mRNA_P-wetherbeei_contig54046.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54046.1.1
Unique NamemRNA_P-wetherbeei_contig54046.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54046.1.1 vs. uniprot
Match: UPI001A8FC17E (nuclear transport factor 2 family protein n=1 Tax=Nocardioides sp. S5 TaxID=2017486 RepID=UPI001A8FC17E)

HSP 1 Score: 177 bits (450), Expect = 4.340e-56
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    1 GEVFDRDGWVRLNADYPGFERMYLEDLVAADDRGVLRARVTCAGSDGADQVFVVASFASVQDGLLAELTEVWTDVDQQAPDGTRPLA 261
            GEVFDRDGWVRLNADYPGFERM+LEDLVAADDRGVLRARVTCAGSDGADQVFVVASFASVQDGLLAELTEVWTDVDQQAPDGTRPLA
Sbjct:   38 GEVFDRDGWVRLNADYPGFERMHLEDLVAADDRGVLRARVTCAGSDGADQVFVVASFASVQDGLLAELTEVWTDVDQQAPDGTRPLA 124
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BLAST of mRNA_P-wetherbeei_contig54046.1.1 vs. uniprot
Match: A0A6L6AN55_9ACTN (SnoaL-like domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A6L6AN55_9ACTN)

HSP 1 Score: 150 bits (379), Expect = 2.890e-45
Identity = 72/87 (82.76%), Postives = 78/87 (89.66%), Query Frame = 1 
Query:    1 GEVFDRDGWVRLNADYPGFERMYLEDLVAADDRGVLRARVTCAGSDGADQVFVVASFASVQDGLLAELTEVWTDVDQQAPDGTRPLA 261
            GEVFDRDGWVRLNADYPGF+RM++EDLVAADDRGVL A+V      G DQVF VASFA+V+DGLLAELTEVWTDVDQQAPDGTRPLA
Sbjct:   38 GEVFDRDGWVRLNADYPGFQRMHVEDLVAADDRGVLHAKVIGTEPHGGDQVFAVASFATVRDGLLAELTEVWTDVDQQAPDGTRPLA 124
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BLAST of mRNA_P-wetherbeei_contig54046.1.1 vs. uniprot
Match: UPI001E3E6322 (ester cyclase n=1 Tax=Nocardioides furvisabuli TaxID=375542 RepID=UPI001E3E6322)

HSP 1 Score: 149 bits (376), Expect = 8.800e-45
Identity = 72/89 (80.90%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:    1 GEVFDRDGWVRLNADYPGFERMYLEDLVAADDRGVLRARVTCAGS--DGADQVFVVASFASVQDGLLAELTEVWTDVDQQAPDGTRPLA 261
            GEVFDRDGWVRLNADYPGF+ M++EDLVAADDRG+LRARVT  G+  DG+D+VF VASFA+V+DGLLAELTEVW DVDQQAPDGTRP A
Sbjct:   38 GEVFDRDGWVRLNADYPGFQHMHVEDLVAADDRGILRARVTGTGTGPDGSDRVFAVASFATVRDGLLAELTEVWIDVDQQAPDGTRPRA 126
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BLAST of mRNA_P-wetherbeei_contig54046.1.1 vs. uniprot
Match: A0A2P2CF93_9ZZZZ (SnoaL-like domain-containing protein n=1 Tax=metagenome TaxID=256318 RepID=A0A2P2CF93_9ZZZZ)

HSP 1 Score: 131 bits (329), Expect = 1.160e-37
Identity = 64/86 (74.42%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 GEVFDRDGWVRLNADYPGFERMYLEDLVAADDRGVLRARVTCAGSDGADQVFVVASFASVQDGLLAELTEVWTDVDQQAPDGTRPL 258
            GEVFDR+ WVRLNADYPGF RM+LEDLVA  DRGVLRARVT  GSDG D  F VASFA+V++G L EL EVW DVDQQ P GTRP+
Sbjct:   38 GEVFDREQWVRLNADYPGFGRMHLEDLVADGDRGVLRARVTGTGSDGKDVAFEVASFATVREGRLVELVEVWADVDQQPPAGTRPV 123
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BLAST of mRNA_P-wetherbeei_contig54046.1.1 vs. uniprot
Match: A0A1I1A7V9_9ACTN (SnoaL-like domain-containing protein n=1 Tax=Nocardioides alpinus TaxID=748909 RepID=A0A1I1A7V9_9ACTN)

HSP 1 Score: 130 bits (327), Expect = 2.400e-37
Identity = 61/87 (70.11%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 GEVFDRDGWVRLNADYPGFERMYLEDLVAADDRGVLRARVTCAGSDGADQVFVVASFASVQDGLLAELTEVWTDVDQQAPDGTRPLA 261
            GEVFDRD WVRLNADYPGF+R+  +DLV   DRGVLRA V   G DG++QV  VASFA+V+DGL+ ELTEVW DVDQ  P+GTRPLA
Sbjct:   38 GEVFDRDRWVRLNADYPGFQRLLAQDLVVDGDRGVLRAEVAGTGPDGSEQVLAVASFATVRDGLIVELTEVWADVDQAPPEGTRPLA 124
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BLAST of mRNA_P-wetherbeei_contig54046.1.1 vs. uniprot
Match: UPI001C12D274 (HIT domain-containing protein n=1 Tax=Nocardioides sp. zg-1308 TaxID=2736253 RepID=UPI001C12D274)

HSP 1 Score: 133 bits (335), Expect = 1.630e-36
Identity = 65/88 (73.86%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 GEVFDRDGWVRLNADYPGFERMYLEDLVA---ADDRGVLRARVTCAGSDGADQVFVVASFASVQDGLLAELTEVWTDVDQQAPDGTRP 255
            GEVFDRDGWVRLNADYPGF+R++LEDLVA     DRGVLRARV      G + VF VASFA+++DGLL+ELTEVWTDVDQQAP+GTRP
Sbjct:  208 GEVFDRDGWVRLNADYPGFQRLHLEDLVADGDRGDRGVLRARVVGTSGTGGELVFAVASFATMRDGLLSELTEVWTDVDQQAPEGTRP 295
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BLAST of mRNA_P-wetherbeei_contig54046.1.1 vs. uniprot
Match: UPI001AD4EA5C (Uncharacterized protein n=1 Tax=Planomonospora venezuelensis TaxID=1999 RepID=UPI001AD4EA5C)

HSP 1 Score: 127 bits (320), Expect = 2.710e-36
Identity = 63/85 (74.12%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    1 GEVFDRDGWVRLNADYPGFERMYLEDLVAADDRGVLRARVTCAGSDGADQVFVVASFASVQDGLLAELTEVWTDVDQQAPDGTRP 255
            GEVFDRDGWVR NADYPGFERM  EDLVA  +RGVLRARVT  G  G +  F VASFA+V+DGLLAEL EVW DVD Q P GTRP
Sbjct:   38 GEVFDRDGWVRFNADYPGFERMNAEDLVADGERGVLRARVTGRGGAGKELEFAVASFATVRDGLLAELVEVWADVDTQPPAGTRP 122
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BLAST of mRNA_P-wetherbeei_contig54046.1.1 vs. uniprot
Match: UPI001642A5ED (nuclear transport factor 2 family protein n=1 Tax=Nocardioides sp. zg-1228 TaxID=2763008 RepID=UPI001642A5ED)

HSP 1 Score: 125 bits (315), Expect = 1.470e-35
Identity = 63/84 (75.00%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    1 GEVFDRDGWVRLNADYPGFERMYLEDLVAADDRGVLRARVTCAGSDGADQVFVVASFASVQDGLLAELTEVWTDVDQQAPDGTR 252
            GEVFDRDGWVRLNADYPGFERM +EDLVA  DRG LRARVT     G    F VASFA+V+DGLL EL EVWTDVDQQ P GTR
Sbjct:   38 GEVFDRDGWVRLNADYPGFERMCVEDLVADGDRGALRARVTSTDDAGERLGFAVASFATVRDGLLHELVEVWTDVDQQPPAGTR 121
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BLAST of mRNA_P-wetherbeei_contig54046.1.1 vs. uniprot
Match: A0A4Q2RWD0_9ACTN (Nuclear transport factor 2 family protein n=1 Tax=Nocardioides oleivorans TaxID=273676 RepID=A0A4Q2RWD0_9ACTN)

HSP 1 Score: 125 bits (313), Expect = 3.150e-35
Identity = 58/84 (69.05%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:    1 GEVFDRDGWVRLNADYPGFERMYLEDLVAADDRGVLRARVTCAGSDGADQVFVVASFASVQDGLLAELTEVWTDVDQQAPDGTR 252
            GE FD+D WVR NADYPGFERM++EDLVAA DRGV+RARV   G +G + VF VASFA+V+D L+ +LTEVW DV Q+APDGTR
Sbjct:   38 GEEFDKDAWVRFNADYPGFERMHVEDLVAAGDRGVVRARVVGRGDEGEELVFAVASFATVRDDLVVDLTEVWADVGQEAPDGTR 121
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BLAST of mRNA_P-wetherbeei_contig54046.1.1 vs. uniprot
Match: UPI001747CE3C (nuclear transport factor 2 family protein n=1 Tax=Nocardioides cavernae TaxID=1921566 RepID=UPI001747CE3C)

HSP 1 Score: 124 bits (311), Expect = 6.160e-35
Identity = 59/85 (69.41%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    1 GEVFDRDGWVRLNADYPGFERMYLEDLVAADDRGVLRARVTCAGSDGADQVFVVASFASVQDGLLAELTEVWTDVDQQAPDGTRP 255
            GEVFDR+ WVR NADYPGFERM++ED+V   DRGVLRARVT  G  G    F VASFA+ +DGLL EL EVW DVDQQ P+GTRP
Sbjct:   38 GEVFDREEWVRFNADYPGFERMHVEDVVVEGDRGVLRARVTGKGGTGEALEFAVASFATARDGLLVELVEVWADVDQQPPEGTRP 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54046.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001A8FC17E4.340e-5698.85nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A6L6AN55_9ACTN2.890e-4582.76SnoaL-like domain-containing protein n=3 Tax=root ... [more]
UPI001E3E63228.800e-4580.90ester cyclase n=1 Tax=Nocardioides furvisabuli Tax... [more]
A0A2P2CF93_9ZZZZ1.160e-3774.42SnoaL-like domain-containing protein n=1 Tax=metag... [more]
A0A1I1A7V9_9ACTN2.400e-3770.11SnoaL-like domain-containing protein n=1 Tax=Nocar... [more]
UPI001C12D2741.630e-3673.86HIT domain-containing protein n=1 Tax=Nocardioides... [more]
UPI001AD4EA5C2.710e-3674.12Uncharacterized protein n=1 Tax=Planomonospora ven... [more]
UPI001642A5ED1.470e-3575.00nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A4Q2RWD0_9ACTN3.150e-3569.05Nuclear transport factor 2 family protein n=1 Tax=... [more]
UPI001747CE3C6.160e-3569.41nuclear transport factor 2 family protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54046contigP-wetherbeei_contig54046:3..266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog926564.KI911621_gene3888
PFAMsSnoaL_2
Model size264
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.63e-27
EggNOG OGsCOG3631@1|root,COG3631@2|Bacteria,2GVR7@201174|Actinobacteria
DescriptionSnoaL-like domain
Cds size264
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.996177-CDS-P-wetherbeei_contig54046:2..2661683186807.996177-CDS-P-wetherbeei_contig54046:2..266Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54046 3..266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54046.1.1prot_P-wetherbeei_contig54046.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54046 3..266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54046.1.1

>prot_P-wetherbeei_contig54046.1.1 ID=prot_P-wetherbeei_contig54046.1.1|Name=mRNA_P-wetherbeei_contig54046.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
GEVFDRDGWVRLNADYPGFERMYLEDLVAADDRGVLRARVTCAGSDGADQ
VFVVASFASVQDGLLAELTEVWTDVDQQAPDGTRPLA*
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mRNA from alignment at P-wetherbeei_contig54046:3..266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54046.1.1 ID=mRNA_P-wetherbeei_contig54046.1.1|Name=mRNA_P-wetherbeei_contig54046.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig54046:3..266+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGAGGTGTTCGACCGCGACGGGTGGGTCAGGCTCAACGCCGACTACCC
GGGCTTCGAGCGCATGTACCTCGAGGACCTCGTCGCAGCCGACGACCGTG
GCGTCCTCCGAGCGCGAGTGACCTGCGCTGGGTCCGACGGCGCGGACCAG
GTCTTCGTGGTCGCCAGCTTCGCCAGCGTCCAGGACGGCCTCCTCGCCGA
GCTCACGGAGGTGTGGACCGACGTCGACCAGCAGGCTCCCGACGGCACCC
GGCCACTAGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54046:3..266+

>mRNA_P-wetherbeei_contig54046.1.1 ID=mRNA_P-wetherbeei_contig54046.1.1|Name=mRNA_P-wetherbeei_contig54046.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig54046:3..266+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGAGGTGTTCGACCGCGACGGGTGGGTCAGGCTCAACGCCGACTACCC
GGGCTTCGAGCGCATGTACCTCGAGGACCTCGTCGCAGCCGACGACCGTG
GCGTCCTCCGAGCGCGAGTGACCTGCGCTGGGTCCGACGGCGCGGACCAG
GTCTTCGTGGTCGCCAGCTTCGCCAGCGTCCAGGACGGCCTCCTCGCCGA
GCTCACGGAGGTGTGGACCGACGTCGACCAGCAGGCTCCCGACGGCACCC
GGCCACTAGCCTGA
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