mRNA_P-wetherbeei_contig54041.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54041.1.1
Unique NamemRNA_P-wetherbeei_contig54041.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54041.1.1 vs. uniprot
Match: A0A3C2B3L3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B3L3_9ACTN)

HSP 1 Score: 194 bits (494), Expect = 5.560e-58
Identity = 104/142 (73.24%), Postives = 121/142 (85.21%), Query Frame = 1
Query:    1 GLNRLLKMVLVVAVVGTAGAFLLGPFVIKKFYDSELSGRTLATLALSSAVYMFALALAQAVIALRGHMLVAFGWASAGIIFLLVTWLN-DEDLFRRVELGLVASSVAALVAFAFALRHRLRIGVVPTGESIMEALTDMPLEN 423
            GL RLLK+V+VVA +GTAGA+LLGPFVI+KFYDSELSG TLA LA  SA+YM ALALAQAVIALRGH LVA GWA+AG+ FLLVTWLN  +DLFRRVE+GLV+SS AAL+AFA ALRHRL  GV P+  S+++A+TDMP E 
Sbjct:  290 GLKRLLKVVVVVAAIGTAGAYLLGPFVIEKFYDSELSGSTLAVLAFGSALYMLALALAQAVIALRGHALVALGWATAGVTFLLVTWLNGSDDLFRRVEIGLVSSSAAALLAFALALRHRLASGVEPSTHSVIDAITDMPFET 431          
BLAST of mRNA_P-wetherbeei_contig54041.1.1 vs. uniprot
Match: A0A6L6BHG2_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A6L6BHG2_9ACTN)

HSP 1 Score: 169 bits (427), Expect = 6.370e-48
Identity = 87/141 (61.70%), Postives = 108/141 (76.60%), Query Frame = 1
Query:    1 GLNRLLKMVLVVAVVGTAGAFLLGPFVIKKFYDSELSGRTLATLALSSAVYMFALALAQAVIALRGHMLVAFGWASAGIIFLLVTWLNDEDLFRRVELGLVASSVAALVAFAFALRHRLRIGVVPTGESIMEALTDMPLEN 423
            G  +LL +V+ V   GT GAF +GPF+I+K Y +EL  RT+A LA+ SA+YM ALALAQAVIALRGH LV  GW S  + F+LVTWL+ +DLFRR+E GLVASS AALV+F  ALRH+LR GV PT  S+M+A+TDMP E+
Sbjct:  302 GFRKLLVLVVAVGAAGTVGAFAVGPFIIRKMYGAELHARTMAMLAVGSAIYMLALALAQAVIALRGHALVGIGWGSGMVTFVLVTWLSSDDLFRRIEYGLVASSAAALVSFWIALRHKLRTGVEPTHGSMMDAITDMPFES 442          
BLAST of mRNA_P-wetherbeei_contig54041.1.1 vs. uniprot
Match: A0A7W1CLE8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1CLE8_9ACTN)

HSP 1 Score: 167 bits (423), Expect = 2.290e-47
Identity = 88/141 (62.41%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 GLNRLLKMVLVVAVVGTAGAFLLGPFVIKKFYDSELSGRTLATLALSSAVYMFALALAQAVIALRGHMLVAFGWASAGIIFLLVTWLNDEDLFRRVELGLVASSVAALVAFAFALRHRLRIGVVPTGESIMEALTDMPLEN 423
            GL  L+ +V  V VVGT GAF+LGPFVI+  YD++LSGRTLA LAL SA YM ALALAQAVIAL+GH LV+ GW +  + FLL TWL+ +DLF+RVE+GL+ SSVAA+  FA  LR++L  GVVP  +S+M+A+TDMPLE 
Sbjct:  298 GLKLLMMVVAAVGVVGTVGAFVLGPFVIEIVYDADLSGRTLAMLALGSACYMVALALAQAVIALKGHALVSLGWITGVVAFLLATWLSSDDLFKRVEIGLLTSSVAAMTTFAITLRYKLASGVVPDTDSMMDAITDMPLET 438          
BLAST of mRNA_P-wetherbeei_contig54041.1.1 vs. uniprot
Match: A0A4R7I1I7_9ACTN (O-antigen/teichoic acid export membrane protein n=2 Tax=Acidimicrobiales TaxID=84993 RepID=A0A4R7I1I7_9ACTN)

HSP 1 Score: 166 bits (419), Expect = 9.500e-47
Identity = 86/141 (60.99%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 GLNRLLKMVLVVAVVGTAGAFLLGPFVIKKFYDSELSGRTLATLALSSAVYMFALALAQAVIALRGHMLVAFGWASAGIIFLLVTWLNDEDLFRRVELGLVASSVAALVAFAFALRHRLRIGVVPTGESIMEALTDMPLEN 423
            GL +L+ +V  V VVGTAGAF++GPFVI+  YD+ELSGRTLA LALSSA+YM  LA AQAVIAL+GH  VA GW+   ++F+L TWL+ + LFRR+E+GLV SS +AL  FAFALR +L  G  PT +S+M+A+TDMP+E 
Sbjct:  301 GLRKLMYLVAAVGVVGTAGAFIIGPFVIETVYDTELSGRTLAMLALSSAIYMAGLATAQAVIALQGHKWVALGWSVGVVMFVLGTWLSSDLLFRRIEIGLVISSASALAIFAFALRQKLSSGATPTSDSVMDAITDMPVEG 441          
BLAST of mRNA_P-wetherbeei_contig54041.1.1 vs. uniprot
Match: A0A6C7EAZ4_ILUCY (Uncharacterized protein n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7EAZ4_ILUCY)

HSP 1 Score: 166 bits (421), Expect = 9.680e-47
Identity = 87/141 (61.70%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 GLNRLLKMVLVVAVVGTAGAFLLGPFVIKKFYDSELSGRTLATLALSSAVYMFALALAQAVIALRGHMLVAFGWASAGIIFLLVTWLNDEDLFRRVELGLVASSVAALVAFAFALRHRLRIGVVPTGESIMEALTDMPLEN 423
            GL +L+ +VL V V+GT+GAF+LGP  I+  YD+EL+GRTLA LAL SA YM ALA AQAVIAL+GH LVA GW    + F++VTWL  ++LFRR+E+GL+ASSVAAL+ FA ALR RLR GV+P   S+MEA+TD P E+
Sbjct:  338 GLKKLMYVVLAVGVIGTSGAFVLGPLAIEIVYDAELTGRTLAMLALGSACYMMALAFAQAVIALKGHALVAAGWGIGVVTFVVVTWLASDELFRRIEIGLLASSVAALITFAVALRSRLRSGVIPDQASVMEAITDQPFES 478          
BLAST of mRNA_P-wetherbeei_contig54041.1.1 vs. uniprot
Match: A0A6N2DQQ8_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DQQ8_9ACTN)

HSP 1 Score: 164 bits (415), Expect = 2.480e-46
Identity = 86/141 (60.99%), Postives = 109/141 (77.30%), Query Frame = 1
Query:    1 GLNRLLKMVLVVAVVGTAGAFLLGPFVIKKFYDSELSGRTLATLALSSAVYMFALALAQAVIALRGHMLVAFGWASAGIIFLLVTWLNDEDLFRRVELGLVASSVAALVAFAFALRHRLRIGVVPTGESIMEALTDMPLEN 423
            G  RL+ +V+VV   GT GAFL+GP+VI   Y ++L+GRTLA LAL+SA+YM ALA AQAVIALRGH  VA GWAS    F++VTWL+ + LFRR+E+GL+ASS+ ALV FA  LR RLR GV P  +S+M+A+TDMPLE+
Sbjct:  281 GFKRLIVLVIVVGATGTVGAFLIGPWVIDLVYGADLTGRTLAMLALASAIYMLALATAQAVIALRGHAYVAVGWASGFATFIVVTWLSSDLLFRRIEIGLLASSIVALVVFATTLRSRLRTGVEPDADSVMDAITDMPLES 421          
BLAST of mRNA_P-wetherbeei_contig54041.1.1 vs. uniprot
Match: A0A7W0R0Z1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0R0Z1_9ACTN)

HSP 1 Score: 164 bits (414), Expect = 5.100e-46
Identity = 88/140 (62.86%), Postives = 108/140 (77.14%), Query Frame = 1
Query:    1 GLNRLLKMVLVVAVVGTAGAFLLGPFVIKKFYDSELSGRTLATLALSSAVYMFALALAQAVIALRGHMLVAFGWASAGIIFLLVTWLNDEDLFRRVELGLVASSVAALVAFAFALRHRLRIGVVPTGESIMEALTDMPLE 420
            GL RL+K+VL V V+GT GA  +GP VI++ YD+ELSGRTLA LALSSA YM AL+ AQAVIAL+GH +VA GW+     F +VTWL  ++LFRR+ELGLVASS+AA+  FA ALR+RL  GV P   S++EALTD PLE
Sbjct:  300 GLRRLMKVVLTVGVIGTVGALAVGPIVIERVYDAELSGRTLAMLALSSACYMVALSCAQAVIALKGHAMVALGWSIGFGTFCVVTWLAGDELFRRIELGLVASSLAAMTTFALALRNRLNAGVAPDRGSVLEALTDQPLE 439          
BLAST of mRNA_P-wetherbeei_contig54041.1.1 vs. uniprot
Match: A0A7X9Q0F3_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9Q0F3_9ACTN)

HSP 1 Score: 161 bits (408), Expect = 3.220e-45
Identity = 85/141 (60.28%), Postives = 108/141 (76.60%), Query Frame = 1
Query:    1 GLNRLLKMVLVVAVVGTAGAFLLGPFVIKKFYDSELSGRTLATLALSSAVYMFALALAQAVIALRGHMLVAFGWASAGIIFLLVTWLNDEDLFRRVELGLVASSVAALVAFAFALRHRLRIGVVPTGESIMEALTDMPLEN 423
            G  +L+ +VLVV   G  G++LLGPF+I+K YD+EL+ RTLA LAL SA+YM ALALAQAVIAL+GH LV  GW      F++VTWL+ +DLFRR+E GLVASS+ A+VAFA ALR++LR G  PT  S+MEA+ DMP E+
Sbjct:  290 GFRKLMYVVLVVGAGGVVGSYLLGPFIIRKMYDAELTSRTLAMLALGSALYMVALALAQAVIALKGHALVGVGWGLGMAGFIVVTWLSSDDLFRRIEYGLVASSMVAMVAFAVALRYKLRSGSEPTHASVMEAIIDMPFES 430          
BLAST of mRNA_P-wetherbeei_contig54041.1.1 vs. uniprot
Match: A0A7Y1ZVA7_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZVA7_9ACTN)

HSP 1 Score: 162 bits (409), Expect = 4.050e-45
Identity = 84/141 (59.57%), Postives = 109/141 (77.30%), Query Frame = 1
Query:    1 GLNRLLKMVLVVAVVGTAGAFLLGPFVIKKFYDSELSGRTLATLALSSAVYMFALALAQAVIALRGHMLVAFGWASAGIIFLLVTWLNDEDLFRRVELGLVASSVAALVAFAFALRHRLRIGVVPTGESIMEALTDMPLEN 423
            GL RL+ +VL V  VGT+GAF+LGP+ I+  YD+ LSGRTLA LA SSA YM ALA AQAVIAL+GH LVA GW    + FLL TWL+ +++FRRVE+GL+ASS+ A+++F  ALRH+L  G VP  +S+M+A+TDMP E+
Sbjct:  320 GLQRLMLVVLAVGAVGTSGAFVLGPWAIEVVYDASLSGRTLALLAFSSACYMVALATAQAVIALKGHALVALGWGVGVVAFLLGTWLSSDEVFRRVEIGLLASSIGAMLSFGLALRHKLVSGAVPDQDSLMDAITDMPFES 460          
BLAST of mRNA_P-wetherbeei_contig54041.1.1 vs. uniprot
Match: A0A848UL41_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UL41_9ACTN)

HSP 1 Score: 156 bits (394), Expect = 1.090e-44
Identity = 80/141 (56.74%), Postives = 104/141 (73.76%), Query Frame = 1
Query:    1 GLNRLLKMVLVVAVVGTAGAFLLGPFVIKKFYDSELSGRTLATLALSSAVYMFALALAQAVIALRGHMLVAFGWASAGIIFLLVTWLNDEDLFRRVELGLVASSVAALVAFAFALRHRLRIGVVPTGESIMEALTDMPLEN 423
            GL +L+ +V  V ++GT GAFL+GPF I+  Y++ LSGRTLA LALSS  YM  LA AQAVIALRGH  VA GW +  ++F L TWL+ + LFRR+E+GL+ SS  AL  FA ALRH+L++G  PT  S+M+A+TDMP E+
Sbjct:  135 GLRKLMLLVSAVGIIGTLGAFLIGPFAIETVYNATLSGRTLAMLALSSGTYMAGLATAQAVIALRGHAFVAAGWGAGVVMFFLGTWLSSDLLFRRIEIGLLLSSCTALACFALALRHQLQVGAQPTSGSVMDAITDMPFES 275          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54041.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C2B3L3_9ACTN5.560e-5873.24Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6L6BHG2_9ACTN6.370e-4861.70Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A7W1CLE8_9ACTN2.290e-4762.41Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A4R7I1I7_9ACTN9.500e-4760.99O-antigen/teichoic acid export membrane protein n=... [more]
A0A6C7EAZ4_ILUCY9.680e-4761.70Uncharacterized protein n=1 Tax=Ilumatobacter cocc... [more]
A0A6N2DQQ8_9ACTN2.480e-4660.99Uncharacterized protein n=1 Tax=Ilumatobacter sp. ... [more]
A0A7W0R0Z1_9ACTN5.100e-4662.86Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A7X9Q0F3_9ACTN3.220e-4560.28Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
A0A7Y1ZVA7_9ACTN4.050e-4559.57Uncharacterized protein n=1 Tax=Ilumatobacter sp. ... [more]
A0A848UL41_9ACTN1.090e-4456.74Uncharacterized protein n=1 Tax=Ilumatobacter sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54041contigP-wetherbeei_contig54041:1..426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1313172.YM304_28580
PFAMsPolysacc_synt,Polysacc_synt_3
Model size426
Max annot lvl2|Bacteria
KEGG koko:K01992
KEGG TC3.A.1
KEGG ModuleM00254
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0008150,GO:0009987,GO:0044764,GO:0046812,GO:0051704
Exons1
Evalue1.92e-45
EggNOG OGsCOG2244@1|root,COG2244@2|Bacteria
Descriptionpolysaccharide biosynthetic process
Cds size405
COG categoryS
BRITEko00000,ko00002,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.9179175-UTR-P-wetherbeei_contig54041:0..211683186807.9179175-UTR-P-wetherbeei_contig54041:0..21Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54041 1..21 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.9341936-CDS-P-wetherbeei_contig54041:21..4261683186807.9341936-CDS-P-wetherbeei_contig54041:21..426Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54041 22..426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54041.1.1prot_P-wetherbeei_contig54041.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54041 22..426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54041.1.1

>prot_P-wetherbeei_contig54041.1.1 ID=prot_P-wetherbeei_contig54041.1.1|Name=mRNA_P-wetherbeei_contig54041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MVLVVAVVGTAGAFLLGPFVIKKFYDSELSGRTLATLALSSAVYMFALAL
AQAVIALRGHMLVAFGWASAGIIFLLVTWLNDEDLFRRVELGLVASSVAA
LVAFAFALRHRLRIGVVPTGESIMEALTDMPLEN*
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mRNA from alignment at P-wetherbeei_contig54041:1..426+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54041.1.1 ID=mRNA_P-wetherbeei_contig54041.1.1|Name=mRNA_P-wetherbeei_contig54041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig54041:1..426+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCTCAACCGCCTGCTGAAGATGGTGCTCGTGGTCGCCGTCGTCGGCAC CGCCGGCGCCTTCCTGCTCGGACCGTTCGTGATCAAGAAGTTCTACGACT CCGAGCTCAGCGGACGCACCCTCGCCACCTTGGCGCTGAGCAGCGCCGTC TACATGTTCGCCCTCGCCTTGGCGCAGGCCGTGATCGCGTTGCGCGGCCA CATGCTGGTCGCCTTCGGCTGGGCGTCGGCCGGCATCATCTTCCTGCTCG TGACCTGGCTCAACGACGAGGACCTGTTCCGGCGCGTCGAGCTCGGCCTG GTTGCATCATCGGTCGCCGCGCTGGTGGCGTTCGCGTTCGCCCTGCGTCA CCGCCTGCGCATCGGCGTCGTGCCGACCGGCGAGTCGATCATGGAAGCGC TCACCGACATGCCGCTGGAGAACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54041:1..426+

>mRNA_P-wetherbeei_contig54041.1.1 ID=mRNA_P-wetherbeei_contig54041.1.1|Name=mRNA_P-wetherbeei_contig54041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig54041:1..426+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTCGTGGTCGCCGTCGTCGGCACCGCCGGCGCCTTCCTGCTCGG
ACCGTTCGTGATCAAGAAGTTCTACGACTCCGAGCTCAGCGGACGCACCC
TCGCCACCTTGGCGCTGAGCAGCGCCGTCTACATGTTCGCCCTCGCCTTG
GCGCAGGCCGTGATCGCGTTGCGCGGCCACATGCTGGTCGCCTTCGGCTG
GGCGTCGGCCGGCATCATCTTCCTGCTCGTGACCTGGCTCAACGACGAGG
ACCTGTTCCGGCGCGTCGAGCTCGGCCTGGTTGCATCATCGGTCGCCGCG
CTGGTGGCGTTCGCGTTCGCCCTGCGTCACCGCCTGCGCATCGGCGTCGT
GCCGACCGGCGAGTCGATCATGGAAGCGCTCACCGACATGCCGCTGGAGA
ACTGA
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