mRNA_P-wetherbeei_contig54001.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54001.1.1
Unique NamemRNA_P-wetherbeei_contig54001.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54001.1.1 vs. uniprot
Match: UPI0009302333 (hypothetical protein n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI0009302333)

HSP 1 Score: 66.2 bits (160), Expect = 2.470e-11
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    1 MDELKRLLRRLXXXXXXXXXXXXXXXXXSEERGYVGALRGTPVVGDEEP--VTAVSPPGQKKASSAAIYVAAATAAAISTLTVY 246
            MD+LKRLLRRL                 +E+RGYVGALRG PV GDEE    T+V+  G KK  SA I++AA  AA +ST+TVY
Sbjct:    1 MDDLKRLLRRLDGLDGSKGLTKNAEQPEAEQRGYVGALRGAPVHGDEETEVATSVAAQGVKKGPSAPIFLAALIAAVVSTVTVY 84
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BLAST of mRNA_P-wetherbeei_contig54001.1.1 vs. uniprot
Match: UPI0003A2596A (hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI0003A2596A)

HSP 1 Score: 50.1 bits (118), Expect = 2.620e-5
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:    1 MDELKRLLRRLXXXXXXXXXXXXXXXXXSEERGYVGALRGTPVVGDEEPVTAVSPPGQKKASSAAIYVAAATAAAISTLTVY 246
            +DELK+LLRRL                 +E+RGYVGALRG P  G EE  +  +   +K  ++  +YVAA  AAA+S LTV+
Sbjct:    9 LDELKKLLRRLDGLDGDKSLGKTPQE--TEQRGYVGALRGAPAPGSEEGRSPAAASAKKSGTN--VYVAAVMAAAVSALTVF 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54001.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI00093023332.470e-1151.19hypothetical protein n=1 Tax=Hyphomicrobium sp. CS... [more]
UPI0003A2596A2.620e-542.68hypothetical protein n=1 Tax=Hyphomicrobium zavarz... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54001contigP-wetherbeei_contig54001:285..533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size249
Hectar predicted targeting categoryother localisation
Exons1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.315705-CDS-P-wetherbeei_contig54001:284..5331683186807.315705-CDS-P-wetherbeei_contig54001:284..533Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54001 285..533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54001.1.1prot_P-wetherbeei_contig54001.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54001 285..533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54001.1.1

>prot_P-wetherbeei_contig54001.1.1 ID=prot_P-wetherbeei_contig54001.1.1|Name=mRNA_P-wetherbeei_contig54001.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
MDELKRLLRRLDGLDGSKGSTKSTEEPESEERGYVGALRGTPVVGDEEPV
TAVSPPGQKKASSAAIYVAAATAAAISTLTVYV
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mRNA from alignment at P-wetherbeei_contig54001:285..533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54001.1.1 ID=mRNA_P-wetherbeei_contig54001.1.1|Name=mRNA_P-wetherbeei_contig54001.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig54001:285..533+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGAGCTGAAGAGGCTCCTCCGCCGTCTCGACGGCTTGGACGGAAG
CAAAGGCTCAACCAAGAGCACCGAGGAGCCCGAGTCCGAGGAACGCGGCT
ATGTCGGCGCGTTGCGGGGCACGCCCGTTGTCGGCGACGAGGAGCCCGTT
ACCGCCGTTTCGCCGCCCGGTCAGAAAAAGGCCTCGAGCGCGGCGATCTA
TGTCGCGGCCGCGACGGCCGCCGCCATCTCGACGCTGACGGTCTATGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54001:285..533+

>mRNA_P-wetherbeei_contig54001.1.1 ID=mRNA_P-wetherbeei_contig54001.1.1|Name=mRNA_P-wetherbeei_contig54001.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig54001:285..533+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGAGCTGAAGAGGCTCCTCCGCCGTCTCGACGGCTTGGACGGAAG
CAAAGGCTCAACCAAGAGCACCGAGGAGCCCGAGTCCGAGGAACGCGGCT
ATGTCGGCGCGTTGCGGGGCACGCCCGTTGTCGGCGACGAGGAGCCCGTT
ACCGCCGTTTCGCCGCCCGGTCAGAAAAAGGCCTCGAGCGCGGCGATCTA
TGTCGCGGCCGCGACGGCCGCCGCCATCTCGACGCTGACGGTCTATGTC
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