mRNA_P-wetherbeei_contig54.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54.4.1
Unique NamemRNA_P-wetherbeei_contig54.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54.4.1 vs. uniprot
Match: A0A182H9B7_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H9B7_AEDAL)

HSP 1 Score: 97.1 bits (240), Expect = 1.010e-19
Identity = 65/166 (39.16%), Postives = 83/166 (50.00%), Query Frame = 1
Query:  169 PLPSSAADALEGREATEWMAAMQEE---------WHNVPSPAGHGGTGGGHNVIGCRWVFARKRASDETILRYRVRLVAQGFAQRPGVDYGATFARVMHVGGLNAISPCTGGSVQLRGEPDGVVTAYLNAPLEEMLWMRRPPGPLGGFDDCVALQVLKAIDGLKQA 639
            P P +  +A+E  E   W AA++EE         W  VP PAG          IGC+W+F RK      ++RY+ RLVAQGF Q+ G DY   FA V+      A+         L    D V TAYLN  L+EM++MR PPG   G D  +   + K I GLKQA
Sbjct:  398 PEPHTIKEAMESTEKDLWKAAIKEELQAHEENGTWKVVPLPAGR-------KTIGCKWIFKRKEDEKGNVVRYKARLVAQGFTQKYGTDYDEVFAPVVKQVTFKALLSVAHQRKMLIKHID-VKTAYLNGELQEMVFMRPPPGCDFG-DSKLVCHLQKGIYGLKQA 554          
BLAST of mRNA_P-wetherbeei_contig54.4.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 97.1 bits (240), Expect = 1.090e-19
Identity = 64/157 (40.76%), Postives = 84/157 (53.50%), Query Frame = 1
Query:  175 PSSAADALEGREATEWMAAMQEEWHNVPSPAGHGGTG--GGHNVIGCRWVFARKRASDETILRYRVRLVAQGFAQRPGVDYGATFARVMHVGGLNAISPCTGGSVQLRGEPDGVVTAYLNAPLEEMLWMRRPPGPLGGFDDCVALQVLKAIDGLKQA 639
            P + ++A    E  EW  AM +E   +     +       G   IGCRWV+  KR SD  I+RY+ RLVAQGF+Q PG+DY  TFA V+    L  +            + D VV AYLNA L+E ++MR+PPG   G    V L+  KA+ GLKQA
Sbjct:   15 PRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFD-VVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLR--KALYGLKQA 168          
BLAST of mRNA_P-wetherbeei_contig54.4.1 vs. uniprot
Match: A0A075B3L7_ROZAC (Integrase, catalytic core domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B3L7_ROZAC)

HSP 1 Score: 96.7 bits (239), Expect = 1.500e-19
Identity = 57/165 (34.55%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  172 LPSSAADALEGREATEWMAAMQEE---------WHNVPSPAGHGGTGGGHNVIGCRWVFARKRASDETILRYRVRLVAQGFAQRPGVDYGATFARVMHVGGLNAISPCTGGSVQLRGEPDGVVTAYLNAPLEEMLWMRRPPGPLGGFDDCVALQVLKAIDGLKQA 639
            +P +  +AL G EA EW  AM+ E         W     PA           +GCRWVFA+K  S+  + RY+ RLVAQGF+QRPG+D   T+A V  +  +  +    G  +        +VTAYLN  L+ M++M++P G +    + +   + K++ GLKQ+
Sbjct:  372 IPRNVKEALSGAEANEWKQAMETEYKSLEENKTWKLCELPASR-------TAVGCRWVFAKKFDSEGKLQRYKARLVAQGFSQRPGIDVEQTYAPVTRIQSVRILI-ALGVQLDWHMHQMDMVTAYLNGTLDTMIYMKQPEGFIKEGSENLVCDLQKSLYGLKQS 528          
BLAST of mRNA_P-wetherbeei_contig54.4.1 vs. uniprot
Match: A0A8J4FPZ7_9CHLO (Uncharacterized protein n=20 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FPZ7_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 2.930e-19
Identity = 66/173 (38.15%), Postives = 88/173 (50.87%), Query Frame = 1
Query:  151 AAATGG-PLPSSAADALEGREATEWMAAMQEE---------WHNVPSPAGHGGTGGGHNVIGCRWVFARKRASDETILRYRVRLVAQGFAQRPGVDYGATFARVMHVGGLNAISPCTGGSVQLRGEPDGVVTAYLNAPLEEMLWMRRPPGPLGGFDDCVALQVLKAIDGLKQA 639
            AA+TG  P PS+ A+A  G  A EW  AM EE         W     P G         ++ CRWV+  KR +D  I R++  LVA+G+ QR G+DYG  FA       L A+            + D V TA+LN  LEE LWM++PPG     D  +A ++ ++I GLKQA
Sbjct:  837 AASTGEIPEPSTYAEATNGPHAEEWKKAMDEEIAAQLANGTWELARPPEGT-------RLLPCRWVYKVKRGADGEIERFKAHLVAKGYEQRAGIDYGELFAPTSRFASLRALLAVAAAKGMPIHQLD-VSTAFLNGELEEELWMQQPPG-YESKDPNLACRLKRSIYGLKQA 1000          
BLAST of mRNA_P-wetherbeei_contig54.4.1 vs. uniprot
Match: A0A4Y9ZNP4_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZNP4_9AGAM)

HSP 1 Score: 95.5 bits (236), Expect = 3.410e-19
Identity = 66/171 (38.60%), Postives = 88/171 (51.46%), Query Frame = 1
Query:  154 AATGGPLPSSAADALEGREATEWMAAMQEE---------WHNVPSPAGHGGTGGGHNVIGCRWVFARKRASDETILRYRVRLVAQGFAQRPGVDYGATFARVMHVGGLNAISPCTGGSVQLRGEPDGVVTAYLNAPLEEMLWMRRPPGPLGGFDDCVALQVLKAIDGLKQA 639
            AA G   P +  +A++G +A  W  AMQEE         W     P G          IGCRW +  KR     ILRY+ RLVAQGF+Q PGVDY  TF+  +    L AI   T      RG+ D V  A+L+  LE +++M +PPG  G   + VA  + +++ GLKQA
Sbjct:  108 AAHGERTPQNFTEAMQGPDAEHWWKAMQEEIELLTKQKTWVIEDLPEGR-------KPIGCRWTYVIKRGPKGEILRYKARLVAQGFSQIPGVDYDDTFSPTVRQESLRAIIHLTAAHGWFRGQDD-VTGAFLHGDLEHIIYMLQPPG-FGDGTNRVA-HLWRSLYGLKQA 268          
BLAST of mRNA_P-wetherbeei_contig54.4.1 vs. uniprot
Match: A0A182GZN1_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GZN1_AEDAL)

HSP 1 Score: 95.5 bits (236), Expect = 3.830e-19
Identity = 66/166 (39.76%), Postives = 84/166 (50.60%), Query Frame = 1
Query:  169 PLPSSAADALEGREATEWMAAMQEE---------WHNVPSPAGHGGTGGGHNVIGCRWVFARKRASDETILRYRVRLVAQGFAQRPGVDYGATFARVMHVGGLNAISPCTGGSVQLRGEPDGVVTAYLNAPLEEMLWMRRPPGPLGGFDDCVALQVLKAIDGLKQA 639
            P P +  +A+   E   W AA++EE         W  VP PAG          IGC+W+F RK   DE ++RY+ RLVAQGF Q+ G DY   FA V+      A+         L    D V TAYLN  L+EM++MR PPG   G D  +   + K I GLKQA
Sbjct:  786 PEPRTIKEAMGSTEQDLWKAAIKEELQAHEENGTWKVVPLPAGR-------KTIGCKWIFKRKE--DENVVRYKARLVAQGFTQKYGTDYDEVFAPVVKQVTFKALLSVAHQRKMLIKHID-VKTAYLNGELQEMVFMRPPPGCDFG-DSKLVCHLQKGIYGLKQA 940          
BLAST of mRNA_P-wetherbeei_contig54.4.1 vs. uniprot
Match: A0A0C2WM40_AMAMK (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WM40_AMAMK)

HSP 1 Score: 94.4 bits (233), Expect = 8.110e-19
Identity = 71/195 (36.41%), Postives = 103/195 (52.82%), Query Frame = 1
Query:  112 EYSATTVEVIA-----AAAAATGGPLPSSAADALEGREATEWMAAMQEE---------WHNVPSPAGHGGTGGGHNVIGCRWVFARKRASDETILRYRVRLVAQGFAQRPGVDYG--ATFARVMHVGGLNA-ISPCTGGSVQLRGEPDGVVTAYLNAPLEEMLWMRRPPGPLGGFDDCVA--LQVLKAIDGLKQA 639
            EY+  T++ +      A  A++   +P++  +A    EA +W  AM EE         W  V  P G        N++GC+WVF +KR  +  I R++ RLVAQGF+Q+PGVDY    TFA VM    L   ++     + +LR     V +AYLN  L+E ++MR+PPG    FDD      ++ K+I GLKQA
Sbjct:   19 EYANLTIDNVVDFIEVALKASSSEDVPNNVEEARGCDEAEKWEGAMGEELEMMKKMGTWELVDLPEGK-------NIVGCKWVFTKKRDEEGRINRFKARLVAQGFSQKPGVDYSNTGTFAPVMRFESLRTHLALAAVNNWELR--QFDVKSAYLNGSLDEEIYMRQPPG----FDDGSGRVCRLKKSIYGLKQA 200          
BLAST of mRNA_P-wetherbeei_contig54.4.1 vs. uniprot
Match: A0A8H4R3V9_9AGAR (Uncharacterized protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4R3V9_9AGAR)

HSP 1 Score: 94.0 bits (232), Expect = 1.360e-18
Identity = 64/167 (38.32%), Postives = 85/167 (50.90%), Query Frame = 1
Query:  172 LPSSAADALEGREATEWMAAMQEE---------WHNVPSPAGHGGTGGGHNVIGCRWVFARKRASDETILRYRVRLVAQGFAQRPGVDYG--ATFARVMHVGGLNAISPCTGGSVQLRGEPDGVVTAYLNAPLEEMLWMRRPPGPLGGFDDCVALQVLKAIDGLKQA 639
            LP +  +AL G EAT+W  AM EE         W     P G         V+GCRWVF +KR     +++++ RLV QGF+Q+PGVDY    TFA VM    L  +         L+     V  AYL+  LEE ++M +PPG   G  D   L  L+++ GLKQA
Sbjct:  893 LPRTFEEALAGPEATQWKEAMDEEMGTLEKMGTWRKGMLPVGR-------KVVGCRWVFTKKRDEYGRVVKFKARLVVQGFSQKPGVDYSEDGTFAPVMRFETLRTMLAFAAVD-DLKLRQFDVKGAYLHGHLEEEIFMTQPPGYDDGSGDVCIL--LRSLYGLKQA 1049          
BLAST of mRNA_P-wetherbeei_contig54.4.1 vs. uniprot
Match: A0A0B7FGS9_THACB (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=A0A0B7FGS9_THACB)

HSP 1 Score: 92.8 bits (229), Expect = 2.990e-18
Identity = 56/148 (37.84%), Postives = 83/148 (56.08%), Query Frame = 1
Query:  193 ALEGREATEWMAAMQEEWHNV-------PSPAGHGGTGGGHNVIGCRWVFARKRASDETILRYRVRLVAQGFAQRPGVDYGATFARVMHVGGLNAISPCTGGSVQLRGEPD----GVVTAYLNAPLEEMLWMRRPPGPLGGFDDCVAL 603
            A+   E+++W+AAM+EE+  +       P+P    GT    N+IGCRWVFA+KR     + RY+ RLVA+G+ Q+PG D+  TFA V+ +  L  +      S+    + D     VV AYLNA L+E L+M + PG     D+ + L
Sbjct:  533 AMTSPESSQWIAAMEEEYSQLMRMGTFTPTPRPPTGT----NIIGCRWVFAKKRDEHGNVTRYKARLVAKGYTQKPGQDFDDTFAPVLRLDSLRILC-----SLACYNDWDMRQLDVVGAYLNATLQEELYMEQIPGFSDSTDNVLRL 671          
BLAST of mRNA_P-wetherbeei_contig54.4.1 vs. uniprot
Match: A0A182G6D5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G6D5_AEDAL)

HSP 1 Score: 90.5 bits (223), Expect = 4.620e-18
Identity = 59/164 (35.98%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  175 PSSAADALEGREATEWMAAMQEE---------WHNVPSPAGHGGTGGGHNVIGCRWVFARKRASDETILRYRVRLVAQGFAQRPGVDYGATFARVMHVGGLNAISPCTGGSVQLRGEPDGVVTAYLNAPLEEMLWMRRPPGPLGGFDDCVALQVLKAIDGLKQA 639
            P+S  DA+   E   W  AM+EE         W  V  PAG        + IGC+WVF RK  S   + R++ RLVAQGF+QRPGVDY A FA V     L  +    G   ++      V +AYL+  L+E ++M +P G +    + +  ++ +++ GLKQA
Sbjct:   96 PTSYEDAVRSSEKMLWKVAMKEEYDSLMQNGTWKLVELPAGR-------DPIGCKWVFKRKEDSVGKVTRFKARLVAQGFSQRPGVDYDAVFAPVASQNTLRVLFTVAGHK-RMNVRHIDVKSAYLHGRLQEDIYMEQPRGFVQPGKEKLVCKLERSLYGLKQA 251          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182H9B7_AEDAL1.010e-1939.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A1M2V3W8_TRAPU1.090e-1940.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A075B3L7_ROZAC1.500e-1934.55Integrase, catalytic core domain-containing protei... [more]
A0A8J4FPZ7_9CHLO2.930e-1938.15Uncharacterized protein n=20 Tax=Volvox reticulife... [more]
A0A4Y9ZNP4_9AGAM3.410e-1938.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182GZN1_AEDAL3.830e-1939.76Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A0C2WM40_AMAMK8.110e-1936.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H4R3V9_9AGAR1.360e-1838.32Uncharacterized protein n=1 Tax=Agrocybe pediades ... [more]
A0A0B7FGS9_THACB2.990e-1837.84Retrovirus-related Pol polyprotein from transposon... [more]
A0A182G6D5_AEDAL4.620e-1835.98Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54contigP-wetherbeei_contig54:6325..6963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5217.XP_007002292.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size640
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.04e-17
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,3VFTM@5234|Tremellales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size639
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.8641047-CDS-P-wetherbeei_contig54:6324..69631683186806.8641047-CDS-P-wetherbeei_contig54:6324..6963Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54 6325..6963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54.4.1prot_P-wetherbeei_contig54.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54 6325..6963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54.4.1

>prot_P-wetherbeei_contig54.4.1 ID=prot_P-wetherbeei_contig54.4.1|Name=mRNA_P-wetherbeei_contig54.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=213bp
AAETAELPALDGVWTELSSPTGVRNLAFPILLASEAQEYSATTVEVIAAA
AAATGGPLPSSAADALEGREATEWMAAMQEEWHNVPSPAGHGGTGGGHNV
IGCRWVFARKRASDETILRYRVRLVAQGFAQRPGVDYGATFARVMHVGGL
NAISPCTGGSVQLRGEPDGVVTAYLNAPLEEMLWMRRPPGPLGGFDDCVA
LQVLKAIDGLKQA
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mRNA from alignment at P-wetherbeei_contig54:6325..6963-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54.4.1 ID=mRNA_P-wetherbeei_contig54.4.1|Name=mRNA_P-wetherbeei_contig54.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig54:6325..6963- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGAGACAGCTGAACTGCCCGCTCTTGATGGCGTTTGGACGGAGCT GTCCTCGCCAACCGGAGTGCGGAACTTGGCTTTCCCGATTTTGTTGGCGT CGGAGGCCCAAGAGTACTCAGCCACAACTGTCGAGGTCATCGCCGCGGCA GCGGCAGCTACTGGTGGCCCTCTACCGAGCTCGGCAGCAGACGCGCTGGA AGGGCGGGAGGCAACGGAATGGATGGCGGCAATGCAGGAGGAGTGGCACA ATGTCCCATCGCCTGCCGGTCATGGAGGTACCGGTGGGGGGCACAATGTC ATCGGCTGCCGGTGGGTGTTTGCGCGGAAGCGGGCATCGGACGAGACCAT TCTGCGCTACAGAGTACGGCTTGTGGCGCAGGGCTTCGCGCAGCGGCCGG GCGTGGACTACGGCGCGACGTTTGCGCGGGTCATGCATGTCGGCGGACTC AATGCGATATCTCCTTGCACTGGGGGCAGCGTTCAACTTCGAGGTGAACC AGATGGCGTGGTGACGGCGTATCTGAACGCTCCGCTGGAGGAAATGCTGT GGATGCGACGGCCGCCGGGGCCGCTTGGTGGGTTCGACGACTGTGTGGCG CTGCAAGTGCTGAAGGCCATTGACGGGCTCAAGCAGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54:6325..6963-

>mRNA_P-wetherbeei_contig54.4.1 ID=mRNA_P-wetherbeei_contig54.4.1|Name=mRNA_P-wetherbeei_contig54.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig54:6325..6963- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGAGACAGCTGAACTGCCCGCTCTTGATGGCGTTTGGACGGAGCT
GTCCTCGCCAACCGGAGTGCGGAACTTGGCTTTCCCGATTTTGTTGGCGT
CGGAGGCCCAAGAGTACTCAGCCACAACTGTCGAGGTCATCGCCGCGGCA
GCGGCAGCTACTGGTGGCCCTCTACCGAGCTCGGCAGCAGACGCGCTGGA
AGGGCGGGAGGCAACGGAATGGATGGCGGCAATGCAGGAGGAGTGGCACA
ATGTCCCATCGCCTGCCGGTCATGGAGGTACCGGTGGGGGGCACAATGTC
ATCGGCTGCCGGTGGGTGTTTGCGCGGAAGCGGGCATCGGACGAGACCAT
TCTGCGCTACAGAGTACGGCTTGTGGCGCAGGGCTTCGCGCAGCGGCCGG
GCGTGGACTACGGCGCGACGTTTGCGCGGGTCATGCATGTCGGCGGACTC
AATGCGATATCTCCTTGCACTGGGGGCAGCGTTCAACTTCGAGGTGAACC
AGATGGCGTGGTGACGGCGTATCTGAACGCTCCGCTGGAGGAAATGCTGT
GGATGCGACGGCCGCCGGGGCCGCTTGGTGGGTTCGACGACTGTGTGGCG
CTGCAAGTGCTGAAGGCCATTGACGGGCTCAAGCAGGCG
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