,GO:0016863,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0071704,GO:1901576
Exons1
Evalue2.63e-60
EggNOG OGsCOG1443@1|root,COG1443@2|Bacteria,1R9YJ@1224|Proteobacteria,2U5P8@28211|Alphaproteobacteria,3FEEM@34008|Rhodovulum
EC5.3.3.2
DescriptionCatalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
Cds size438
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186809.388584-CDS-P-wetherbeei_contig54155:92..5301683186809.388584-CDS-P-wetherbeei_contig54155:92..530Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54155 93..530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54155.1.1prot_P-wetherbeei_contig54155.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54155 93..530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54155.1.1

>prot_P-wetherbeei_contig54155.1.1 ID=prot_P-wetherbeei_contig54155.1.1|Name=mRNA_P-wetherbeei_contig54155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
MTTDHDLVVLVDDNDVAIGTAEKLGAHQRGLKHRAISALVRNSAGEFLLQ
RRALEKYHSGGLWTNACCSHPLPGESPADAAQRRLMQEMGIACTLSPMFI
VHYRADVSGGLIENELVHVFGGTHDGPVAPDPAEVSETRWMTLAAL
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mRNA from alignment at P-wetherbeei_contig54155:93..530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54155.1.1 ID=mRNA_P-wetherbeei_contig54155.1.1|Name=mRNA_P-wetherbeei_contig54155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig54155:93..530+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACCGACCACGACCTCGTCGTGTTGGTCGACGACAACGACGTTGC TATCGGCACCGCCGAAAAACTCGGCGCACACCAGCGGGGGCTCAAGCATC GCGCCATCTCGGCGCTGGTGCGCAACTCCGCCGGCGAGTTCCTGCTGCAA CGCCGGGCACTGGAAAAATATCACTCCGGCGGATTATGGACCAACGCCTG CTGCAGCCATCCGCTGCCGGGCGAGAGCCCGGCCGACGCGGCGCAGCGTC GCCTGATGCAGGAGATGGGCATCGCCTGCACGCTTTCGCCGATGTTCATC GTGCACTATCGCGCCGACGTGTCCGGCGGACTGATCGAGAACGAGCTGGT GCATGTGTTCGGCGGCACCCACGACGGGCCGGTCGCGCCCGACCCGGCCG AGGTCAGCGAGACGCGATGGATGACGCTCGCCGCGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54155:93..530+

>mRNA_P-wetherbeei_contig54155.1.1 ID=mRNA_P-wetherbeei_contig54155.1.1|Name=mRNA_P-wetherbeei_contig54155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig54155:93..530+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACCGACCACGACCTCGTCGTGTTGGTCGACGACAACGACGTTGC
TATCGGCACCGCCGAAAAACTCGGCGCACACCAGCGGGGGCTCAAGCATC
GCGCCATCTCGGCGCTGGTGCGCAACTCCGCCGGCGAGTTCCTGCTGCAA
CGCCGGGCACTGGAAAAATATCACTCCGGCGGATTATGGACCAACGCCTG
CTGCAGCCATCCGCTGCCGGGCGAGAGCCCGGCCGACGCGGCGCAGCGTC
GCCTGATGCAGGAGATGGGCATCGCCTGCACGCTTTCGCCGATGTTCATC
GTGCACTATCGCGCCGACGTGTCCGGCGGACTGATCGAGAACGAGCTGGT
GCATGTGTTCGGCGGCACCCACGACGGGCCGGTCGCGCCCGACCCGGCCG
AGGTCAGCGAGACGCGATGGATGACGCTCGCCGCGCTC
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