mRNA_P-wetherbeei_contig54.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54.3.1
Unique NamemRNA_P-wetherbeei_contig54.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig54.3.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.820e-21
Identity = 95/329 (28.88%), Postives = 144/329 (43.77%), Query Frame = 3 
Query:   15 FKSSISQRFAIMDLGRVHALLGILVQQDLVAGIIHPSQPHYIDELLTRFRMSAAWPVQTPTCPGAPPREQVPGTGNGG*GCGDGG*TVAGAGWGGALPGCD-DADGHFSTMCGR*RDAAITRWPDWLAAHWLLRYLKGTREKGLL*NWSTAARVPTPGAAIGYADAEWV---------------LRHGQPLVGRCVRFPAEWRRVFLAVKDAGLHCRLDMRGRVRRRCLCCAACALAATTHASRGLSVTAPTPIHEDNKPCSYNPTNLFSERRVKHIDIKFHIVRKRVESGEVLLVAIWMKDQIADLFTKPLPTPRTRFRREQILGEYY 953
            FK +IS+ F++ DL  +H +LG+ +++D    ++  SQ  YID +L +FRM+   PV TP                      +G  T         + G D   D  +  + G    AA+   PD   A  +LRYLKGTRE GL    ++          +GYADA++                L HG  +    + + A+ + V +A+  A           +   C    +           G     PT I EDN+ C     N   ++R KHID+++H VR++VES EV LV I  + Q+AD+ TKPL   R    R +++G  Y
Sbjct:  431 FKHAISREFSMKDLKELHWILGMAIKRDREKRVMEISQTAYIDMMLAKFRMADCKPVLTPM---------------------EGTLTK--------MDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAR-VLRYLKGTREVGLKYTGNSTGSF----TLVGYADADYAGDKDNRRSTSGYTFTLSHGDDI--NTIDWKAKQQDV-VALSSA--------ESELISACSATQSAVYIRQLLMDLGFKQDEPTVIMEDNQACIAMSNNPIIQKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPLSNIRLAMIRNRMMGYKY 714
[Close]
BLAST of mRNA_P-wetherbeei_contig54.3.1 vs. uniprot
Match: W7TF74_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TF74_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.460e-17
Identity = 93/345 (26.96%), Postives = 142/345 (41.16%), Query Frame = 3 
Query:   15 FKSSISQRFAIMDLGRVHALLGILVQQDLVAGIIHPSQPHYIDELLTRFRMSAAWPVQTPTCPGAPPREQVPGTGNGG*GCGDGG*TVAGAGWGGALPGCD-DADGHFSTMCGR*RDAAITRWPD-------------------WLAAHWLLRYLKGTREKGLL*NWSTAARVPTPGAAIGYADAEWV---------------LRHGQPLVGRCVRFPAEWRRVFLAVKDAGLHCRLDMRGRVRRRCLCCAACALAATTHASRGLSVTAPTPIHEDNKPCSYNPTNLFSERRVKHIDIKFHIVRKRVESGEVLLVAIWMKDQIADLFTKPLPTPRTRFRREQILG 944
            FK  IS+ F++ DL  +  +LG+ ++++     +  SQ  YID +L +F M+   PV TP                      +G  T         + G D   D  +  + G    AA+   PD                   W+AA  +LRYLKGTRE GL    ++          +G+ADA++                L HG  +    + + A+ + V +A+  A           +   C    +           G     PT I EDN+ C     N  + +R KHID++FH VR +VES EV LV I  + Q+AD+ TKPL + R    R +++G
Sbjct:    5 FKQDISREFSMKDLKELDWILGMAIKRNRENRTMEISQTGYIDMMLNKFGMTECKPVLTPM---------------------EGTLTK--------MDGKDVKPDSEYMKLVGSLLYAALVTRPDIAFAVQSLGKYLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSF----TLVGFADADYAGNKDNRRSTSGYTFTLSHGDDV--NTIDWKAKQQDV-VALSSA--------ESELISACSATQSAVYIRQLLMDLGFKQDKPTVIMEDNQACIAMSNNPITHKRTKHIDVRFHFVRGKVESKEVELVYIPTQHQLADILTKPLSSIRLAMIRNRMMG 305
[Close]
BLAST of mRNA_P-wetherbeei_contig54.3.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.060e-16
Identity = 92/345 (26.67%), Postives = 143/345 (41.45%), Query Frame = 3 
Query:   15 FKSSISQRFAIMDLGRVHALLGILVQQDLVAGIIHPSQPHYIDELLTRFRMSAAWPVQTPTCPGAPPREQVPGTGNGG*GCGDGG*TVAGAGWGGALPGCD-DADGHFSTMCGR*RDAAITRWPD-------------------WLAAHWLLRYLKGTREKGLL*NWSTAARVPTPGAAIGYADAEWV---------------LRHGQPLVGRCVRFPAEWRRVFLAVKDAGLHCRLDMRGRVRRRCLCCAACALAATTHASRGLSVTAPTPIHEDNKPCSYNPTNLFSERRVKHIDIKFHIVRKRVESGEVLLVAIWMKDQIADLFTKPLPTPRTRFRREQILG 944
            FK +IS+ F++ DL  +  +LG+ ++++    I+  SQ  YID +L +F M+   PV TP                      +G  T         + G D   D  +  + G    AA+   PD                   W+AA  +LRYLKGTR+ G+    +T          +G+ADA++                L HG  +    + + A+ + V +A+  A           +   C    +           G     PT I EDN+ C     N  + +R KHID+++H VR++VES EV LV I  + Q+AD+ TK L   R    R Q++G
Sbjct:  708 FKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPM---------------------EGTLTK--------MDGKDVKPDSEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGSF----TLVGFADADYAGDKDNRRSTSGYAFTLSHGDDI--NTIDWKAKQQEV-VALSSA--------ESELISACSATQSAVYIRQLLTDLGFKQDEPTVIMEDNQACIAMGNNPITHKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKSLSNIRLARIRNQMMG 1008
[Close]
BLAST of mRNA_P-wetherbeei_contig54.3.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.160e-16
Identity = 91/350 (26.00%), Postives = 145/350 (41.43%), Query Frame = 3 
Query:   15 FKSSISQRFAIMDLGRVHALLGILVQQDLVAGIIHPSQPHYIDELLTRFRMSAAWPVQTPTCPGAPPREQVPGTGNGG*GCGDGG*TVAGAGWGGALPGCD-DADGHFSTMCGR*RDAAITRWPD-------------------WLAAHWLLRYLKGTREKGLL*NWSTAARVPTPGAAIGYADAEWV---------------LRHGQPLVGRCVRFPAEWRRVFLAVKDAGLHCRLDMRGRVRRRCLCCAACALAATTHASRGLSVTAPTPIHEDNKPCSYNPTNLFSERRVKHIDIKFHIVRKRVESGEVLLVAIWMKDQIADLFTKPLPTP---RTRFRREQILGEY 950
            FK +IS+ F++ DL  +  +LG+ ++++    ++  SQ  YID +L +F M+   PV TP                      +G  T         + G D   D  +  + G    AA+   PD                   W+AA  +LRYLKGTR+ G+    +T          +G+ADA++                L HG  +    + + A+ + V +A+  A           +   C    +           G     PT I EDN+ C     N  + ++ KHID+++H VR++VES EV LV I  + Q+AD+ TKPL        R+ R++  G Y
Sbjct:  419 FKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPM---------------------EGTLTK--------MDGKDAKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGSF----TLVGFADADYAGDKDNRRSTSGYAFTLSHGDDI--NTIDWKAKQQEV-VALSSA--------ESELISACSATQSAVYIRQLLTDLGFKQDEPTVIVEDNQACIAMGNNPITHKKTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPLLNSCGISCRYVRDERYGSY 724
[Close]
BLAST of mRNA_P-wetherbeei_contig54.3.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.170e-14
Identity = 92/349 (26.36%), Postives = 142/349 (40.69%), Query Frame = 3 
Query:   15 FKSSISQRFAIMDLGRVHALLGILVQQDLVAGIIHPSQPHYIDELLTRFRMSAAWPVQTPTCPGAPPREQVPGTGNGG*GCGDGG*TVAGAGWGGALPGCD-DADGHFSTMCGR*RDAAITRWPD-------------------WLAAHWLLRYLKGTREKGLL*NWSTAARVPTPGAAIGYADAEWV---------------LRHGQPLVGRCVRFPAEWRRVFLAVKDAGLH----CRLDMRGRVRRRCLCCAACALAATTHASRGLSVTAPTPIHEDNKPCSYNPTNLFSERRVKHIDIKFHIVRKRVESGEVLLVAIWMKDQIADLFTKPLPTPRTRFRREQILG 944
            FK  IS+ F++ DL  +  +LG+ ++++     +  SQ  YI  +L +F M+    V TP                      +G  T         + G D   D  +  + G    AA+   PD                   W+AA  +LRYLKGTR+ GL    ++          +GYADA++                L HG  +    + + A+ + V +A+  A       C         R+ L               G     PT I EDN+ C     N  + +R KHID+++H VR++VES EV LV I  + Q+AD+ TKPL + R    R +++G
Sbjct:  410 FKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPM---------------------EGTLTK--------MDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGSF----TLVGYADADYAGDKDNRRSTSGYTFTLSHGDDV--NTIDWKAKQQDV-VALSSAESELISACSATQNAVYIRQLLM------------DLGFKQDEPTVIMEDNQACIAMGNNPITHKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPLSSIRLAMIRNRMMG 710
[Close]
BLAST of mRNA_P-wetherbeei_contig54.3.1 vs. uniprot
Match: UPI0010167CD7 (uncharacterized protein LOC114195042 n=1 Tax=Vigna unguiculata TaxID=3917 RepID=UPI0010167CD7)

HSP 1 Score: 80.9 bits (198), Expect = 2.300e-13
Identity = 93/345 (26.96%), Postives = 141/345 (40.87%), Query Frame = 3 
Query:   15 FKSSISQRFAIMDLGRVHALLGILVQQDLVAGIIHPSQPHYIDELLTRFRMSAAWPVQTPTCPGAPPREQVPGTGNGG*GCGDGG*TVAGAGWGGALPGCDDADGH-FSTMCGR*RDAAITRWPDWLAA--------------HW-----LLRYLKGTREKGLL*NWSTAARVPTPGAAIGYADAE------------------------WVLRHGQPLV--GRC-VRFPAEWRRVFLAVKDAGLHCRLDMRGRVRRRCLCCAACALAATTHASRGLSVTAPTPIHEDNKPCSYNPTNLFSERRVKHIDIKFHIVRKRVESGEVLLVAIWMKDQIADLFTKPLPT 908
            FK ++ + F + DLG +   LG+ V+Q L  GI   SQ  Y++++L++F+M++  PV TP  PG    +                             G D  D + + ++ G  R    TR PD L +              HW     +LRY++GT   GL    S   R+      IGY+D +                        W+ +  QP+V    C V + A    V  A+    L  +L+M+                      +G  V     I  DNK       N  +  R KHID+KFH ++++V+ G + +V +  +DQIADLFTKPLPT
Sbjct:   23 FKRTMEKEFEMTDLGHMRYFLGLEVKQ-LETGIF-VSQERYVEDILSKFKMASCNPVSTPMEPGTKLSK---------------------------FDGGDHVDANKYRSLVGSLRYLTSTR-PDLLLSVGIVSRYMEEPSYTHWKALKRILRYVRGTTSLGLYYTRSDDYRL------IGYSDNDRCGDVDDRKSTSGYVFFMSNTTFTWLSKK-QPIVTLSTCEVEYVAASLNVCHAIWLRNLLSKLEMK---------------------QKGGIV-----IRVDNKSAIELTKNPVNHGRSKHIDVKFHSIQEQVKKGNIEIVHVGSRDQIADLFTKPLPT 304
[Close]
BLAST of mRNA_P-wetherbeei_contig54.3.1 vs. uniprot
Match: W7TAL4_9STRA (Putative polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAL4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.480e-13
Identity = 66/210 (31.43%), Postives = 97/210 (46.19%), Query Frame = 3 
Query:  387 WLAAHWLLRYLKGTREKGLL*NWSTAARVPTPGAAIGYADAEWV---------------LRHGQPLVGRCVRFPAEWRRVFLAVKDAGLHCRLDMRGRVRRRCLCCAACALAATTHASR------GLSVTAPTPIHEDNKPCSYNPTNLFSERRVKHIDIKFHIVRKRVESGEVLLVAIWMKDQIADLFTKPLPTPRTRFRREQILGEYY 953
            W+AA  +LRYLKGTRE GL    +T          IGYADA++                L HG+  +   + + A+ + V +A+  A                   +AC+   T    R      G     PT I EDN+ C     N    +R KHI +++H VR++VES EV LV I  + Q+AD+ TKPL + R    R++++G  +
Sbjct:   37 WIAAKRVLRYLKGTREIGLKYTGNTTGSF----TLIGYADADYAGDKDNRRSTSGYTFTLSHGE--IVNTIDWRAKQQEV-VALSSAESEL--------------ISACSATQTAIYIRQLLMDLGSKQDEPTMIMEDNQACIAMSNNPIKHKRTKHIHVRYHFVREKVESKEVELVYIPTQHQLADILTKPLLSIRFVMIRDRMMGHEF 225
[Close]
BLAST of mRNA_P-wetherbeei_contig54.3.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.620e-13
Identity = 86/327 (26.30%), Postives = 139/327 (42.51%), Query Frame = 3 
Query:   15 FKSSISQRFAIMDLGRVHALLGILVQQDLVAGIIHPSQPHYIDELLTRFRMSAAWPVQTPTCPGAPPREQVPGTGNGG*GCGDGG*TVAGAGWGGALPGCD-DADGHFSTMCGR*RDAAITRWPDW-LAAHWLLRYLKGTREKGLL*NWSTAARVPTPGAAIGYADAEWV---------------LRHGQPLVGRCVRFPAEWRRVFLAVKDAGLHCRLDMRGRVRRRCLCCAACALAATTHASRGLSVTAPTPIHEDNKPCSYNPTNLFSERRVKHIDIKFHIVRKRVESGEVLLVAIWMKDQIADLFTKPLPTPRTRFRREQILG 944
            FK +IS+ F++ DL  +  +LG+ +++D    ++  SQ  YID +L +F M+   PV TP                      +G  T         + G D   D  +  + G    AA+   PD   A   L ++L+G+ E+    +W  A RV      +G+ADA++                L HG  +    + + A+ + V +A+  A           +   C    +           G      T I E+N+ C     N  + +R KHID+++H VR +VES EV LV I  + Q+AD+ TKPL   R    R +++G
Sbjct:  630 FKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADCKPVLTPM---------------------EGTLTK--------MDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEE----HWIAAKRVLRY-QKVGFADADYAGDKDNRRSTSGYTFTLSHGDDV--NTIDWKAKQQEV-VALSSA--------ESELISACSATQSAVYIRQLLTDLGFKQDEATVIMENNQACIAMSNNPITHKRTKHIDVRYHFVRDKVESKEVELVYIPTQHQLADILTKPLSNIRLAMIRNRMMG 911
[Close]
BLAST of mRNA_P-wetherbeei_contig54.3.1 vs. uniprot
Match: A0A060S825_PYCCI (CCHC-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S825_PYCCI)

HSP 1 Score: 81.6 bits (200), Expect = 5.500e-13
Identity = 100/334 (29.94%), Postives = 137/334 (41.02%), Query Frame = 3 
Query:    6 IIDFKSSISQRFAIMDLGRVHALLGILVQQDLVAGIIHPSQPHYIDELLTRFRMSAAWPVQTPTCPGAP-PREQVPGTGNGG*GCGDGG*TVAGAGWGGALPGCDDADGHFSTMCGR*RDAA--ITRWPDWLA----AHW-----LLRYLKGTREKGLL*NWSTAARVPTPGAAIGYADAEW--VLRHGQPLVGRCVRFPAEWRRVFLAVKDAGLHCRLDMRGRVRRRCLCCAACALAATTHASRG---LSVTAPTPIHEDNKPCSYNPTNLFSERR--------------VKHIDIKFHIVRKRVESGEVLLVAIWMKDQIADLFTKPLPTPR 914
            ++DFKS+IS RF + DLG +  +LGI VQ+D  A  I  SQ  YID +  RF +  A PV TP  PG    R Q P T +           VA       +P  +        + G   D A  +T    ++     AHW     ++RYL GTRE  L+   S            G++DA+W     H   + G            ++   D G       +  V    L        A THA++    L       IH D    S  P  LFS+ R               KHIDI+FH +R+ V+  +++L     +D  ADLFTK LP  R
Sbjct: 1173 VMDFKSAISARFEMSDLGAMRWILGIEVQRDRQARTIAISQRTYIDTVAARFNLETANPVSTPLQPGGVLTRSQSPSTPH----------QVADMS---NVPYREAVGSLMYAVMGTRPDIAFAVTTLSQFMQNPGRAHWEAVKRVIRYLVGTRELWLVYGTSDDG-------IQGFSDADWGSSTEHRHSISG------------YVFTLDGGAISWSSKKQNVVA--LSSTEAEYIALTHAAKEALWLRYLLSDIIHPD---ISRYPLTLFSDNRSAIALAKDNAFHPRTKHIDIRFHFIREAVDDEKIILQHRRTEDMPADLFTKALPRSR 1469
[Close]
BLAST of mRNA_P-wetherbeei_contig54.3.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 80.9 bits (198), Expect = 9.810e-13
Identity = 96/342 (28.07%), Postives = 134/342 (39.18%), Query Frame = 3 
Query:    3 AIIDFKSSISQRFAIMDLGRVHALLGILVQQDLVAGIIHPSQPHYIDELLTRFRMSAAWPVQTPTCPGA--------------------PPREQVPGTGNGG*GCGDGG*TVAGAGWGGALPGCDDADGHFSTMCGR*RDAAITRWPDWLAAHWLLRYLKGTREKGLL*NWSTAARVPTPGAAIGYADAEW-VLRHGQPLVGRCVRFPAEWRRVFLAVKDAGLHCRLDMRGRVRRRCLCCAACALAATTHAS------RGLSVTAPTP--------IHEDNKPCSYNPTNLFSERRVKHIDIKFHIVRKRVESGEVLLVAIWMKDQIADLFTKPLPTPRTRF 923
            A++ FK+ IS+RF + DLG +H +LGI V++D  A  +  SQ  YID L+ RF +  A P+ TP  PGA                    P RE +            G    A  G    +     A   F    GR           W AA  +LRYLK TREK     W T     T     G++DA+W    H   + G    F  +   V  + K   +              L        A THA+      R L      P        +H DN+       +     R KHIDI++H +R+ V+S  + L+    +D  AD+FTK LP  +  +
Sbjct: 1170 AVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNLEDAKPLSTPLEPGAILSIRQCPSTPREFEDMRNVPYREAI------------GSLMYAALGTRPDIAFAVTALSQFMQNPGR---------AHWEAAKRVLRYLKSTREK-----WLTYGL--TRNGVEGFSDADWGSSEHRHSICGYV--FLIDGGAVSWSAKKQPVVA------------LSSTEAEYIALTHAAKEAIWVRYLLADILDPDVSKFALRLHTDNRSAIALAKDNAYHARTKHIDIRYHFIREAVDSAAISLLYRRTEDMPADIFTKSLPRVKVEY 1469
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T0D1_9STRA9.820e-2128.88Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TF74_9STRA1.460e-1726.96Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T174_9STRA1.060e-1626.67Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TIM1_9STRA8.160e-1626.00Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TJ26_9STRA4.170e-1426.36Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
UPI0010167CD72.300e-1326.96uncharacterized protein LOC114195042 n=1 Tax=Vigna... [more]
W7TAL4_9STRA3.480e-1331.43Putative polyprotein n=1 Tax=Nannochloropsis gadit... [more]
W7T0T3_9STRA3.620e-1326.30Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A060S825_PYCCI5.500e-1329.94CCHC-type domain-containing protein n=1 Tax=Pycnop... [more]
A0A401GQU1_9APHY9.810e-1328.07Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54contigP-wetherbeei_contig54:5000..6140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7425.NV23390-PA
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1141
Max annot lvl33208|Metazoa
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.31e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda
DescriptionEncoded by
Cds size399
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.8103118-UTR-P-wetherbeei_contig54:4999..51181683186806.8103118-UTR-P-wetherbeei_contig54:4999..5118Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54 5000..5118 -
1683186806.8336935-UTR-P-wetherbeei_contig54:5517..61401683186806.8336935-UTR-P-wetherbeei_contig54:5517..6140Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54 5518..6140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.8240423-CDS-P-wetherbeei_contig54:5118..55171683186806.8240423-CDS-P-wetherbeei_contig54:5118..5517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54 5119..5517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54.3.1prot_P-wetherbeei_contig54.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54 5119..5517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54.3.1

>prot_P-wetherbeei_contig54.3.1 ID=prot_P-wetherbeei_contig54.3.1|Name=mRNA_P-wetherbeei_contig54.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
MRGRVRRRCLCCAACALAATTHASRGLSVTAPTPIHEDNKPCSYNPTNLF
SERRVKHIDIKFHIVRKRVESGEVLLVAIWMKDQIADLFTKPLPTPRTRF
RREQILGEYYFCCVWQQAAESESSLYENWGFS*
back to top

mRNA from alignment at P-wetherbeei_contig54:5000..6140-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54.3.1 ID=mRNA_P-wetherbeei_contig54.3.1|Name=mRNA_P-wetherbeei_contig54.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1141bp|location=Sequence derived from alignment at P-wetherbeei_contig54:5000..6140- (Phaeothamnion wetherbeei SAG_119_79)
CGGCCATCATCGACTTTAAAAGTTCCATCTCGCAACGTTTCGCCATCATG
GACTTGGGGCGAGTCCACGCGCTCCTCGGCATTCTTGTTCAGCAAGATCT
TGTGGCCGGGATCATCCATCCCTCTCAGCCGCACTACATTGACGAGCTCC
TGACGCGTTTCCGCATGAGCGCCGCTTGGCCAGTGCAGACGCCAACATGT
CCCGGCGCCCCACCGCGGGAGCAAGTTCCGGGCACCGGTAACGGCGGCTG
AGGCTGCGGAGATGGCGGGTAAACCGTTGCGGGAGCTGGTTGGGGCGGTG
CTCTACCTGGCTGTGACGACGCGGACGGACATTTTTCGACCATGTGCGGG
CGCTAACGCGACGCTGCCATAACTCGCTGGCCTGACTGGCTGGCCGCTCA
CTGGCTGCTTCGCTACCTGAAGGGCACCCGGGAGAAAGGCCTGCTGTAAA
ATTGGAGTACTGCAGCCCGTGTGCCAACGCCGGGGGCGGCGATTGGCTAC
GCAGACGCAGAGTGGGTGTTGCGACATGGACAGCCGTTGGTCGGTCGGTG
CGTACGTTTTCCTGCGGAGTGGCGCCGCGTTTTCCTTGCGGTCAAAGACG
CAGGACTGCACTGTCGCCTCGACATGCGAGGCCGAGTACGCCGCCGCTGC
CTATGCTGTGCAGCATGCGCTCTGGCTGCGACGACTCACGCAAGTCGCGG
ACTTAGCGTGACGGCTCCTACGCCAATCCACGAAGACAACAAGCCCTGCT
CCTACAACCCCACCAACCTCTTCAGCGAACGGCGGGTGAAGCACATCGAC
ATCAAGTTTCACATCGTGCGGAAGCGGGTGGAGAGTGGAGAGGTGCTTTT
GGTGGCCATATGGATGAAGGACCAGATAGCGGATCTATTCACCAAACCAC
TACCGACTCCCCGTACACGCTTTCGGCGAGAACAGATTTTAGGTGAATAT
TATTTTTGCTGTGTGTGGCAGCAAGCAGCAGAGAGCGAGAGTAGCTTGTA
CGAGAACTGGGGTTTCTCGTAGGTTTTCAAATTATTATTTGATTTATGTA
TGTTTCAAACGGACGGCAGCACAGGCGCCGGCTTCTGCAATTGTCTGCCC
GTGAGGTTATGTCAGAGTATCGGTCAGTCAGTCTTGCCCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig54:5000..6140-

>mRNA_P-wetherbeei_contig54.3.1 ID=mRNA_P-wetherbeei_contig54.3.1|Name=mRNA_P-wetherbeei_contig54.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig54:5000..6140- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAGGCCGAGTACGCCGCCGCTGCCTATGCTGTGCAGCATGCGCTCT
GGCTGCGACGACTCACGCAAGTCGCGGACTTAGCGTGACGGCTCCTACGC
CAATCCACGAAGACAACAAGCCCTGCTCCTACAACCCCACCAACCTCTTC
AGCGAACGGCGGGTGAAGCACATCGACATCAAGTTTCACATCGTGCGGAA
GCGGGTGGAGAGTGGAGAGGTGCTTTTGGTGGCCATATGGATGAAGGACC
AGATAGCGGATCTATTCACCAAACCACTACCGACTCCCCGTACACGCTTT
CGGCGAGAACAGATTTTAGGTGAATATTATTTTTGCTGTGTGTGGCAGCA
AGCAGCAGAGAGCGAGAGTAGCTTGTACGAGAACTGGGGTTTCTCGTAG
back to top