mRNA_P-wetherbeei_contig5403.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5403.1.1 vs. uniprot
Match: D7G6L9_ECTSI (BNR repeat domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6L9_ECTSI) HSP 1 Score: 105 bits (263), Expect = 8.380e-23 Identity = 55/150 (36.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query: 190 VVSVAAGSGTSFAVTEAGELFSWGQGRFGALGTGSEADRALPTRLDCFGEKRRSAVAHVSAGRHHSIAIT-RSRRTYVWGDDRFGQLGIGRAQTGNGGRHQNRPVEISWPAVMTPSQTSAGGRHTLCLVEVAGAPPGRETAVFSWGARGH 636
V +AAG +SF VT+ GE++SWG G+FG LG G + R P+R+ F E + + VSAG+ H + +T ++ Y WG + +GQLG TG G + PV I W TP + SAG H++ +V++ R+ ++WG H
Sbjct: 132 VKELAAGFASSFLVTDFGEVWSWGSGKFGCLGLGDDESRWFPSRIPLFAENQPATAETVSAGKWHVLCLTQKTHEVYAWGRNNWGQLG-----TGEAGECERSPVAIRWTKRETPLKISAGADHSVAMVDLLRPNQRRDIVAYAWGNPDH 276
BLAST of mRNA_P-wetherbeei_contig5403.1.1 vs. uniprot
Match: A0A7S1CQ37_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ37_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 3.960e-21 Identity = 68/208 (32.69%), Postives = 102/208 (49.04%), Query Frame = 1
Query: 43 PCLVSSLP-SPVSAVACGYNHNVFLLVDGSVFAFG------------MAASNGRVAGLDTVRVVSVAAGSGTSFAVTEAGELFSWGQGRFGALGTGSEADRALPTRLDCFGEKRRSAVAHVSAGRHHSIAITRSRRTYVWGDDRFGQLGIGRAQTGNGGRHQNRPVEISWPAVMTPSQTSAGGRHTLCLVEVAGAPPGRETAVFSWGA 627
P LV+ L + + +VA G H + G V+ +G +A + G+V GLD V+V +VA G + A+T+ G +F+WG GR+GALG GS+AD P ++D FG +R + VS GR H++A+ + WG D G + G G R+ P + + AG +H+L + E VFSWGA
Sbjct: 96 PRLVAELAGTEIRSVAVGDTHMAAVTATGEVWTWGKPLGGRLGHSNSVAGTPGKVEGLDGVKVAAVACGWNHTVALTDDGRVFTWGIGRYGALGNGSKADSKFPLQVDGFGARR---IVQVSCGRDHTLALADDGSVFAWGSDDNGAVAAG------GARYVTSPQAVRSLRGRKCKRVVAGEQHSLAIAE--------NGDVFSWGA 286
BLAST of mRNA_P-wetherbeei_contig5403.1.1 vs. uniprot
Match: UPI001E82FE0E (probable E3 ubiquitin-protein ligase HERC6 n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI001E82FE0E) HSP 1 Score: 96.7 bits (239), Expect = 1.480e-19 Identity = 63/182 (34.62%), Postives = 90/182 (49.45%), Query Frame = 1
Query: 73 VSAVACGYNHNVFLLVDGSVFAFGMAASN--GR--------------VAGLDTVRVVSVAAGSGTSFAVTEAGELFSWGQGRFGALGTGSEADRALPTRLDCFGEKRRSAVAHVSAGRHHSIAITRSRRTYVWGDDRFGQLGIGRAQTGNGGRHQNRPVEISWPAVMTPSQTSAGGRHTLCL 570
V VACG H + L DGSV + G A GR + L+ V+ V+ G S A+ G +FSWG G FG LGTG DR +P ++D + V V+ G HSIA+T+ R + WG + +GQLGIG+ + +G RP ++ + +Q +AGG H+ L
Sbjct: 38 VVLVACGERHTLLLHADGSVSSCGDNARGQLGRRLPAGQQRSSVPEQIQALEAQAVIHVSCGKDHSLAICSNGSVFSWGAGTFGQLGTGELKDRLIPKKIDGLSTFK---VIQVACGHSHSIALTKDGRVFSWGQNIYGQLGIGKEVSSHG-----RPQHVTALDGIPLAQVAAGGAHSFAL 211
BLAST of mRNA_P-wetherbeei_contig5403.1.1 vs. uniprot
Match: A0A6P8SAL9_GEOSA (probable E3 ubiquitin-protein ligase HERC6 isoform X1 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8SAL9_GEOSA) HSP 1 Score: 94.4 bits (233), Expect = 9.340e-19 Identity = 69/199 (34.67%), Postives = 100/199 (50.25%), Query Frame = 1
Query: 73 VSAVACGYNHNVFLLVDGSVFAFGM-------------AASNGRVAGLDTVRVVSVAAGSGTSFAVTEAGELFSWGQGRFGALGTGSEADRAL-PTRLD-CFGEKRRSAVAHVSAGRHHSIAITRSRRTYVWGDDRFGQLGIGRAQTGNGGRHQNRPVEISWPAVMTPSQTSAGGRHTLCLVEVAGAPPGRETAVFSWG 624
V VACG H +FLL DG+V + G A G++ L+ ++ V+ G S AV G +FSWG G G LGTG +++L P ++D F K V V+ G +HSIA+ + R Y WG ++ GQLG+G+ G Q P ++ + +Q +AGG H+L L ++GA VF WG
Sbjct: 31 VREVACGSGHCLFLLEDGTVTSCGHNRRGQLGRRSQDGGAQRGQIQALEAQSIIHVSCGKEHSLAVCSRGCVFSWGAGSEGQLGTGQFKEQSLIPKKIDGIFNVK----VIQVACGHYHSIALLKDGRLYSWGQNKNGQLGLGK-----GFSSQASPQRVTSLEGIPLAQVAAGGAHSLAL-SLSGA-------VFGWG 212
BLAST of mRNA_P-wetherbeei_contig5403.1.1 vs. uniprot
Match: UPI000750010E (probable E3 ubiquitin-protein ligase HERC6 n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI000750010E) HSP 1 Score: 93.2 bits (230), Expect = 2.380e-18 Identity = 62/182 (34.07%), Postives = 90/182 (49.45%), Query Frame = 1
Query: 73 VSAVACGYNHNVFLLVDGSVFAFGMAASN--------GR--------VAGLDTVRVVSVAAGSGTSFAVTEAGELFSWGQGRFGALGTGSEADRALPTRLDCFGEKRRSAVAHVSAGRHHSIAITRSRRTYVWGDDRFGQLGIGRAQTGNGGRHQNRPVEISWPAVMTPSQTSAGGRHTLCL 570
V VACG H +FL DG V + G A GR + L+ +V V+ G S AV G +FSWG G FG LGTG DR + +++ + + V+ G +HS+A+T+ R + WG + +GQLGIG+ + + GR Q+ P P +Q +AGG H+ L
Sbjct: 160 VVLVACGERHTLFLHPDGGVSSCGDNARGQLGRRLPAGRQRSSRPEQIQALEAQTIVHVSCGKEHSLAVCSNGRVFSWGAGTFGQLGTGELKDRLIAKKIEGLSTCK---IIQVACGHYHSVALTKDGRVFSWGQNSYGQLGIGK-EVSSQGRPQHIPALDGIPL----AQVAAGGAHSFAL 333
BLAST of mRNA_P-wetherbeei_contig5403.1.1 vs. uniprot
Match: A0A847JRK0_9BACT (Uncharacterized protein n=1 Tax=Chthonomonadales bacterium TaxID=2282151 RepID=A0A847JRK0_9BACT) HSP 1 Score: 92.8 bits (229), Expect = 2.990e-18 Identity = 66/187 (35.29%), Postives = 96/187 (51.34%), Query Frame = 1
Query: 49 LVSSLPSPVSAVACGYNHNVFLLVDGSVFAFG--------MAASNGRVAGLDTV-----RVVSVAAGSGTSFAVTEAGELFSWGQGRFGALGTGSEADRALPTRLDCFGEKRRSAVAHVSAGRHHSIAITRSRRTYVWGDDRFGQLGIGRAQTGNGGRHQNRPVEISWPAVMTPSQTSAGGRHTLCL 570
LVS + V A+A GY H++ LL DG +FA+G + R+A ++ RV +V+AG + A+TE G L++WG G LG G + R P R+ ++V VSAG HHS+A+T + WG + GQLG G Q+ + RP EI + PS +AGG H++ L
Sbjct: 199 LVSGPITGVKAIAGGYGHSMVLLNDGRLFAWGWNGYGQLGLGDKRDRLAPVEVTELLGRRVAAVSAGFAHTLAITEDGALWAWGLNSDGQLGLGDVSPRLAPVRVAGLAH---ASVEAVSAGGHHSLALTADGLAWGWGYNADGQLGTGDTQS------RARPTEIVALRGVRPSMIAAGGFHSMAL 376
BLAST of mRNA_P-wetherbeei_contig5403.1.1 vs. uniprot
Match: UPI001126289D (probable E3 ubiquitin-protein ligase HERC6 n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI001126289D) HSP 1 Score: 91.3 bits (225), Expect = 1.080e-17 Identity = 65/198 (32.83%), Postives = 97/198 (48.99%), Query Frame = 1
Query: 73 VSAVACGYNHNVFLLVDGSVFAFGM-------------AASNGRVAGLDTVRVVSVAAGSGTSFAVTEAGELFSWGQGRFGALGTGSEADRAL-PTRLDCFGEKRRSAVAHVSAGRHHSIAITRSRRTYVWGDDRFGQLGIGRAQTGNGGRHQNRPVEISWPAVMTPSQTSAGGRHTLCLVEVAGAPPGRETAVFSWG 624
V VACG H +FLL DG+V + G A G++ L+ +V V+ G S AV G +F+WG G G LG G +++L P R+D + + V V+ G +HSIA+ + R + WG + +GQLG+G+ G Q P + + +Q +AGG H+ L ++GA VF WG
Sbjct: 38 VQEVACGGRHCLFLLEDGTVTSCGHNQRGQLGRKSRGGGAERGQIQALEAQSIVHVSCGKEHSLAVCSRGHVFAWGAGSEGQLGIGQFKEQSLIPKRIDGIFKVK---VIQVTCGHYHSIALLKDGRVFSWGQNNYGQLGLGK-----GFGSQVSPQRVMSLEGIPLAQVAAGGMHSFAL-SLSGA-------VFGWG 219
BLAST of mRNA_P-wetherbeei_contig5403.1.1 vs. uniprot
Match: A0A7N6FAA9_ANATE (HECT and RLD domain containing E3 ubiquitin protein ligase 3 n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A7N6FAA9_ANATE) HSP 1 Score: 90.5 bits (223), Expect = 1.920e-17 Identity = 69/217 (31.80%), Postives = 106/217 (48.85%), Query Frame = 1
Query: 10 GLELPAVARPNPCLVSSLPSPVSAVACGYNHNVFLLVDGSVFAFGM-----------AASNGRVAGLDTVRVVSVAAGSGTSFAVTEAGELFSWGQGRFGALGTGS-EADRALPTRLDCFGEKRRSAVAHVSAGRHHSIAITRSRRTYVWGDDRFGQLGIGRAQTGNGGRHQNRPVEISWPAVMTPSQTSAGGRHTLCLVEVAGAPPGRETAVFSWG 624
G+E AV P C V S + +ACG+ H++FLL DGSV+ G AS V LDT ++ V++G A+ E G++F+WG G G LG G+ E +P L + + ++ V G H IA++R + + WG + GQLG+G+ + H + + A + +Q +AGG H+ L ++GA VF WG
Sbjct: 15 GVERNAVLEPRNCHVFSGRG-LKEIACGWQHSMFLLRDGSVYTCGSNSCGQLGHDKPGASPELVVALDTQKITMVSSGRAHCVAINEQGQVFAWGAGEGGQLGLGTTETVVRIPRLLKRLCDHQ---ISQVMCGNQHCIALSRDGQLFTWGQNTSGQLGLGKGEPSKLFPHPLKSL-----AGIPLAQITAGGDHSFAL-SLSGA-------VFGWG 214
BLAST of mRNA_P-wetherbeei_contig5403.1.1 vs. uniprot
Match: A0A7N6BZ48_ANATE (HECT and RLD domain containing E3 ubiquitin protein ligase 3 n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A7N6BZ48_ANATE) HSP 1 Score: 90.5 bits (223), Expect = 1.920e-17 Identity = 69/217 (31.80%), Postives = 106/217 (48.85%), Query Frame = 1
Query: 10 GLELPAVARPNPCLVSSLPSPVSAVACGYNHNVFLLVDGSVFAFGM-----------AASNGRVAGLDTVRVVSVAAGSGTSFAVTEAGELFSWGQGRFGALGTGS-EADRALPTRLDCFGEKRRSAVAHVSAGRHHSIAITRSRRTYVWGDDRFGQLGIGRAQTGNGGRHQNRPVEISWPAVMTPSQTSAGGRHTLCLVEVAGAPPGRETAVFSWG 624
G+E AV P C V S + +ACG+ H++FLL DGSV+ G AS V LDT ++ V++G A+ E G++F+WG G G LG G+ E +P L + + ++ V G H IA++R + + WG + GQLG+G+ + H + + A + +Q +AGG H+ L ++GA VF WG
Sbjct: 15 GVERNAVLEPRNCHVFSGRG-LKEIACGWQHSMFLLRDGSVYTCGSNSCGQLGHDKPGASPELVVALDTQKITMVSSGRAHCVAINEQGQVFAWGAGEGGQLGLGTTETVVRIPRLLKRLCDHQ---ISQVMCGNQHCIALSRDGQLFTWGQNTSGQLGLGKGEPSKLFPHPLKSL-----AGIPLAQITAGGDHSFAL-SLSGA-------VFGWG 214
BLAST of mRNA_P-wetherbeei_contig5403.1.1 vs. uniprot
Match: A0A7N6AXP3_ANATE (HECT and RLD domain containing E3 ubiquitin protein ligase 3 n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A7N6AXP3_ANATE) HSP 1 Score: 90.5 bits (223), Expect = 1.960e-17 Identity = 69/217 (31.80%), Postives = 106/217 (48.85%), Query Frame = 1
Query: 10 GLELPAVARPNPCLVSSLPSPVSAVACGYNHNVFLLVDGSVFAFGM-----------AASNGRVAGLDTVRVVSVAAGSGTSFAVTEAGELFSWGQGRFGALGTGS-EADRALPTRLDCFGEKRRSAVAHVSAGRHHSIAITRSRRTYVWGDDRFGQLGIGRAQTGNGGRHQNRPVEISWPAVMTPSQTSAGGRHTLCLVEVAGAPPGRETAVFSWG 624
G+E AV P C V S + +ACG+ H++FLL DGSV+ G AS V LDT ++ V++G A+ E G++F+WG G G LG G+ E +P L + + ++ V G H IA++R + + WG + GQLG+G+ + H + + A + +Q +AGG H+ L ++GA VF WG
Sbjct: 15 GVERNAVLEPRNCHVFSGRG-LKEIACGWQHSMFLLRDGSVYTCGSNSCGQLGHDKPGASPELVVALDTQKITMVSSGRAHCVAINEQGQVFAWGAGEGGQLGLGTTETVVRIPRLLKRLCDHQ---ISQVMCGNQHCIALSRDGQLFTWGQNTSGQLGLGKGEPSKLFPHPLKSL-----AGIPLAQITAGGDHSFAL-SLSGA-------VFGWG 214 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5403.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5403.1.1 >prot_P-wetherbeei_contig5403.1.1 ID=prot_P-wetherbeei_contig5403.1.1|Name=mRNA_P-wetherbeei_contig5403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=212bp GRQGLELPAVARPNPCLVSSLPSPVSAVACGYNHNVFLLVDGSVFAFGMAback to top mRNA from alignment at P-wetherbeei_contig5403:242..877- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5403.1.1 ID=mRNA_P-wetherbeei_contig5403.1.1|Name=mRNA_P-wetherbeei_contig5403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig5403:242..877- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5403:242..877- >mRNA_P-wetherbeei_contig5403.1.1 ID=mRNA_P-wetherbeei_contig5403.1.1|Name=mRNA_P-wetherbeei_contig5403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig5403:242..877- (Phaeothamnion wetherbeei SAG_119_79)back to top |