mRNA_P-wetherbeei_contig541.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig541.1.1
Unique NamemRNA_P-wetherbeei_contig541.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig541.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig541contigP-wetherbeei_contig541:2108..3612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1505
Hectar predicted targeting categoryother localisation
Exons1
Cds size912
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186808.6472015-UTR-P-wetherbeei_contig541:2107..21131683186808.6472015-UTR-P-wetherbeei_contig541:2107..2113Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig541 2108..2113 +
1683186808.6678054-UTR-P-wetherbeei_contig541:3025..36121683186808.6678054-UTR-P-wetherbeei_contig541:3025..3612Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig541 3026..3612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186808.657839-CDS-P-wetherbeei_contig541:2113..30251683186808.657839-CDS-P-wetherbeei_contig541:2113..3025Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig541 2114..3025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig541.1.1prot_P-wetherbeei_contig541.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig541 2114..3025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig541.1.1

>prot_P-wetherbeei_contig541.1.1 ID=prot_P-wetherbeei_contig541.1.1|Name=mRNA_P-wetherbeei_contig541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=304bp
MTSPASPAPATAVATVAKTAAAPAKAAAAPAPAPAETAAAAVLAKAAAAI
EPVKTTAVLAPTKSAAASAKAASVKGASSAVPSTLAPAGGTYRAGGSKKD
AAGHGKGADGASDGPGGAKVAGAASQTAALTAIPAVTPAVAVTAAPVAAA
AAMAAATAAPAAAKAPLVTADDGTNDEGPIPGRGNCKHCGDFFRRLDRHQ
PACSSGPQQKLKKLKLASATANIGGAGYGGDGAGGAGGAGGRGGGGSGDG
GIGMQRKRSAAFMEEETLSAAAPSERQGTKKVACAGSHASPDEAVAAAAT
SVI*
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mRNA from alignment at P-wetherbeei_contig541:2108..3612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig541.1.1 ID=mRNA_P-wetherbeei_contig541.1.1|Name=mRNA_P-wetherbeei_contig541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1505bp|location=Sequence derived from alignment at P-wetherbeei_contig541:2108..3612+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGATGACCTCGCCGGCGTCGCCGGCGCCGGCAACGGCCGTGGCGAC
GGTTGCGAAGACTGCTGCGGCGCCGGCAAAGGCCGCGGCGGCGCCGGCTC
CGGCGCCGGCGGAAACCGCTGCGGCGGCGGTGCTGGCGAAGGCCGCTGCT
GCCATTGAGCCGGTGAAGACAACGGCAGTGCTGGCGCCGACTAAATCCGC
GGCAGCTTCAGCGAAGGCTGCCTCGGTGAAGGGCGCGTCATCGGCTGTTC
CCTCGACATTGGCCCCGGCCGGCGGCACGTACAGGGCGGGCGGTTCCAAG
AAGGACGCTGCTGGTCACGGCAAGGGAGCCGACGGCGCCTCTGACGGACC
CGGCGGCGCCAAGGTGGCAGGCGCCGCCTCGCAGACGGCGGCGCTGACCG
CGATACCGGCAGTTACGCCGGCAGTGGCGGTGACGGCAGCGCCGGTGGCA
GCGGCAGCGGCAATGGCAGCCGCAACTGCAGCACCGGCAGCAGCGAAGGC
GCCACTGGTAACGGCGGACGATGGCACCAACGACGAGGGTCCAATCCCCG
GGCGGGGCAACTGCAAGCACTGTGGCGATTTCTTCCGGCGCCTCGACCGC
CACCAGCCCGCTTGCTCGAGCGGGCCGCAACAAAAGCTCAAGAAGCTGAA
GCTCGCTTCTGCGACGGCCAATATCGGTGGTGCGGGCTACGGCGGCGACG
GTGCGGGCGGTGCGGGCGGTGCGGGCGGCCGCGGCGGCGGGGGCAGCGGC
GACGGCGGCATTGGCATGCAGCGCAAGAGGTCTGCAGCATTCATGGAGGA
GGAGACGTTGTCTGCAGCGGCGCCATCGGAGCGTCAAGGGACCAAGAAGG
TGGCCTGTGCAGGCAGCCACGCCTCTCCAGACGAGGCGGTGGCGGCTGCT
GCGACGTCGGTCATTTGACAGGGCCAGCGCGGTAGCATCTGCGCGCCAGT
GGAAGCGGGGGCAGCAATCACCGTCGCTGGTAGTACCAGCTGCCATTCCA
GCTCGGATGCGGCGGACTTGCCGCCGGTGCTGGCAAGAGCTAGAAGGCGG
CGACTTGACTTTTTGATACTTCGCGGAGGCGGGCGTTACGGTGCGGCATA
CCTTGCAGGTCCGACCGCTTCTTCCCGCGGCGGCTTGTTGGGGGCGCGGC
CGGCCGCCTGCCGAAGTAGCAGCGACGGAGCGGCCATCTGGAGCCGCAAC
GGCAAACTGATTCGCTCCCATCTGCAGGAAAATAAAAAGGGATTGGCTGG
GGCCGGGCGGCTGGCGTGTCGGCAGCGACCGCCCGGGATTTACTTAGTGG
GGGGGAAGGCGGCAGCGAAAGCGCACCGAGCCGGGAGCTGCTGAGGAAAG
GGCGGACGGCGAGCCTTCATAGTCTATTGGCGTTCCGGCAGCAGGCAGCT
TGGCACCGTCAGCGTGCAAAACAACGGACAGAAATTTGCGTCATTGGTAG
CCGCTTGCTTCACGCCCTCCTTGTAAATGGCACAACGTTGGGTTACTGAA
CGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig541:2108..3612+

>mRNA_P-wetherbeei_contig541.1.1 ID=mRNA_P-wetherbeei_contig541.1.1|Name=mRNA_P-wetherbeei_contig541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=912bp|location=Sequence derived from alignment at P-wetherbeei_contig541:2108..3612+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTCGCCGGCGTCGCCGGCGCCGGCAACGGCCGTGGCGACGGTTGC
GAAGACTGCTGCGGCGCCGGCAAAGGCCGCGGCGGCGCCGGCTCCGGCGC
CGGCGGAAACCGCTGCGGCGGCGGTGCTGGCGAAGGCCGCTGCTGCCATT
GAGCCGGTGAAGACAACGGCAGTGCTGGCGCCGACTAAATCCGCGGCAGC
TTCAGCGAAGGCTGCCTCGGTGAAGGGCGCGTCATCGGCTGTTCCCTCGA
CATTGGCCCCGGCCGGCGGCACGTACAGGGCGGGCGGTTCCAAGAAGGAC
GCTGCTGGTCACGGCAAGGGAGCCGACGGCGCCTCTGACGGACCCGGCGG
CGCCAAGGTGGCAGGCGCCGCCTCGCAGACGGCGGCGCTGACCGCGATAC
CGGCAGTTACGCCGGCAGTGGCGGTGACGGCAGCGCCGGTGGCAGCGGCA
GCGGCAATGGCAGCCGCAACTGCAGCACCGGCAGCAGCGAAGGCGCCACT
GGTAACGGCGGACGATGGCACCAACGACGAGGGTCCAATCCCCGGGCGGG
GCAACTGCAAGCACTGTGGCGATTTCTTCCGGCGCCTCGACCGCCACCAG
CCCGCTTGCTCGAGCGGGCCGCAACAAAAGCTCAAGAAGCTGAAGCTCGC
TTCTGCGACGGCCAATATCGGTGGTGCGGGCTACGGCGGCGACGGTGCGG
GCGGTGCGGGCGGTGCGGGCGGCCGCGGCGGCGGGGGCAGCGGCGACGGC
GGCATTGGCATGCAGCGCAAGAGGTCTGCAGCATTCATGGAGGAGGAGAC
GTTGTCTGCAGCGGCGCCATCGGAGCGTCAAGGGACCAAGAAGGTGGCCT
GTGCAGGCAGCCACGCCTCTCCAGACGAGGCGGTGGCGGCTGCTGCGACG
TCGGTCATTTGA
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