mRNA_P-wetherbeei_contig5400.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5400.2.1
Unique NamemRNA_P-wetherbeei_contig5400.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5400.2.1 vs. uniprot
Match: A0A836CMS1_9STRA (Putative apoptosis-inducing factor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMS1_9STRA)

HSP 1 Score: 197 bits (501), Expect = 3.400e-57
Identity = 106/166 (63.86%), Postives = 126/166 (75.90%), Query Frame = 1
Query:    1 QLAKQNTSRKRRNHYRYVIIGAGTTSHAAIESILELEPHADILMLTDEAQLPR--HAALRERPLPSDLL----------ESYNEWRRHVSSKLEAEPHAFSSVPITLLLGHKRLRLDSERRALLLDDGSEVLFDQCLLATAAKPRQFYVLTAEKSAYFLRDRINTL 462
            +LA+QNT+R+RR++Y YVIIGAGTT+ AAIE IL+ +P ADILMLTDEA LPR       + P+                SYNEWRRHVSS+LE EP AFSSVPITLLLG K+LRLD ERRAL LDDGSE+ FD+CL+ATA KPRQFYV+ +EKSAY LR+ +NTL
Sbjct:  112 RLARQNTTRQRRSYYTYVIIGAGTTALAAIEGILQQDPGADILMLTDEAHLPRIDPPGNSDNPVTPPXXXXXXXXXXXPRSYNEWRRHVSSRLENEPDAFSSVPITLLLGRKKLRLDVERRALHLDDGSEIFFDRCLIATAGKPRQFYVIDSEKSAYSLRECVNTL 277          
BLAST of mRNA_P-wetherbeei_contig5400.2.1 vs. uniprot
Match: W7U6U0_9STRA (Apoptosis inducing factor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6U0_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.750e-47
Identity = 85/154 (55.19%), Postives = 116/154 (75.32%), Query Frame = 1
Query:    1 QLAKQNTSRKRRNHYRYVIIGAGTTSHAAIESILELEPHADILMLTDEAQLPRHAALRERPLPSDLLESYNEWRRHVSSKLEAEPHAFSSVPITLLLGH-KRLRLDSERRALLLDDGSEVLFDQCLLATAAKPRQFYVLTAEKSAYFLRDRINT 459
            +LA+QNT+RK +NHY+YVI+GAGTT++AAIE+I   +P ADIL++++EA LP+    R   L + LL SYNEWRRH +SKLE+EP A SS PITLLL + K L+LD +++ +LL DGS + +D+CL+ATA K R  + +   K +Y LRDRINT
Sbjct:  147 KLARQNTTRKVKNHYQYVIMGAGTTAYAAIETIFNRQPQADILLISNEAALPQPDVFRHHALSAPLLHSYNEWRRHTTSKLESEPDAISSAPITLLLNNEKSLQLDVDKQRILLQDGSYITYDRCLIATAGKDRGLWAVDRRKISYSLRDRINT 300          
BLAST of mRNA_P-wetherbeei_contig5400.2.1 vs. uniprot
Match: A0A4D9D2E6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2E6_9STRA)

HSP 1 Score: 171 bits (434), Expect = 3.540e-47
Identity = 85/154 (55.19%), Postives = 116/154 (75.32%), Query Frame = 1
Query:    1 QLAKQNTSRKRRNHYRYVIIGAGTTSHAAIESILELEPHADILMLTDEAQLPRHAALRERPLPSDLLESYNEWRRHVSSKLEAEPHAFSSVPITLLLGH-KRLRLDSERRALLLDDGSEVLFDQCLLATAAKPRQFYVLTAEKSAYFLRDRINT 459
            +LA+QNT+RK +NHY+YVI+GAGTT++AAIE+I   +P ADIL++++EA LP+    R   L + LL SYNEWRRH +SKLE+EP A SS PITLLL + K L+LD +++ +LL DGS + +D+CL+ATA K R  + +   K +Y LRDRINT
Sbjct:  211 KLARQNTTRKVKNHYQYVIMGAGTTAYAAIETIFNRQPQADILLISNEAALPQPDVFRHHALSAPLLHSYNEWRRHTTSKLESEPDAISSAPITLLLNNEKSLQLDVDKQRILLQDGSYITYDRCLIATAGKDRGLWAVDRRKISYSLRDRINT 364          
BLAST of mRNA_P-wetherbeei_contig5400.2.1 vs. uniprot
Match: D0P394_PHYIT (Apoptosis-inducing factor 1, putative n=15 Tax=Phytophthora TaxID=4783 RepID=D0P394_PHYIT)

HSP 1 Score: 142 bits (358), Expect = 6.690e-37
Identity = 78/167 (46.71%), Postives = 113/167 (67.66%), Query Frame = 1
Query:    1 QLAKQNTSRKRRNHYRYVIIGAGTTSHAAIESILELEPHADILMLTDEAQLPR-----------HAALRERPLPSDLLESYNEWRRHVSSKLEAEPHAFSSV---PITLLLGHKRLRLDSERRALLLDDGSEVLFDQCLLATAAKPRQFYVLTAEKSAYFLRDRINT 459
            +LA++ T RK+  H+RYVI+G+GT ++AAIE+I + +  ADIL+L+DE  LPR                E PL   LLESYNEWRRH+S++ E +  A SSV   P+TLLL  + L  D E+  +LL DG+EV +++CL+A+A +PR FYVL +++ +Y L+DR+NT
Sbjct:   55 RLARRFTRRKQTKHHRYVIVGSGTAANAAIEAIRQEDASADILVLSDENALPRLDYGSQQPDDEETEADEPPLAPALLESYNEWRRHLSARFEDD--AASSVGPPPLTLLLDKRPLEFDVEKNRVLLGDGTEVRYERCLVASAGRPRHFYVLDSDRVSYALKDRVNT 219          
BLAST of mRNA_P-wetherbeei_contig5400.2.1 vs. uniprot
Match: A0A484E599_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E599_BRELC)

HSP 1 Score: 142 bits (357), Expect = 9.640e-37
Identity = 75/163 (46.01%), Postives = 109/163 (66.87%), Query Frame = 1
Query:    4 LAKQNTSRKRRNHYRYVIIGAGTTSHAAIESILELEPHADILMLTDEAQLPR----------HAALRERPLPSDLLESYNEWRRHVSSKLEAEPHAFSSVP-ITLLLGHKRLRLDSERRALLLDDGSEVLFDQCLLATAAKPRQFYVLTAEKSAYFLRDRINT 459
            LA++ T RK+  H+ YVI+G+GT ++AAIE+I + +  ADIL+L+DE  LPR               ERPL   LLESYNEWRRH+S++ E E  + +  P +TLLL  + L  D E+  + L DG+EV +D+CL+A+A +PR FYVL +++ +Y L+DR+NT
Sbjct:   60 LARRFTRRKQTKHHSYVIVGSGTAANAAIEAIRQEDASADILVLSDENALPRLDFGVGNDNGDEGGNERPLAPALLESYNEWRRHLSARFEEEVASSAGPPPLTLLLDKRPLEFDVEKNCVFLGDGTEVRYDRCLVASAGRPRHFYVLDSDRVSYALKDRVNT 222          
BLAST of mRNA_P-wetherbeei_contig5400.2.1 vs. uniprot
Match: H3GYI8_PHYRM (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GYI8_PHYRM)

HSP 1 Score: 140 bits (354), Expect = 2.000e-36
Identity = 76/167 (45.51%), Postives = 112/167 (67.07%), Query Frame = 1
Query:    1 QLAKQNTSRKRRNHYRYVIIGAGTTSHAAIESILELEPHADILMLTDEAQLPR------------HAALRERPLPSDLLESYNEWRRHVSSKLE--AEPHAFSSVPITLLLGHKRLRLDSERRALLLDDGSEVLFDQCLLATAAKPRQFYVLTAEKSAYFLRDRINT 459
            +L ++ T RK+   +RYV++G+GT ++AAIE+I + +  ADIL+L+DE  LPR             A  RE PL   LLESYNEWRRH+S++ E  A P A    P+TLLL  + L  D+E+  +LL DG+EV +++CL+A+A +PR FYVL +++ +Y L+DR+NT
Sbjct:   38 RLTRRFTRRKQTKLHRYVVVGSGTAANAAIEAIRQEDASADILVLSDENALPRLDFNAASEPDGDDAEPREEPLAPALLESYNEWRRHLSARFEEDASPSA-GPPPLTLLLDKRPLEFDAEKNRVLLGDGTEVRYERCLIASAGRPRHFYVLDSDRLSYALKDRVNT 203          
BLAST of mRNA_P-wetherbeei_contig5400.2.1 vs. uniprot
Match: M4BZX1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZX1_HYAAE)

HSP 1 Score: 140 bits (353), Expect = 3.760e-36
Identity = 72/169 (42.60%), Postives = 112/169 (66.27%), Query Frame = 1
Query:    1 QLAKQNTSRKRRNHYRYVIIGAGTTSHAAIESILELEPHADILMLTDEAQLPR--------------HAALRERPLPSDLLESYNEWRRHVSSKLEAEPHAFSSVP--ITLLLGHKRLRLDSERRALLLDDGSEVLFDQCLLATAAKPRQFYVLTAEKSAYFLRDRINT 459
            +L+++ T RK+  H+RYVI+G+GT ++AAIE+I + + HADIL+L+DE   PR              H    + PL   LL+SYNEWRRH+S++ E +  + S  P  +TLLL  + L  D E+  +LL DG+EV +++CL+A+A +P+ FYVL +++ +Y L+DR+NT
Sbjct:   58 RLSRRFTRRKQTKHHRYVIVGSGTAANAAIEAIRQEDAHADILVLSDENARPRRDFTSSGRAADDRHHVPPADEPLSPALLQSYNEWRRHLSARFEDDVVSSSGAPPPLTLLLDKRPLEFDVEKNRVLLGDGTEVRYERCLVASAGRPKHFYVLDSDRLSYALKDRVNT 226          
BLAST of mRNA_P-wetherbeei_contig5400.2.1 vs. uniprot
Match: A0A7S2CPJ1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPJ1_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.520e-35
Identity = 67/139 (48.20%), Postives = 101/139 (72.66%), Query Frame = 1
Query:    4 LAKQNTSRKRRNHYRYVIIGAGTTSHAAIESILELEPHADILMLTDEAQLPRHAALRERPLPSDLLESYNEWRRHVSSKLEAEPHAFSSVPITLLLGHK--RLRLDSERRALLLDDGSEVLFDQCLLATAAKPRQFYVL 414
            LA++NT+R ++N + +VI+G G+T+HAAIE I+   P ADILML++++++    A  E  L SD L++YNEWRRH++  L+ EP A  SVP+TLLL     +L LD E ++LLLDDG+ V +++CL+A+   P++FYVL
Sbjct:   38 LARRNTARPQKNFHEFVIVGGGSTAHAAIEGIMMTNPKADILMLSEDSKVHHIDAELEANLSSDFLDAYNEWRRHLNPSLDTEPDAVGSVPLTLLLQRTQDKLHLDVEGKSLLLDDGTSVSYNKCLIASCGTPKEFYVL 176          
BLAST of mRNA_P-wetherbeei_contig5400.2.1 vs. uniprot
Match: A0A3M6VHG2_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHG2_9STRA)

HSP 1 Score: 136 bits (343), Expect = 8.630e-35
Identity = 72/170 (42.35%), Postives = 110/170 (64.71%), Query Frame = 1
Query:    1 QLAKQNTSRKRRNHYRYVIIGAGTTSHAAIESILELEPHADILMLTDEAQLPRHA----------------ALRERPLPSDLLESYNEWRRHVSSKLEAEPHAFSS-VPITLLLGHKRLRLDSERRALLLDDGSEVLFDQCLLATAAKPRQFYVLTAEKSAYFLRDRINT 459
            +L+++ T RK+  H+RYVIIG+ T ++ AIE+I + +  ADIL+L+DE  LPR                  A+ E  L   LLESYNEWRRH+S++ E +  A +   P+TLLL  + L  D E+  +LL DG+E+ +++CL+A+A +PR FYVL +++ +Y L+DR+NT
Sbjct:   52 RLSRRFTRRKQLKHHRYVIIGSSTAANTAIEAIRQEDASADILVLSDENALPRRDFGSFQVGRTYDENSSDAVEEEALAPALLESYNEWRRHLSARFEEDTVASTGPAPLTLLLDKRPLEFDVEKNRVLLGDGTEIRYERCLIASAGRPRHFYVLNSDRVSYALKDRVNT 221          
BLAST of mRNA_P-wetherbeei_contig5400.2.1 vs. uniprot
Match: A0A8K1C9S9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9S9_PYTOL)

HSP 1 Score: 135 bits (340), Expect = 2.290e-34
Identity = 72/168 (42.86%), Postives = 110/168 (65.48%), Query Frame = 1
Query:    1 QLAKQNTSRKRRNHYRYVIIGAGTTSHAAIESILELEPHADILMLTDEAQLPRHAALR----ERPLPSD-LLESYNEWRRHVSSKLEAEPH---------AFSSVPITLLLG-HKRLRLDSERRALLLDDGSEVLFDQCLLATAAKPRQFYVLTAEKSAYFLRDRINT 459
            +LA++ T +  +  +RYVI+G GT +HAAIE+I + +PHADIL+L+DE  LPR  + R    +    +D LLE+YNEWRRH++ KLE +P            S  P+TLL+  +  +  D E+  +LL DG+E+ +++CL+A + +PR FYVL  E+ +Y ++DRINT
Sbjct:   70 RLARRFTRKNNQKFHRYVIVGCGTAAHAAIEAIRQGDPHADILILSDERALPRLESRRGGENDANFVNDALLETYNEWRRHITQKLEEDPTEPVVITGGGVLSPSPVTLLMKKNTTMHFDVEKNRILLSDGTEIQYEKCLIACSGRPRHFYVLDRERISYEIKDRINT 237          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5400.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMS1_9STRA3.400e-5763.86Putative apoptosis-inducing factor 1 n=1 Tax=Tribo... [more]
W7U6U0_9STRA1.750e-4755.19Apoptosis inducing factor n=1 Tax=Nannochloropsis ... [more]
A0A4D9D2E6_9STRA3.540e-4755.19Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D0P394_PHYIT6.690e-3746.71Apoptosis-inducing factor 1, putative n=15 Tax=Phy... [more]
A0A484E599_BRELC9.640e-3746.01Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
H3GYI8_PHYRM2.000e-3645.51Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
M4BZX1_HYAAE3.760e-3642.60Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7S2CPJ1_9STRA2.520e-3548.20Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A3M6VHG2_9STRA8.630e-3542.35Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A8K1C9S9_PYTOL2.290e-3442.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5400contigP-wetherbeei_contig5400:2563..3673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4787.PITG_21182T0
PFAMsAIF_C,Pyr_redox_2
Model size468
Max annot lvl4776|Peronosporales
KEGG koko:K04727
KEGG Pathwayko04210,ko04214,ko04217,map04210,map04214,map04217
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.1e-37
EggNOG OGsCOG0446@1|root,KOG1346@2759|Eukaryota,3QA5E@4776|Peronosporales
DescriptionApoptosis-inducing factor, mitochondrion-associated, C-term
Cds size468
COG categoryT
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.2701387-CDS-P-wetherbeei_contig5400:2562..27641683186807.2701387-CDS-P-wetherbeei_contig5400:2562..2764Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5400 2563..2764 -
1683186807.2810273-CDS-P-wetherbeei_contig5400:3110..32051683186807.2810273-CDS-P-wetherbeei_contig5400:3110..3205Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5400 3111..3205 -
1683186807.2900243-CDS-P-wetherbeei_contig5400:3502..36731683186807.2900243-CDS-P-wetherbeei_contig5400:3502..3673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5400 3503..3673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5400.2.1prot_P-wetherbeei_contig5400.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5400 2563..3673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5400.2.1

>prot_P-wetherbeei_contig5400.2.1 ID=prot_P-wetherbeei_contig5400.2.1|Name=mRNA_P-wetherbeei_contig5400.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
QLAKQNTSRKRRNHYRYVIIGAGTTSHAAIESILELEPHADILMLTDEAQ
LPRHAALRERPLPSDLLESYNEWRRHVSSKLEAEPHAFSSVPITLLLGHK
RLRLDSERRALLLDDGSEVLFDQCLLATAAKPRQFYVLTAEKSAYFLRDR
INTLR*
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mRNA from alignment at P-wetherbeei_contig5400:2563..3673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5400.2.1 ID=mRNA_P-wetherbeei_contig5400.2.1|Name=mRNA_P-wetherbeei_contig5400.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1111bp|location=Sequence derived from alignment at P-wetherbeei_contig5400:2563..3673- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGGCAAAACAAAATACTTCGCGCAAGCGCCGAAACCACTACCGTTA CGTAATCATCGGCGCTGGCACAACGTCGCACGCTGCCATCGAGTCCATTC TAGAGTTGGAGCCGCACGCCGACATCCTCATGCTCACGGACGAAGCCCAA CTACCCAGGCATGCGGCATTAGTATTGATATGAATCTATGATACTTTTTG CGAGAGGTTTGCCTCTCTTTGAGCGTTCTCTAAGAGTAGATAAAGTGAAT GATCGCCTTGTGCCTTAGAAGAACGACCGCCCACGGAGCCCTCCTACTCG GCCCCCTCACGAATCGGGTGGTATTCCTGCGCGACCTTACGGTGTGATGA CTCATTTCGCCGGCCCTCATGTGCCGACCTTTTCTATTTTCCGTTCTCTT TTTTCTTCCTCTCCTTTCTCCTTTTGGCGCGGCCTGTCGCCGTTCCATCC AGGCTGGACGTCTACCAGCGGGAGCGGCCCCTGCCGTCGGACCTGCTCGA ATCGTACAACGAGTGGCGCCGCCACGTCTCTTCCAAACTCGAGGCCGAAC CGCACGCCTTCAGGTGCGCTGGCGCGCCAGGCCGTGGCGGTTTTAGTTTT GCCGCCGACTTTTGCTGGCATGTGGCTTTGCTGGTCTGGCGGAGTGTCGT TTGATGCGGCTATGGTGTAAAGCCTTGTTAATTGTATGTGAAAGCAATGG CGGAGCCACTCTGTTGTAGAATGCTGCCCTCTGCAACTTCAGTGAGCCTG CGCTGCAGACGCACAAAGGACTATATCGCATCTGTTGCGCAAACGTTCTC GACAGCTGTTTCTTCTTCCTTTCTGGGATCTGAAAGAGTCGCGCTTTAAC TATTTGTTGTTGCTCAAATCGGCGACACGCGGGGGGAATCGGGGCGAAAA TCCAAACAGCTCGGTGCCCATCACGCTGCTGCTGGGGCACAAGCGGCTGC GGCTGGACAGCGAGCGTCGTGCGCTGCTGCTCGACGACGGCTCAGAGGTC CTCTTCGACCAGTGCTTGCTGGCGACGGCGGCCAAGCCGCGGCAGTTCTA CGTCCTCACTGCCGAGAAGAGCGCCTACTTTCTGCGCGATCGCATCAACA CGCTTAGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5400:2563..3673-

>mRNA_P-wetherbeei_contig5400.2.1 ID=mRNA_P-wetherbeei_contig5400.2.1|Name=mRNA_P-wetherbeei_contig5400.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig5400:2563..3673- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGGCAAAACAAAATACTTCGCGCAAGCGCCGAAACCACTACCGTTA
CGTAATCATCGGCGCTGGCACAACGTCGCACGCTGCCATCGAGTCCATTC
TAGAGTTGGAGCCGCACGCCGACATCCTCATGCTCACGGACGAAGCCCAA
CTACCCAGGCATGCGGCATTACGGGAGCGGCCCCTGCCGTCGGACCTGCT
CGAATCGTACAACGAGTGGCGCCGCCACGTCTCTTCCAAACTCGAGGCCG
AACCGCACGCCTTCAGCTCGGTGCCCATCACGCTGCTGCTGGGGCACAAG
CGGCTGCGGCTGGACAGCGAGCGTCGTGCGCTGCTGCTCGACGACGGCTC
AGAGGTCCTCTTCGACCAGTGCTTGCTGGCGACGGCGGCCAAGCCGCGGC
AGTTCTACGTCCTCACTGCCGAGAAGAGCGCCTACTTTCTGCGCGATCGC
ATCAACACGCTTAGGTGA
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